BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490376 Length=708 Score E Sequences producing significant alignments: (Bits) Value AT4G02040.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 582 1e-165 > AT4G02040.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30 Blast hits to 30 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:897547-898370 FORWARD LENGTH=824 Length=824 Score = 582 bits (315), Expect = 1e-165 Identities = 428/478 (90%), Gaps = 26/478 (5%) Strand=Plus/Plus Query 1 ATGGCCACTGCGATGGTTC-T-CTCTTCTCAAAACCATCGATTCGATCACGAAACCCTAA 58 |||||||||||||| | || | |||||||||||||||||||||||| ||| ||||||||| Sbjct 17 ATGGCCACTGCGAT-G-TCTTACTCTTCTCAAAACCATCGATTCGAGCACCAAACCCTAA 74 Query 59 TCCACCGTAACCCTAATTCTCGCCTTTGCCGCCACTCTTCCGCTGCTTCAACGGCTCCTC 118 |||||||||||||||| |||| |||||||| || || ||||||| ||||||| Sbjct 75 TCCACCGTAACCCTAAGCCTCGTCTTTGCCG-CA-------ACT-CTTCAACAGCTCCTC 125 Query 119 GCCGACGCAAGCGAAGCCCTACGGTTGTTAAATCTCCGGCGGCGAATACC-AATCTTGTA 177 |||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 126 GCCGACGCAAGCAAAGCCCTACGGTTGTTAAATCTCCGGCGGCGAAT-CCAAATCTTGTA 184 Query 178 ATGGAACAAGTCAAGATCCTCAAACGCGGTGAGACATTGAGTGCG-TT--TAAGAAGAAG 234 ||||||||||||||||||||||||||||||||||||||||| ||| || |||||| ||| Sbjct 185 ATGGAACAAGTCAAGATCCTCAAACGCGGTGAGACATTGAGCGCGTTTAATAAGAACAAG 244 Query 235 GAAAACTTTAGCCCCGATGATACAAGACGACCTGTTTTGAAGATGATTAAAGATGTTGAT 294 |||||| ||||| |||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 245 GAAAACATTAGCTCCGACGATACAAGACGACCTGTTTTGAAGATGATAAAAGATGTTGAT 304 Query 295 CTAATTGTATCGTCCACTAATAGAATTGGACCTGAACCAGAGATTTTGATGAAACAGATC 354 || ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 305 CTGATTGTATCGGCTACTAATAGAATTGGACCTGAACCAGAGATTTTGATGAAACAGATC 364 Query 355 GGAGCTTCTAAAAGATTGCAGAAG-TTCGCCGGAGCTATTTGCTCTATTTCGCCGCTTCC 413 ||||||| | ||||||||| | ||||||||||||| ||||||| ||||||||| ||| Sbjct 365 GGAGCTT-TGG--GATTGCAGA-GCTTCGCCGGAGCTAATTGCTCTCTTTCGCCGCCTCC 420 Query 414 AAGCTGTGTTCCGATTCCATGTTTCTTAGGGA--A-GAACAATCTCCTTATTTAGATC 468 |||||||||||| ||||||||||||||||||| | ||||||||||||| |||||||| Sbjct 421 AAGCTGTGTTCCAATTCCATGTTTCTTAGGGACGAAGAACAATCTCCTTGTTTAGATC 478 Score = 215 bits (116), Expect = 5e-55 Identities = 227/274 (83%), Gaps = 33/274 (12%) Strand=Plus/Plus Query 467 TCTTTCGATGGTCTTGTAAGAGCAGATTTGTGAAG-AATCCTGAGAAAGAGAGTAAACAA 525 ||||| |||||||| |||||||||||| ||||||| |||||||||| ||||||||||||| Sbjct 519 TCTTTTGATGGTCTCGTAAGAGCAGATGTGTGAAGAAATCCTGAGATAGAGAGTAAACAA 578 Query 526 ATTTGTTTGTTTATCTC-----A-AAGAAGAAGATGGAGAATGTGATCACAAAACGCCAA 579 || | |||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 579 ATCTCTTTGTTTATCTCAAAGAAGAAGAAGAAGATGGAGAATGTGATCACAAAACGCCAA 638 Query 580 TTGCAACCAAAAT-TT------GTAGTCT-GTGTTTTGGTGTAACAGTCACTGTGACTCT 631 ||||||||||||| || ||| || |||||||||||||||||||||||||||| | Sbjct 639 TTGCAACCAAAATCTTTACTCTGTAATCGAGTGTTTTGGTGTAACAGTCACTGTGACTAT 698 Query 632 TTTCTATGGCTTTT-----G----G------ATTTTGAATTTTGTAGTTGTCACTTTTCA 676 |||| || |||||| | | |||||||| ||||||||||||||||| || Sbjct 699 TTTCAATCGCTTTTTTTTAGTTTTGTTTCGGATTTTGAAGTTTGTAGTTGTCACTTT-CA 757 Query 677 CATG--ATTCAAATCTCTTTTTATGCAATAAAAA 708 |||| |||||||||||| |||||||||||||| Sbjct 758 CATGGGATTCAAATCTCTCCTTATGCAATAAAAA 791 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34309922401 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5