BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490376
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02040.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 582 1e-165
> AT4G02040.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; Has 30 Blast hits to 30 proteins
in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr4:897547-898370 FORWARD LENGTH=824
Length=824
Score = 582 bits (315), Expect = 1e-165
Identities = 428/478 (90%), Gaps = 26/478 (5%)
Strand=Plus/Plus
Query 1 ATGGCCACTGCGATGGTTC-T-CTCTTCTCAAAACCATCGATTCGATCACGAAACCCTAA 58
|||||||||||||| | || | |||||||||||||||||||||||| ||| |||||||||
Sbjct 17 ATGGCCACTGCGAT-G-TCTTACTCTTCTCAAAACCATCGATTCGAGCACCAAACCCTAA 74
Query 59 TCCACCGTAACCCTAATTCTCGCCTTTGCCGCCACTCTTCCGCTGCTTCAACGGCTCCTC 118
|||||||||||||||| |||| |||||||| || || ||||||| |||||||
Sbjct 75 TCCACCGTAACCCTAAGCCTCGTCTTTGCCG-CA-------ACT-CTTCAACAGCTCCTC 125
Query 119 GCCGACGCAAGCGAAGCCCTACGGTTGTTAAATCTCCGGCGGCGAATACC-AATCTTGTA 177
|||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 126 GCCGACGCAAGCAAAGCCCTACGGTTGTTAAATCTCCGGCGGCGAAT-CCAAATCTTGTA 184
Query 178 ATGGAACAAGTCAAGATCCTCAAACGCGGTGAGACATTGAGTGCG-TT--TAAGAAGAAG 234
||||||||||||||||||||||||||||||||||||||||| ||| || |||||| |||
Sbjct 185 ATGGAACAAGTCAAGATCCTCAAACGCGGTGAGACATTGAGCGCGTTTAATAAGAACAAG 244
Query 235 GAAAACTTTAGCCCCGATGATACAAGACGACCTGTTTTGAAGATGATTAAAGATGTTGAT 294
|||||| ||||| |||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 245 GAAAACATTAGCTCCGACGATACAAGACGACCTGTTTTGAAGATGATAAAAGATGTTGAT 304
Query 295 CTAATTGTATCGTCCACTAATAGAATTGGACCTGAACCAGAGATTTTGATGAAACAGATC 354
|| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 CTGATTGTATCGGCTACTAATAGAATTGGACCTGAACCAGAGATTTTGATGAAACAGATC 364
Query 355 GGAGCTTCTAAAAGATTGCAGAAG-TTCGCCGGAGCTATTTGCTCTATTTCGCCGCTTCC 413
||||||| | ||||||||| | ||||||||||||| ||||||| ||||||||| |||
Sbjct 365 GGAGCTT-TGG--GATTGCAGA-GCTTCGCCGGAGCTAATTGCTCTCTTTCGCCGCCTCC 420
Query 414 AAGCTGTGTTCCGATTCCATGTTTCTTAGGGA--A-GAACAATCTCCTTATTTAGATC 468
|||||||||||| ||||||||||||||||||| | ||||||||||||| ||||||||
Sbjct 421 AAGCTGTGTTCCAATTCCATGTTTCTTAGGGACGAAGAACAATCTCCTTGTTTAGATC 478
Score = 215 bits (116), Expect = 5e-55
Identities = 227/274 (83%), Gaps = 33/274 (12%)
Strand=Plus/Plus
Query 467 TCTTTCGATGGTCTTGTAAGAGCAGATTTGTGAAG-AATCCTGAGAAAGAGAGTAAACAA 525
||||| |||||||| |||||||||||| ||||||| |||||||||| |||||||||||||
Sbjct 519 TCTTTTGATGGTCTCGTAAGAGCAGATGTGTGAAGAAATCCTGAGATAGAGAGTAAACAA 578
Query 526 ATTTGTTTGTTTATCTC-----A-AAGAAGAAGATGGAGAATGTGATCACAAAACGCCAA 579
|| | |||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 579 ATCTCTTTGTTTATCTCAAAGAAGAAGAAGAAGATGGAGAATGTGATCACAAAACGCCAA 638
Query 580 TTGCAACCAAAAT-TT------GTAGTCT-GTGTTTTGGTGTAACAGTCACTGTGACTCT 631
||||||||||||| || ||| || |||||||||||||||||||||||||||| |
Sbjct 639 TTGCAACCAAAATCTTTACTCTGTAATCGAGTGTTTTGGTGTAACAGTCACTGTGACTAT 698
Query 632 TTTCTATGGCTTTT-----G----G------ATTTTGAATTTTGTAGTTGTCACTTTTCA 676
|||| || |||||| | | |||||||| ||||||||||||||||| ||
Sbjct 699 TTTCAATCGCTTTTTTTTAGTTTTGTTTCGGATTTTGAAGTTTGTAGTTGTCACTTT-CA 757
Query 677 CATG--ATTCAAATCTCTTTTTATGCAATAAAAA 708
|||| |||||||||||| ||||||||||||||
Sbjct 758 CATGGGATTCAAATCTCTCCTTATGCAATAAAAA 791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34309922401
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5