BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490370
Length=2008
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02100.1 | Symbols: | Heat shock protein DnaJ with tetratri... 2885 0.0
> AT4G02100.1 | Symbols: | Heat shock protein DnaJ with tetratricopeptide
repeat | chr4:930065-932330 FORWARD LENGTH=2085
Length=2085
Score = 2885 bits (1562), Expect = 0.0
Identities = 1910/2065 (92%), Gaps = 75/2065 (4%)
Strand=Plus/Plus
Query 1 ATGAtttttcaaaatctctctcttctctcgtgttttcgactttt-c-ctctctc--atat 56
|||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||
Sbjct 1 ATGATTTTTCAAAATCTCTCTCTTCTCTCGTGTTTTCGACTTTTCCTCTCTCTCTTATAT 60
Query 57 ---tt-tat-tttag-ttt--ttttttttAATTT--CC-G---GATCGAGAAGAGAGAAA 102
|| ||| ||| | ||| |||||||| ||| || | |||||||||||||||||
Sbjct 61 AAATTATATATTTTGCTTTGGTTTTTTTT--TTTCACCGGATCGATCGAGAAGAGAGAAA 118
Query 103 AGTTCTTCTTCTTCTTGTTCTGATTGTTTCACAAGTTTTACGACAATGGCGGTTTACGGA 162
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 119 AGTTCATCTTCTTCTTGTTCTGATTGTTTGACAAGTTTTACGACAATGGCGGTTTACGGC 178
Query 163 GAGAAGAAGCATTGGTGGCTCCGCAACAAGAAGATCGTTGATAAGTACATGAAAGAAGCA 222
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 179 GAGAAGAAGCATTGGTGGCTCCGCAACAAGAAGATCGTTGATAAATACATGAAAGAAGCA 238
Query 223 AAGAATTTAATAGCGAGTCAAGATCCAAACGACGTTAAATCTGCTCTGAATCTTCTGGAA 282
|||| |||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 239 AAGAGTTTAATAGCGAGTCAAGATCCAAACGACGTGAAATCAGCTCTAAATCTTCTGGAA 298
Query 283 TCTGCACTCTCTGTATCTCCTCGTTACGAACTCGCTCTCGAACTCAAAGCCAGATCGCTT 342
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 299 TCTGCACTCTCTGTATCTCCTCGTTACGAACTCGCTCTCGAACTCAAAGCCAGATCCCTT 358
Query 343 CTTTACCTCCGTCGATTCAAAGACGTCGCCGATATGCTTCAGGATTACATTCCTAGCCTT 402
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 359 CTTTACCTCCGTCGATACAAAGACGTCGCCGATATGCTTCAGGATTACATTCCTAGTCTT 418
Query 403 AAACTA----GC--CGGCGAAGATTCCGGCATCGGTTCATCGGAGCTTTCTGTTACTCAT 456
||| || || ||||||||||||||| ||||||||||| ||||||||| ||||||||
Sbjct 419 AAATTAGCCGGCGGCGGCGAAGATTCCGGTATCGGTTCATCTGAGCTTTCTTTTACTCAT 478
Query 457 TCTTCTCGTGAATCTGTCAAACTTCTCAACGATTTGCC--G--A--GTCATCATCATGAC 510
|||||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct 479 TCTTCTCGTGAATCTGTCAAACTTCTCAACGATTTGCCTAGTCATCATCATCATCATGAC 538
Query 511 TCGTCTTTTAAATGCTTCTCTGTCTCTGATTTGAAGAAGAAAGTCATGGCTGGTCTCAGT 570
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 539 TCGTCTTTTAAATGCTTCTCTGTCTCTGATTTGAAGAAGAAAGTCATGGCTGGTCTCACT 598
Query 571 AAAAACTGCGACGAACAAGGGCAATGGAGATATTTGGTTTTAGGTCAAGCTTGTTGCCAT 630
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 599 AAAAACTGCGACGAACAAGGGCAATGGAGATATTTGGTTTTGGGTCAAGCTTGTTGCCAT 658
Query 631 TTAGGTCTAATGGAAGACGCAATGGTTCTTCTTCAAACCGGTAAACGCTTAGCCACCGCC 690
|||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTAGGTTTAATGGAGGATGCAATGGTTCTTCTTCAAACCGGTAAACGCTTAGCCACCGCT 718
Query 691 GCGTTCCGCCGTCAGAGCATTTGCTGGTCTGACGATAGCTTCATTCTCTTCTCCTCCGAA 750
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 719 GCGTTCCGCCGTCAGAGTATTTGTTGGTCTGACGATAGCTTCATTCTCTTCTCCTCCGAA 778
Query 751 GACGGCGGTTCCTCTCCTCCCACCCCCGTCGTCGTAACTTCCGGATCTCAGCCACGATCC 810
|||||||| |||||||||||| || |||||||||||||||||| ||||||||||||||||
Sbjct 779 GACGGCGGCTCCTCTCCTCCCTCCTCCGTCGTCGTAACTTCCGCATCTCAGCCACGATCC 838
Query 811 GAGAGCATCGCTCACGTGTTATCTCACATCAAGCTACTCTTACGACGACGCGCCGCCGCA 870
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 839 GAGAGCATCGCTCACGTGTTATCTCACATCAAGCTACTCTTAAGACGGCGCGCCGCCGCA 898
Query 871 CTCGCCGCTCTCGACGCAGGGCTCTACTCAGAATCAATTCGACATTTCTCAAAAATCTTA 930
|||||||||||||||||||| |||||| ||||||| ||||| ||||||||||||||||||
Sbjct 899 CTCGCCGCTCTCGACGCAGGACTCTACACAGAATCGATTCGCCATTTCTCAAAAATCTTA 958
Query 931 GACAGCCGCCGTGGCGCGCCGCAGGCATTTCTCGCCCAGTGCTTTATGCACCGCGCATCA 990
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 959 GACAGTCGCCGTGGCGCGCCGCAGGGATTTCTCGCCCAGTGCTTTATGCACCGCGCCTCC 1018
Query 991 GCTTACAGATCCGCCGGAAGAATCGCGGAATCAATCGCCGACTGTAACAAAACCCTAGCC 1050
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GCTTACAGATCCGCCGGAAGAATCGCGGAATCAATCGCCGACTGTAACAAAACCCTAGCG 1078
Query 1051 TTAGATCCGTCATGTCTCCAAGCTTTAGAAACCAGAGCCGCATTGCTAGAATCCGTTCGG 1110
||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1079 TTAGATCCGTCGTGTCTCCAAGCTTTAGAAACGAGAGCCGCATTGTTAGAATCCGTTCGG 1138
Query 1111 TGTTTCCCCGATTCGCTTCACGATTTGGAACATCTGAAACTCCTCTACAACTCCATCTTA 1170
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TGCTTCCCCGATTCGCTTCACGATTTGGAACATCTGAAACTCCTCTACAACTCCATCTTA 1198
Query 1171 CGTGACCGGAAACTACCCGGTCCGGTTTGGAAACGGCACAACGTCCGGTACAGAGAAATA 1230
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1199 CGTGACCGGAAACTACCCGGTCCGGTTTGGAAACGGCACAATGTCCGGTACAGAGAAATA 1258
Query 1231 CCGGGAAAATTATGCGTTTTGACCTCGAAGATCCAGCAATTGAAGAC-GAAAATCGCAAA 1289
||||| ||||||||||| || ||| |||| ||||||||||||||| | ||||||||||||
Sbjct 1259 CCGGGGAAATTATGCGTCTTAACCACGAAAATCCAGCAATTGAAG-CAGAAAATCGCAAA 1317
Query 1290 CGGAGAAATCGGAAACGTGGATTACTATGCTCTGATGGGAATCAGACGTGATTGCTCGAG 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CGGAGAAATCGGAAACGTGGATTACTATGCTCTGATGGGAATCAGACGTGATTGCTCGAG 1377
Query 1350 ATCAGAGCTGGATCGAGCTTACTTGTTACTCAATTTAAAGCATAAACCGGAGAGATCAAT 1409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 ATCAGAGCTGGATCGAGCTTACTTGTTACTCAATTTAAAGCATAAACCGGAGAGATCAAT 1437
Query 1410 GTCATTCATTGACCGGTTTGAGCTAACCGATGATGAGGAAGAATTAGACTCGGTTAAGGA 1469
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1438 GTCATTTATTGACCGGTTTGAGTTAACCGATGATGAGGAAGAATTAGACTCGGTTAAGGA 1497
Query 1470 CCGAGCAAGAATGTCAACTCTATTACTATACAGATTGATCCAGAAAGGCTACTCAGTCGT 1529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 CCGAGCAAGAATGTCAACTCTATTACTATACAGATTGATCCAGAAAGGCTACTCAGTCGT 1557
Query 1530 GACAAGTAACATCGCAAC-G-G-AGCAAGCCGCGGAGAAGCAA-CGAAAAGCCGTGGCAG 1585
||||||||||||||| | | | || |||| || | |||| | || |||| | ||
Sbjct 1558 CACAAGTAACATCGCAGCCGTGGAG-AAGCAACGAA-AAGCCATCGCC--GCCGCAGTAG 1613
Query 1586 CG---GAAACTCATCGGAGTAATAACATCGAAACGCCGGTCAGAGCGGTCGCGGTTGCGG 1642
|| ||| ||||||||||||||| ||||||||||||| | ||||||||||||||||| |
Sbjct 1614 CGACTGAATCTCATCGGAGTAATATCATCGAAACGCCGATTAGAGCGGTCGCGGTTGCTG 1673
Query 1643 TGAACAGTAATAGTACTAATAACAATACGAATGTGGTGAAAGGAGTGTTTTGTAGAGATT 1702
|||||||||||| || |||| | ||||||||||||||||||||||||||||||||
Sbjct 1674 TGAACAGTAATA--AC-AATA-C-----GAATGTGGTGAAAGGAGTGTTTTGTAGAGATT 1724
Query 1703 TGACAGTGGTTGGGAGTTTGATTGCACGGACCGGGTTTAATCAACCGATTCCGGTTAAAT 1762
|||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1725 TGACGGTGGTTGGGAGTTTGATTGCGCGGACCGGGTTTAACCAACCGATTCCGGTTAAAT 1784
Query 1763 ACGAAGCGCTTAGTTGCTGAAATTGTTTGACCGTG-----------CT--GCGTTTTGTA 1809
||||||||||||||||||||| ||| ||||||||| || ||||||||||
Sbjct 1785 ACGAAGCGCTTAGTTGCTGAATTTGATTGACCGTGTGAAGGTGTTTCTCTGCGTTTTGTA 1844
Query 1810 CAAAAGAAAAGACAGA--A-CATCATCACTATTCACATTGGATGAAATTATGGATAATAA 1866
|||||||||||||||| | |||||||||||||| ||||||||||||||||||||| |||
Sbjct 1845 CAAAAGAAAAGACAGATCATCATCATCACTATTCGCATTGGATGAAATTATGGATATTAA 1904
Query 1867 TAATAT-T-GTCTGCCCGAGAATTTTGGAGCTTTCTCTCTTGTTTCTTTCTTCTTTATTC 1924
||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1905 GAATATATTGTCTGCCCGAGAATTTTGGAGCTTTCTCTCTTGTTTGTTTCTTCTTTATTC 1964
Query 1925 TTCACTATGCCTAAACGACAAAACCCaaaaaaaaaaGGTGATCCATAATATTATGAAAAA 1984
|||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||| |
Sbjct 1965 TTCACTATGCCTAAACGACAAAACCCAAAATAAAAAG-TGAACCATAATATTATGAAATA 2023
Query 1985 GTTT-CATCACTATTCACATTTGTG 2008
||| ||||||||||||||||||||
Sbjct 2024 -TTTACATCACTATTCACATTTGTG 2047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99497480190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5