BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490368
Length=1436
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16570.2 | Symbols: | UDP-Glycosyltransferase superfamily p... 1033 0.0
> AT1G16570.2 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr1:5670577-5673600 REVERSE LENGTH=1729
Length=1729
Score = 1033 bits (559), Expect = 0.0
Identities = 782/878 (89%), Gaps = 61/878 (7%)
Strand=Plus/Plus
Query 3 ACGATGGGTAAAAGAGGAAGGGCTTGTGTAGTGGTACTTGGAGATCTTGGTCGAAGTCCT 62
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 50 ACGATGGGGAAAAGAGGAAGGGCTTGTGTAGTGGTACTTGGAGATCTTGGTCGAAGTCCT 109
Query 63 CGGATGCAATATCACGCTCTTTCTCTTGCTCGTCAGGCATCATTTCAAGTAGACATTGTT 122
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 110 CGGATGCAATATCACGCTCTTTCTCTTGCTCGTCAGGCATCATTTCAAGTGGACATTGTT 169
Query 123 GCATATGGAGAATGC-AT-TGTTAT-AATCTGTTCTAAATCACCCATCGATCCACATCCA 179
|||||||||| | | || || || ||||||||||||||||||| |||||||||||
Sbjct 170 GCATATGGAG-GTTCTATACCCCATGAAGCTGTTCTAAATCACCCATCAATCCACATCCA 228
Query 180 TACCATGGCGCAGCCACG----ATTC----C-TT-C--AGCT-CTTTATCCTGTAACTCT 226
||||||||||||||| || |||| | || | || | |||||||||||||||||
Sbjct 229 TACCATGGCGCAGCCTCGATTCATTCAGTACTTTCCAAAGATACTTTATCCTGTAACTCT 288
Query 227 CTTGCTCAAGGCATTTATTCAGCTTACAATGCTTCTCTGGTTTCTTTTCGTAAAAGTACC 286
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 289 CTTGCTCAAGGCATTTATTCAGTTTACAATGCTTCTCTGGTTTCTTTTCGTTAAAGTACC 348
Query 287 AGCGCCTGACACTTTCTTGGTCCAGAATCCTCCTTCCGTTCCAACCCTAATTGCTGTTAA 346
||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 349 AGCGCCTGACATTTTCTTGGTCCAGAATCCTCCTTCCGTCCCAACTCTAATTGCTGTTAA 408
Query 347 GTGGGCGAGTTCATGGAGACGTGCAGCGTTTGTTGTAGATTGGCATAATTTTGGATATAC 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 GTGGGCGAGTTCATGGAGACGTGCAGCGTTTGTTGTAGATTGGCATAATTTTGGATATAC 468
Query 407 ATTGTTGGCATTGTCTTTAGGAAGAAACAATATGTTTGTATCCTTATACCGCTGG---G- 462
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 469 GTTGTTGGCATTGTCTTTAGGAAGAAACAATTTGCTTGTATCCTTATACCGCTGGTCTGA 528
Query 463 GAA--A----G-A----TGGCAACAGGTTCACTA------A-AA--GCAATGCAACATGA 502
||| | | | ||||||||||||| ||| | || ||||||||||||||
Sbjct 529 GAATCATTATGGAAAGATGGCAACAGGTTCGCTATGTGTCACAAAAGCAATGCAACATGA 588
Query 503 ACTGGATCAGAATTGGGGAGTGAGAGCCCAAGTGTTATATGATCAGCCTCCTGAGTTTTT 562
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 589 ACTGGATCAGAATTGGGGTGTGAGAGCCAAAGTGTTATATGATCAGCCTCCTGAGTTTTT 648
Query 563 CCATCCCGCTTTACTTGAAGAAAGGCATGAGTTGTTTTGCCGAGTGAAAAATGATCTTTG 622
|| ||||||||| |||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 649 CCGTCCCGCTTTGCTTGAAGAAAGGCATGAGTTGTTTTGCCGAGTGAGGAAGGATCTTTG 708
Query 623 CCATCCAATT-------A-G-T---A---G-AGAG--TTGGAAAACCAAGAGCTTAATGA 664
|||||||||| | | | | | |||| |||||||||||||||||||||||
Sbjct 709 CCATCCAATTGGTGTCTATGATTTCATTAGTAGAGAGTTGGAAAACCAAGAGCTTAATGA 768
Query 665 AACCCTTTTTACTACCAAAATTTA-TACTGACATCTCCCTGAAGCAAAACAGACCAGCTC 723
||||||||||||||||||| |||| | |||||||||| ||||||||||||||||||||||
Sbjct 769 AACCCTTTTTACTACCAAA-TTTAATGCTGACATCTCGCTGAAGCAAAACAGACCAGCTC 827
Query 724 TTGTTCTGAGCAGTACAAGCTGGACCCCTGATGAAAATTTTGGTATCCTACTAGAAGCTG 783
||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 828 TTGTTGTGAGTAGTACAAGCTGGACCCCTGATGAAAATTTTGGTATCCTACTGGAAGCTG 887
Query 784 CAGTAATGTATGATCGGCGTGTGGCTGCAAGATCCAAA 821
|||| ||||||||||||||||||||||||||||| |||
Sbjct 888 CAGTGATGTATGATCGGCGTGTGGCTGCAAGATCAAAA 925
Score = 586 bits (317), Expect = 2e-166
Identities = 331/338 (98%), Gaps = 0/338 (0%)
Strand=Plus/Plus
Query 820 AACACCTTTATCCCAATTTGTTGTTCATCATTACAGGTAAAGGACCTGAAAAGGAGATGT 879
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 AACACCATTATCCCAATTTGTTGTTCATCATTACAGGTAAAGGACCTGAAAAGGAGATGT 1016
Query 880 ACGAGGAGAAAATCAAACGCTTAAACCTCAGACATGTGGCATTCCGTACAATGTGGCTCC 939
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1017 ACGAGGAGAAAATCAAACGATTAAACCTTAGACATGTGGCATTCCGTACAATGTGGCTCG 1076
Query 940 CAGCTGAAGATTACCCATTGCTTTTAGGTTCTGCAGATCTCGGTGTCTGCTTACACACTT 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CAGCTGAAGATTACCCATTGCTTTTAGGTTCTGCAGATCTCGGTGTCTGCTTACACACTT 1136
Query 1000 CCTCATCGGGTTTAGACCTTCCCATGAAGGTTGTTGATATGTTTGGATGTGGCCTCCCAG 1059
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CCTCGTCGGGTTTAGACCTTCCCATGAAGGTTGTTGATATGTTTGGATGTGGCCTCCCAG 1196
Query 1060 TTTGCTCGGTTTCCTACTCATGCATTCAAGAACTCGTTAAAGATGGAAAGAATGGACTTT 1119
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1197 TTTGCTCGGTTTCCTACTCATGCATTCAAGAACTCGTTAAAGATGGGAAGAACGGACTTT 1256
Query 1120 TGTTTTCATCTTCATCAGAATTAGCAGATCAATTATTG 1157
||||||||||||||||||||||||||||||||||||||
Sbjct 1257 TGTTTTCATCTTCATCAGAATTAGCAGATCAATTATTG 1294
Score = 327 bits (177), Expect = 1e-88
Identities = 251/282 (89%), Gaps = 23/282 (8%)
Strand=Plus/Plus
Query 1157 GATTCTCTTCAAGGGTTTTCCCGGGAACTGTGATGCCCTAATGTCGCTTAAAGTGGGTGC 1216
||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||
Sbjct 1387 GATTCTCTTCAAGGGTTTTCCAGGGAACTGTGATGCACTAATGTCGCTTAAAGCGGGTGC 1446
Query 1217 AATGGAGACTGGTTCTTCGGGTCGATGGGCTACAGAGTGGGAAGATTGTGCAAAACCTTT 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 AATGGAGACTGGTTCTTCGGGTCGATGGGCTACAGAGTGGGAAGATTGTGCAAAACCTTT 1506
Query 1277 GATCACTCAGGAAAATCCGTCGGCCCTCTCTGTCGTGTCTCAAATAGCAGATTCATGAAA 1336
|||||||||| || || | |||| |||| ||||||||||||||
Sbjct 1507 AATCACTCAGG----TC-GT-G----TCTC-----------AAATTGCAGATTCATGAAA 1545
Query 1337 GAGAAGACTCAAAATCGATGGGCTTGAGAGTTTCTCACA-A-CTGCTTTTGTAGATCCAA 1394
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1546 GAGAAGACTCAAAATCGATGGGCTTGAGAGTTTCTCACACAACTGCTTTTGTAGATCCAA 1605
Query 1395 ATTTTTGTACACAATCATATAGATTACAAGATTGTCTCGAAA 1436
|||||| |||| |||| |||||||||||||||||||||||||
Sbjct 1606 ATTTTTATACAAAATCCTATAGATTACAAGATTGTCTCGAAA 1647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70782768450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5