BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490371
Length=797
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02090.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1109 0.0
> AT4G02090.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: cellular_component unknown; EXPRESSED
IN: root; Has 132 Blast hits to 132 proteins in 12 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr4:923100-923916 FORWARD LENGTH=817
Length=817
Score = 1109 bits (600), Expect = 0.0
Identities = 742/807 (92%), Gaps = 24/807 (3%)
Strand=Plus/Plus
Query 1 TAGGAGCATTCTGATCTGAGAATGGGTAACGTAGCCGGTTCCCGAAAATTGAATGCGGCA 60
||||| || | ||||||||||||||||||||| || ||||||||||| ||| |||||||
Sbjct 2 TAGGATCACTGTGATCTGAGAATGGGTAACGTTGCTGGTTCCCGAAAGTTGGATGCGGCC 61
Query 61 TCGATGGCTGCTAGAAAAGTTGTGTTATCCGACGGAAGAGTACAAAACTTAGAGGAAGAG 120
||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 62 GGGATGGCTGCCGGAAAAGTTGTATTATCCGACGGAAGGGTACAAAACTTAGAGGAAGAG 121
Query 121 ACGACGGTGGCTGAGATTATGCTGGAAAATCCGCAACACGTGGTTGTCGAATTTGATCCG 180
|| |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 122 ACAACGGTGGCTGAGATTATGCTAGAAAATCCGCAACATGTGGTCGTCGAATTTGATCCG 181
Query 181 TCATCGATATCATTCAACAACGACGCAAAAACGGTGAAGAAG-AAGCTGGCTCCTTTGCC 239
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 182 TCATCGATATCATTCAACAACGACGCAAAAACGGTGAAG-AGAAAGCTGGCTCCTTTGCC 240
Query 240 CGCTGATAAAACTCTCGAGCCGGGGAAAATCTATTTGGTGCTTCCCGCCAAAAGAAGCAG 299
||| || ||||| |||||||| |||||||||||||| ||||||||||||||||||||| |
Sbjct 241 CGCGGACAAAACACTCGAGCCAGGGAAAATCTATTTAGTGCTTCCCGCCAAAAGAAGCGG 300
Query 300 TGGCAGCGCAGCCAAATCATCATCAGCATCGGCGGTGCTCACGTCAGAGGAGTTGCGGAA 359
|||||| || | |||| ||||| ||||||||||||| |||||||||||| |||||||
Sbjct 301 TGGCAGGGCCG-CAAA--ATCAT---CATCGGCGGTGCTGACGTCAGAGGAGATGCGGAA 354
Query 360 AATGCTATTTAGCGCCACGGCAATGGTAAGGTCATCGTTTAGCTACTATGAAGGGATACT 419
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 355 AATGCTGTTTAGCGCCACGGCAATGGTAAGGTCATCGTTTAGCTACTATGAAGGGATTCT 414
Query 420 TCCTTGGTTTACTACTAGAAGTTATAAGAACAATATTCCGGCGACTGATGCGGTGGTTGC 479
||||||||||||||||||||||||||||||||| | ||||||||||||| |||| |||||
Sbjct 415 TCCTTGGTTTACTACTAGAAGTTATAAGAACAACAATCCGGCGACTGATACGGTCGTTGC 474
Query 480 TGCTACGTCAGTTGGAAGATTGGAGGCAGAGATGGAGGAGGAAGAGAGGCCGGAGTTTTT 539
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 475 TGCTACGTCGGTTGGAAGATTGGAGGCAGAGATGGAGGAGGAAGATAGGCCGGAGTTTTT 534
Query 540 GAGCCGGCAATTGTCGGGAAGAGGGTGGAAACCAAGCTTGGATCCTATCAAAGAGAAGAA 599
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 535 GAGCCGGCAATTGTCGGGAAGAGGGTGGAAACCAAGCTTGGATCCTATCAGAGAGAAGAA 594
Query 600 AGCAAAGAAGAAAATCCATCAACGGTTCTTGTTATAAATACGATGTCGTTTTGGTA-AAA 658
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||
Sbjct 595 AGCAAAGAAGAAAATCCATCAACGGTTCTTGTTATAAATACGTTGTCGTTT-GGTTTAAA 653
Query 659 TCCTTTTCTAAATGATTTTGTTGTATTGGTGTGTGTTTTGTGCTAAATTGTGTGTA---- 714
|||||||||||||||| |||| ||| | |||||||||||||||||||||||||
Sbjct 654 TCCTTTTCTAAATGATCTTGT---ATT--T-TGTGTTTTGTGCTAAATTGTGTGTATTGT 707
Query 715 --A--GATCGTTTCTTAACGTGCGTATGTGTCTTGTACGCCGGTCACGAGAAACTCACGT 770
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 GTAAAGATCGTTTCTTAACGTGCGTATGTGTCTTGTACGCCGGTCACGAGAAACTCACGT 767
Query 771 GAATTCCAAAACCTCTGTTTCGTTCGT 797
||||||||||||||||||||| |||||
Sbjct 768 GAATTCCAAAACCTCTGTTTCATTCGT 794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38780761484
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5