BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490373
Length=733
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02075.1 | Symbols: PIT1 | RING/FYVE/PHD zinc finger superfa... 957 0.0
> AT4G02075.1 | Symbols: PIT1 | RING/FYVE/PHD zinc finger superfamily
protein | chr4:913419-916476 REVERSE LENGTH=855
Length=855
Score = 957 bits (518), Expect = 0.0
Identities = 615/660 (93%), Gaps = 14/660 (2%)
Strand=Plus/Plus
Query 9 AGATGGGAGATGTGATTTTGTTCATCGACGATACGAATTCGAAAGTGAGAATCTCGCGTT 68
||||||||||||||||||||||||| || |||||||| ||||||||||||||| ||||||
Sbjct 61 AGATGGGAGATGTGATTTTGTTCATTGATGATACGAAATCGAAAGTGAGAATCACGCGTT 120
Query 69 GCAGAATTTGTCATGAAGAAGAAGAAGAAAGTTTCTTCGAAGTTCCTTGTGCTTGTTCAG 128
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 GCAGAATTTGCCATGAAGAAGAAGAAGAAAGTTTCTTCGAAGTTCCATGTGCTTGTTCAG 180
Query 129 GCACCGTTAAGTTCGCACACAGAAATTGCATACAACGTTGGTGTGATGAAAAAGGAAACA 188
||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||
Sbjct 181 GCACCGTTAAGTTCGCACATAGAAACTGCATACAACGTTGGTGTAATGAAAAAGGAAACA 240
Query 189 CAACTTGTGAAATCTGTCTTCAGGTTTATAGAGATGGATATACAGCAGTTTCAAAACAAT 248
||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||
Sbjct 241 CAACTTGTGAAATCTGTCTTCAGGTGTATAAAGATGGATATACAGCAGTTTTAAAACAAT 300
Query 249 CTAAATTCATTGAAGAAGAAGTCATAATCAGAGTAAATGGAC------GAAGAAGAAGTA 302
| ||||| |||||| ||||||||| ||||||||||||||||| ||||||||||||
Sbjct 301 CGAAATTGATTGAACAAGAAGTCACAATCAGAGTAAATGGACGAAGAAGAAGAAGAAGTA 360
Query 303 GAAGATTAGTGACTATAGCTGAATCAGAT-TTATCTCAGTGTAATTCTGTTGCTAATAGA 361
||||||||||| ||||||||||||| ||| || ||||||||||||||||||||| |||||
Sbjct 361 GAAGATTAGTGTCTATAGCTGAATCCGATATT-TCTCAGTGTAATTCTGTTGCTGATAGA 419
Query 362 GGAGCTTCGTTTTGCAGATCATTAACTTTTATTCTTTCAGTATTTTTGCTGATGAAACAT 421
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 420 GGAGCTTCGTTTTGCAGATCATTAACTTTTACTCTTTCAGTATTTTTGCTGATGAAACAT 479
Query 422 ACATTCGATGTGACTTATGGAACCGAAGAATATCCATTCTCTGTATTTACGGTACTAACA 481
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACATTCGATGTGATTTACGGAACCGAAGAATATCCATTCTCTGTATTTACGGTACTAACA 539
Query 482 TTAAAGGCCATAGGGATTTTATTGCCAATGTTCATTATAATTCGAACAATCTCAACTATT 541
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTAAAGGCCATTGGGATACTATTGCCAATGTTCATTATAATTCGAACAATCTCAACTATT 599
Query 542 CAGAAATCTCTCCGTCGTC-T--TCAGTATCTTGAATCTGAAGAAGA---TACGTTGAGC 595
|||||| |||| ||||||| | ||| |||| ||||||||||||||| || |||||||
Sbjct 600 CAGAAAACTCTTCGTCGTCGTCATCAATATCCTGAATCTGAAGAAGAAGATAGGTTGAGC 659
Query 596 TCTGACGACGACGATGACTTGgaagaagaagaagaagaGCAACAACAACATTTGGCTTAA 655
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 660 TCTGACGACGACGATGACTTGGAAGAAGAAGATGAAGAGCAACAACAACATTTGGCTTAA 719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35565776076
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5