BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490379 Length=1633 Score E Sequences producing significant alignments: (Bits) Value AT4G01990.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2318 0.0 > AT4G01990.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:871145-872913 REVERSE LENGTH=1660 Length=1660 Score = 2318 bits (1255), Expect = 0.0 Identities = 1514/1639 (92%), Gaps = 17/1639 (1%) Strand=Plus/Plus Query 1 AAAATTCAAAATCCGTAAATCTGATAATGTACTCCGTTTCACGTCTCGCGAGGAGGTTCT 60 ||||||||||||||||||||||||| ||| | ||||||||||| |||||||||||||||| Sbjct 6 AAAATTCAAAATCCGTAAATCTGATGATGCATTCCGTTTCACGGCTCGCGAGGAGGTTCT 65 Query 61 GTGCGACGCTCGCTGCTTCTCCGGCGGCGATTAGCGGCGAGGCTGCTGCTTCTGTTCCGA 120 |||| ||||||||| || || |||||| |||||||||||||||||||||||||||||||| Sbjct 66 GTGCAACGCTCGCTACTGCTACGGCGGAGATTAGCGGCGAGGCTGCTGCTTCTGTTCCGA 125 Query 121 CGAAGGCGAAAAAGAATCCATCGGTATACAAGAAACTCTCAAGTCTTGGCACGA--GG-G 177 |||||||||||||| ||| || ||||||||||||||||||| |||||||||| || | Sbjct 126 CGAAGGCGAAAAAGCATCGGTCAATATACAAGAAACTCTCAAGCCTTGGCACGAGGGGAG 185 Query 178 GTGGGAAAATGGAGGAAACGCTAAATCAATTCGTCATGGAAGGTGTACCTGTTAAAAAAC 237 | |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| Sbjct 186 GAGGGAAAATGGAGGAAACGCTAAATCAGTTCGTCATGGAAGGCGTACCTGTCAAAAAAC 245 Query 238 ACGAGCTTATTCGCTACGCAAAGGATCTTCGCAAGTTTCGTCAACCACAACGCGCCCTCG 297 |||| || |||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 246 ACGACCTCATTCGCTACGCAAAGGATCTTCGCAAGTTTCGTCAACCTCAACGCGCTCTCG 305 Query 298 AGATCTTTGAGTGGATGGAAAGAAAAGAAATCGTC-TTTACTGGCAGCGATCACGCAATT 356 ||||||||||||||||||||||||| ||||| | | |||||||||||||||||||| ||| Sbjct 306 AGATCTTTGAGTGGATGGAAAGAAAGGAAATAG-CGTTTACTGGCAGCGATCACGCGATT 364 Query 357 CGTTTGGATCTTATTGCGAAGACTAAAGGCTTAGAGGCGGCGGAAACCTACTTTAACAGT 416 |||||| |||| ||||| |||| |||||||||||||||||| || |||||||| |||||| Sbjct 365 CGTTTGAATCTAATTGCAAAGAGTAAAGGCTTAGAGGCGGCTGAGACCTACTTCAACAGT 424 Query 417 TTAAACGATTCTATTAAGAATCAGTCGACTTATGGTTCGC-TATTGAACTGCTACTGCGT 475 ||| |||||||||||||||||||||| ||||||||||| | |||||||||| ||||| || Sbjct 425 TTAGACGATTCTATTAAGAATCAGTCCACTTATGGTTC-CTTATTGAACTGTTACTGTGT 483 Query 476 GGAAAAGGAGGAAGAGAAGGCAAAGGCTCATTTTGAAAACATGGTTGATCTCAATCATGT 535 |||||||||||||| || |||||||||||||||||||| |||||||||||||||||||| Sbjct 484 GGAAAAGGAGGAAGTTAAAGCAAAGGCTCATTTTGAAAATATGGTTGATCTCAATCATGT 543 Query 536 GAGTAATTCATTGCCGTTTAATAATCTGATGGCTATGTATTTGCGGATAGGTCAATCC-G 594 ||||||||| |||||||||||||| ||||||||||||||| || || |||||||| || | Sbjct 544 GAGTAATTCTTTGCCGTTTAATAACCTGATGGCTATGTATATGGGGCTAGGTCAA-CCAG 602 Query 595 AGAAGGTACCTGCATTGGTTGTTGCGATGAAACAGAAGAATATCACCCCTTGTGATATCA 654 ||||||| |||||||||||||||||||||||| |||||| ||| || ||||||||||| | Sbjct 603 AGAAGGTGCCTGCATTGGTTGTTGCGATGAAAGAGAAGAGTATTACTCCTTGTGATATTA 662 Query 655 CTTACTCTATGTGGATACAAAGCTGTGGAAGTTTAAAGGACTTAGATGGAGTAGAGAAGG 714 ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 663 CTTACTCCATGTGGATACAAAGCTGTGGAAGTTTAAAGGATTTAGATGGAGTAGAGAAGG 722 Query 715 TTCTTGATGAAATGAAAGCAGAAGGTGAAGGTATTTCCTCCTGGGATACTTTTGCTAATC 774 |||||||||||||||||||||||||||||||||||| ||| ||| |||| |||||||||| Sbjct 723 TTCTTGATGAAATGAAAGCAGAAGGTGAAGGTATTTTCTCTTGGAATACATTTGCTAATC 782 Query 775 TGGCAGCAATTTATATTAAAGTCGGCCTCTATGATAAAGCAGAAGAGGCGCTGAAATCTC 834 | ||||||||||||||||||||||| ||||| | |||||||||||||||| ||||||||| Sbjct 783 TTGCAGCAATTTATATTAAAGTCGGTCTCTACGGTAAAGCAGAAGAGGCGTTGAAATCTC 842 Query 835 TGGAGAACAAGATGAATCCTCACATCCGTGATTGTTATCATTTTCTCATTAGCTTGTATG 894 |||||||||| ||||||||| || | ||||||||||||||||||||||||| ||||||| Sbjct 843 TGGAGAACAATATGAATCCTGACGTACGTGATTGTTATCATTTTCTCATTAACTTGTATA 902 Query 895 CTGGAATTGCAAATGCTTCTGAGGTTTATCGAGTTTGGGATTTGCTGAAGAAACGACACC 954 |||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||| Sbjct 903 CTGGAATTGCAAATGCTTCTGAGGTTTATCGAGTTTGGGATTTGCTTAAGAAAAGATACC 962 Query 955 CTAATGTCAACAATTCTAGCTATCTTACAATGCTCCAAGCACTGAGTAAACTTAATGACA 1014 |||||||||||||||| ||||||||||||||||| | ||||||||||||||| |||||| Sbjct 963 CTAATGTCAACAATTCAAGCTATCTTACAATGCTTCGAGCACTGAGTAAACTCGATGACA 1022 Query 1015 TTGATGGAGTCAAGAAAATCTTTACAGAATGGGAATCAACATGCTGGACTTACGATATGC 1074 ||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||| Sbjct 1023 TTGATGGAGTCAAGAAAGTCTTTGCAGAATGGGAATCGACATGCTGGACTTACGATATGC 1082 Query 1075 GGATGGCTAATGTAGCGATTAGCAGCTACTTAAAGCAGAACATGTACGAAGAAGCTGAGG 1134 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1083 GGATGGCGAATGTAGCGATTAGCAGCTACTTAAAGCAGAACATGTACGAAGAAGCTGAGG 1142 Query 1135 CTGTTTTCAATGGCGCCATGACAAAGTGTAAAGGTCAATTCTCAAAGGCTAGGCAGCTTT 1194 |||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||| Sbjct 1143 CTGTTTTCAACGGCGCCATGAAAAAGTGTAAAGGTCAATTCTCAAAGGCAAGGCAGCTTT 1202 Query 1195 TGATGATGCACCTGCTGAAGAACGATCAGGCAGATTTGGCTCTGAAGCATTTTGAAGCGG 1254 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1203 TGATGATGCACCTGTTGAAGAACGATCAGGCAGATTTGGCTCTGAAGCATTTTGAAGCGG 1262 Query 1255 CAGTTTTGGATCTAGACAAGAACTGGACTTGGAGCTCAGAGCTGATCAGTTCCTTCTTTC 1314 | |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1263 CGGTTTTGGATCAAGACAAGAACTGGACTTGGAGCTCAGAGCTGATCAGTTCGTTCTTTC 1322 Query 1315 TTCACTTTGAGGAAGCCAAAGACGTTGATGGAGCAGAAGAATTCTGCAAAACCTTGCCGA 1374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1323 TTCACTTTGAGGAAGCCAAAGACGTTGATGGAGCAGAAGAATTCTGCAAAACCTTGACGA 1382 Query 1375 AATGGAGTCCCCTCGGATCTGAAACTTACACTCTTCTTATGAAGACTTATCTCTCTGCAG 1434 |||||||||||||| | |||||||||||||||||||||||||||||||| ||| |||||| Sbjct 1383 AATGGAGTCCCCTCAGTTCTGAAACTTACACTCTTCTTATGAAGACTTACCTCGCTGCAG 1442 Query 1435 AGAAAGCTTGTCCGGATATGAAAAAGAGGTTGGAGGAACAAGGGATCCAAGTAGACGAAG 1494 ||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||| Sbjct 1443 GGAAAGCTTGTCCGGATATGAAAAAGAGATTGGAAGAACAAGGGATCCTGGTAGACGAAG 1502 Query 1495 AGCAAGAATGTTTGCTTAGTAAGATTTGCGCTTGATTCATCCTACAGCTTGACTCTGTCT 1554 ||||||||||||||||||| ||||||||| |||||||||||||| ||||| | || Sbjct 1503 AGCAAGAATGTTTGCTTAGCAAGATTTGCCCTTGATTCATCCTAAAGCTT-A----GTA- 1556 Query 1555 AGCGACATAGTTAATGTTCTGTAAAACTATGCATTTGAAGCATTTTGTTCAGACTCATTT 1614 | || | ||| ||||||||||||||||| |||||||||||||||||||| ||||||| | Sbjct 1557 AT-GATA-AGTGAATGTTCTGTAAAACTAAGCATTTGAAGCATTTTGTTCGGACTCATGT 1614 Query 1615 TCTCGTTATAGTTTGCCTT 1633 ||||||||||||||||||| Sbjct 1615 TCTCGTTATAGTTTGCCTT 1633 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80672275815 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5