BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490375
Length=2257
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02060.1 | Symbols: PRL, MCM7 | Minichromosome maintenance (... 3651 0.0
> AT4G02060.1 | Symbols: PRL, MCM7 | Minichromosome maintenance
(MCM2/3/5) family protein | chr4:901388-905590 FORWARD LENGTH=2540
Length=2540
Score = 3651 bits (1977), Expect = 0.0
Identities = 2165/2256 (96%), Gaps = 12/2256 (1%)
Strand=Plus/Plus
Query 1 ATCTACAACCCTTTTACCGCCCAATTTCGCAGTCACTGGTTCATTCCTTCCTCTTCCTCT 60
||||||||||||||||||||||||||| ||||||||||||||||||||| || || |||
Sbjct 1 ATCTACAACCCTTTTACCGCCCAATTTTGCAGTCACTGGTTCATTCCTT--TC-TCTTCT 57
Query 61 TCGAGTCTCCctctctctctctctctctAAACCCAAATTTT-AAACCATGAAAGACTATG 119
|| || || || | |||||||||| |||||| |||| |||||||||||||| | |
Sbjct 58 TC----CT--CT-TC-CACTCTCTCTCTCGACCCAAGTTTTGAAACCATGAAAGACCACG 109
Query 120 ATTTCGACGGCGACAAAGTGCTTGCCAAGGAATTTCTTGAGAATTTCGCCGACGCTAATG 179
|||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||
Sbjct 110 ATTTCGACGGCGACAAAGGGCTTGCCAAGGGATTTCTCGAGAATTTCGCCGACGCTAATG 169
Query 180 GCAGATCTAAGTACATGGAGATTCTCCAAGACGTTTCAAATCGTAAGATTCGAGCTATTC 239
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 170 GCAGATCTAAGTACATGGAGATTCTCCAAGAGGTTTCAAATCGTAAGATTCGAGCTATTC 229
Query 240 AGGTCGATCTTGATGACTTATTCAATTATAAGGGTGATATTGAGGACTTTCTGGGACGGT 299
| |||||||| |||||||||||||||||||| | ||| | |||||| ||||| |||||||
Sbjct 230 AAGTCGATCTCGATGACTTATTCAATTATAAAGATGAAAGTGAGGAGTTTCTCGGACGGT 289
Query 300 TGACTGAAAACACTCGCCGATATGTTTCCATTTTCTCCGCTGCTGTTGACGAGCTCCTAC 359
|||| ||||||||||||||||||||||| ||||||||||| |||||||||||| | |||
Sbjct 290 TGACGGAAAACACTCGCCGATATGTTTCAATTTTCTCCGCCGCTGTTGACGAGTTGTTAC 349
Query 360 CCGAGCCAACGGAAGCGTTTCCAGATGATGATCATGATATTCTGATGACTCAGAGAGCAG 419
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 350 CCGAACCAACGGAAGCGTTTCCAGATGATGATCATGATATTCTCATGACTCAGAGAGCAG 409
Query 420 AGGATGGGACTGATAATGCAGATGTTTCTGATCCGCATCAGCAGATTCCTTCTGAGATTA 479
| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 410 ATGATGGGACTGATAATCCAGATGTTTCTGATCCTCATCAGCAGATTCCTTCTGAGATTA 469
Query 480 AAAGATTTTATGAGGTTTATTTTAAAGCTGCTTCAAAGGGAAGGCCATCTACCATCAGGG 539
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 470 AAAGATATTATGAGGTTTATTTTAAAGCTCCTTCAAAGGGAAGGCCATCTACCATCAGGG 529
Query 540 AGGTTAAGGCTTCACACATTGGGCAACTTGTTAGGATATCTGGTATTGTGACCCGTTGTT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 AGGTTAAGGCTTCACACATTGGGCAACTTGTTAGGATATCTGGTATTGTGACCCGTTGTT 589
Query 600 CCGATGTCAAGCCATTGATGGCGGTTGCTGTTTACACATGCGAAGAATGTGGTCATGAAA 659
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 590 CCGATGTCAAGCCATTGATGGCGGTTGCTGTTTACACATGTGAAGATTGTGGTCATGAGA 649
Query 660 TTTACCAGGAAGTTACATCTAGAGTCTTCATGCCTTTGTTTAAGTGCCCCTCCAGCCGTT 719
|||||||||||||||||||||||||||||||||||||||||||||| || || || || |
Sbjct 650 TTTACCAGGAAGTTACATCTAGAGTCTTCATGCCTTTGTTTAAGTGTCCTTCTAGTCGCT 709
Query 720 GTCGTCTTAACAGTAAAGCCGGGAATCCTATTCTTCAGCTCAGAGCTTCAAAGTTTCTTA 779
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 710 GTCGTCTTAATAGTAAAGCCGGGAATCCTATTCTTCAGCTCAGAGCATCAAAGTTTCTAA 769
Query 780 AGTTTCAGGAGGCCAAGATGCAAGAGTTGGCTGAACATGTTCCCAAAGGGCATATTCCGA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 AGTTTCAGGAGGCCAAGATGCAAGAGTTGGCTGAACATGTTCCCAAAGGGCATATTCCGA 829
Query 840 GGTCTATGACTGTTCATCTAAGAGGAGAGTTGACAAGAAAGGTATCACCAGGTGACGTTG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 830 GGTCTATGACTGTTCATCTAAGAGGAGAGTTGACAAGAAAGGTATCACCAGGTGATGTTG 889
Query 900 TTGAATTCTCAGGGATTTTTCTTCCCATTCCTTACACTGGGTTTAAGGCACTTCGAGCTG 959
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 TTGAGTTCTCAGGGATTTTTCTTCCCATTCCTTACACTGGGTTTAAGGCACTTCGAGCTG 949
Query 960 GCTTAGTAGCAGACACCTATCTGGAAGCAACGTCTGTTACTCATTTCAAGAAGAAATATG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 GCTTAGTAGCAGACACCTATCTGGAAGCAACGTCTGTTACTCATTTCAAGAAGAAATATG 1009
Query 1020 AGGAATATGAGTTTCAGAAAGATGAGGAAGAACAGATTGCACGTTTGGCTGAGGATGGTG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 AGGAATATGAGTTTCAGAAAGATGAGGAAGAACAGATTGCACGTTTGGCTGAGGATGGTG 1069
Query 1080 ACATTTACAATAAGCTGTCGCGATCCCTGGCCCCTGAGATTTATGGACATGAAGACATTA 1139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1070 ACATATACAATAAGCTGTCGCGATCCCTGGCCCCTGAGATTTATGGACATGAAGATATTA 1129
Query 1140 AGAAAGCTTTGCTTCTCCTTCTTGTGGGTGCTCCTCACAGGCAATTAAAGGATGGGATGA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1130 AGAAAGCTTTGCTTCTCCTTCTTGTGGGTGCTCCTCACAGGCAATTAAAGGATGGAATGA 1189
Query 1200 AGATTAGAGGAGATGTGCATATATGTCTGATGGGTGATCCTGGAGTTGCCAAAAGTCAAC 1259
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 1190 AGATTAGAGGAGATGTGCATATCTGTCTGATGGGTGATCCTGGAGTTGCCAAGAGTCAGC 1249
Query 1260 TTCTCAAGCACATTATAAATGTTGCTCCAAGGGGAGTCTACACAACCGGCAAAGGTAGCA 1319
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1250 TTCTCAAGCACATTATAAATGTTGCTCCAAGGGGAGTCTACACAACAGGCAAAGGTAGCA 1309
Query 1320 GTGGAGTTGGTCTAACTGCCGCTGTTATGAGAGATCAAGTAACAAATGAGATGGTTTTAG 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 GTGGAGTTGGTCTAACTGCCGCTGTTATGAGAGATCAAGTAACAAATGAGATGGTTTTAG 1369
Query 1380 AAGGAGGAGCACTGGTGCTTGCTGACATGGGAATCTGTGCAATTGATGAGTTTGATAAGA 1439
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 AAGGAGGAGCACTGGTGCTGGCTGACATGGGAATCTGTGCAATTGATGAGTTTGATAAGA 1429
Query 1440 TGGATGAATCAGATCGTACTGCAATTCATGAAGTCATGGAGCAGCAAACTGTAAGCATTG 1499
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1430 TGGATGAATCAGATCGTACTGCTATTCATGAGGTCATGGAGCAGCAAACTGTAAGCATTG 1489
Query 1500 CAAAAGCTGGGATTACCACGTCTTTGAACGCTCGAACAGCTGTTCTTGCCGCAGCCAATC 1559
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1490 CAAAAGCTGGGATTACCACGTCTTTGAATGCTCGAACAGCTGTTCTTGCTGCAGCCAATC 1549
Query 1560 CAGCCTGGGGAAGATATGATTTGCGAAGAACTCCTGCTGAAAACATAAATCTTCCACCAG 1619
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 1550 CAGCCTGGGGAAGATATGATTTGCGAAGAACTCCAGCTGAAAACATTAATCTTCCACCGG 1609
Query 1620 CCCTTCTTTCAAGATTCGATCTGCTGTGGTTGATCTTAGATCGAGCTGACATGGACAGTG 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 CCCTTCTTTCAAGATTCGATCTGCTGTGGTTGATCTTAGATCGAGCTGACATGGACAGTG 1669
Query 1680 ACCTTGAATTGGCTAAGCATGTGCTTCACGTACATCAGACAGAAGAATCTCCTGCGCTTG 1739
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 ACCTTGAATTGGCAAAGCATGTGCTTCACGTACATCAGACAGAAGAATCTCCTGCGCTTG 1729
Query 1740 GTTTCGAGCCGCTGGAACCCAATATTCTCCGTGCATACATTTCAGCTGCGAGGAGACTAT 1799
|||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| |||
Sbjct 1730 GTTTCGAGCCTCTGGAACCCAACATTCTCCGTGCATACATTTCAGCTGCAAGGAGATTAT 1789
Query 1800 CACCATATGTTCCAGCAGAGTTGGAGGAATATATAGCAACAGCTTATTCCAGCATCAGGC 1859
||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1790 CACCATACGTCCCAGCAGAGTTGGAGGAATATATAGCAACTGCTTATTCCAGCATCAGGC 1849
Query 1860 AAGAAGAAGCGAGATCAAATACTCCTCATTCTTACACAACAGTGAGGACACTGCTCAGCA 1919
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1850 AAGAAGAAGCGAAATCAAATACTCCTCATTCTTACACAACAGTGAGGACACTGCTCAGCA 1909
Query 1920 TTCTGCGCATATCCGCTGCATTAGCAAGGTTGAGATTCTCAGAATCAGTGGCACAGAGTG 1979
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1910 TTCTGCGCATATCCGCTGCATTAGCAAGGTTGAGATTTTCAGAATCAGTGGCACAGAGTG 1969
Query 1980 ATGTGGATGAGGCGCTTAGACTAATGCAGATGTCAAAAATATCATTGTATGCGGATGACC 2039
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1970 ATGTGGATGAGGCGCTTAGACTAATGCAGATGTCGAAAATATCATTGTATGCTGATGACC 2029
Query 2040 GACAGAAAGCAGGACTGGATGCAATATCAGACACATACTCAATCATAAGAGACGAAGCTG 2099
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2030 GACAAAAAGCAGGACTAGATGCAATATCAGACACATACTCAATCATAAGAGACGAAGCTG 2089
Query 2100 CAAGATCAAACAAGACCCATGTGAGCTACGCAAATGCTCTGAACTGGATCTCCAGAAAGG 2159
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2090 CAAGATCAAAAAAGACCCATGTGAGCTACGCAAATGCCCTGAACTGGATCTCCAGAAAGG 2149
Query 2160 GATACAGTGAGGCTCAGCTAAAGGAGTGTTTGGAGGAATATGCAGCTTTGAATGTTTGGC 2219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2150 GATACAGTGAGGCTCAGCTAAAGGAGTGTTTGGAGGAATATGCAGCTTTGAATGTTTGGC 2209
Query 2220 AGATCGATCCTAACACCTTTGACATCCGTTTTATCT 2255
|||| |||||| ||||||||||||||||||||||||
Sbjct 2210 AGATTGATCCTCACACCTTTGACATCCGTTTTATCT 2245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111997415895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5