BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490379
Length=1633
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01990.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2318 0.0
> AT4G01990.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:871145-872913 REVERSE LENGTH=1660
Length=1660
Score = 2318 bits (1255), Expect = 0.0
Identities = 1514/1639 (92%), Gaps = 17/1639 (1%)
Strand=Plus/Plus
Query 1 AAAATTCAAAATCCGTAAATCTGATAATGTACTCCGTTTCACGTCTCGCGAGGAGGTTCT 60
||||||||||||||||||||||||| ||| | ||||||||||| ||||||||||||||||
Sbjct 6 AAAATTCAAAATCCGTAAATCTGATGATGCATTCCGTTTCACGGCTCGCGAGGAGGTTCT 65
Query 61 GTGCGACGCTCGCTGCTTCTCCGGCGGCGATTAGCGGCGAGGCTGCTGCTTCTGTTCCGA 120
|||| ||||||||| || || |||||| ||||||||||||||||||||||||||||||||
Sbjct 66 GTGCAACGCTCGCTACTGCTACGGCGGAGATTAGCGGCGAGGCTGCTGCTTCTGTTCCGA 125
Query 121 CGAAGGCGAAAAAGAATCCATCGGTATACAAGAAACTCTCAAGTCTTGGCACGA--GG-G 177
|||||||||||||| ||| || ||||||||||||||||||| |||||||||| || |
Sbjct 126 CGAAGGCGAAAAAGCATCGGTCAATATACAAGAAACTCTCAAGCCTTGGCACGAGGGGAG 185
Query 178 GTGGGAAAATGGAGGAAACGCTAAATCAATTCGTCATGGAAGGTGTACCTGTTAAAAAAC 237
| |||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||
Sbjct 186 GAGGGAAAATGGAGGAAACGCTAAATCAGTTCGTCATGGAAGGCGTACCTGTCAAAAAAC 245
Query 238 ACGAGCTTATTCGCTACGCAAAGGATCTTCGCAAGTTTCGTCAACCACAACGCGCCCTCG 297
|||| || |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 246 ACGACCTCATTCGCTACGCAAAGGATCTTCGCAAGTTTCGTCAACCTCAACGCGCTCTCG 305
Query 298 AGATCTTTGAGTGGATGGAAAGAAAAGAAATCGTC-TTTACTGGCAGCGATCACGCAATT 356
||||||||||||||||||||||||| ||||| | | |||||||||||||||||||| |||
Sbjct 306 AGATCTTTGAGTGGATGGAAAGAAAGGAAATAG-CGTTTACTGGCAGCGATCACGCGATT 364
Query 357 CGTTTGGATCTTATTGCGAAGACTAAAGGCTTAGAGGCGGCGGAAACCTACTTTAACAGT 416
|||||| |||| ||||| |||| |||||||||||||||||| || |||||||| ||||||
Sbjct 365 CGTTTGAATCTAATTGCAAAGAGTAAAGGCTTAGAGGCGGCTGAGACCTACTTCAACAGT 424
Query 417 TTAAACGATTCTATTAAGAATCAGTCGACTTATGGTTCGC-TATTGAACTGCTACTGCGT 475
||| |||||||||||||||||||||| ||||||||||| | |||||||||| ||||| ||
Sbjct 425 TTAGACGATTCTATTAAGAATCAGTCCACTTATGGTTC-CTTATTGAACTGTTACTGTGT 483
Query 476 GGAAAAGGAGGAAGAGAAGGCAAAGGCTCATTTTGAAAACATGGTTGATCTCAATCATGT 535
|||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 484 GGAAAAGGAGGAAGTTAAAGCAAAGGCTCATTTTGAAAATATGGTTGATCTCAATCATGT 543
Query 536 GAGTAATTCATTGCCGTTTAATAATCTGATGGCTATGTATTTGCGGATAGGTCAATCC-G 594
||||||||| |||||||||||||| ||||||||||||||| || || |||||||| || |
Sbjct 544 GAGTAATTCTTTGCCGTTTAATAACCTGATGGCTATGTATATGGGGCTAGGTCAA-CCAG 602
Query 595 AGAAGGTACCTGCATTGGTTGTTGCGATGAAACAGAAGAATATCACCCCTTGTGATATCA 654
||||||| |||||||||||||||||||||||| |||||| ||| || ||||||||||| |
Sbjct 603 AGAAGGTGCCTGCATTGGTTGTTGCGATGAAAGAGAAGAGTATTACTCCTTGTGATATTA 662
Query 655 CTTACTCTATGTGGATACAAAGCTGTGGAAGTTTAAAGGACTTAGATGGAGTAGAGAAGG 714
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 663 CTTACTCCATGTGGATACAAAGCTGTGGAAGTTTAAAGGATTTAGATGGAGTAGAGAAGG 722
Query 715 TTCTTGATGAAATGAAAGCAGAAGGTGAAGGTATTTCCTCCTGGGATACTTTTGCTAATC 774
|||||||||||||||||||||||||||||||||||| ||| ||| |||| ||||||||||
Sbjct 723 TTCTTGATGAAATGAAAGCAGAAGGTGAAGGTATTTTCTCTTGGAATACATTTGCTAATC 782
Query 775 TGGCAGCAATTTATATTAAAGTCGGCCTCTATGATAAAGCAGAAGAGGCGCTGAAATCTC 834
| ||||||||||||||||||||||| ||||| | |||||||||||||||| |||||||||
Sbjct 783 TTGCAGCAATTTATATTAAAGTCGGTCTCTACGGTAAAGCAGAAGAGGCGTTGAAATCTC 842
Query 835 TGGAGAACAAGATGAATCCTCACATCCGTGATTGTTATCATTTTCTCATTAGCTTGTATG 894
|||||||||| ||||||||| || | ||||||||||||||||||||||||| |||||||
Sbjct 843 TGGAGAACAATATGAATCCTGACGTACGTGATTGTTATCATTTTCTCATTAACTTGTATA 902
Query 895 CTGGAATTGCAAATGCTTCTGAGGTTTATCGAGTTTGGGATTTGCTGAAGAAACGACACC 954
|||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||
Sbjct 903 CTGGAATTGCAAATGCTTCTGAGGTTTATCGAGTTTGGGATTTGCTTAAGAAAAGATACC 962
Query 955 CTAATGTCAACAATTCTAGCTATCTTACAATGCTCCAAGCACTGAGTAAACTTAATGACA 1014
|||||||||||||||| ||||||||||||||||| | ||||||||||||||| ||||||
Sbjct 963 CTAATGTCAACAATTCAAGCTATCTTACAATGCTTCGAGCACTGAGTAAACTCGATGACA 1022
Query 1015 TTGATGGAGTCAAGAAAATCTTTACAGAATGGGAATCAACATGCTGGACTTACGATATGC 1074
||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1023 TTGATGGAGTCAAGAAAGTCTTTGCAGAATGGGAATCGACATGCTGGACTTACGATATGC 1082
Query 1075 GGATGGCTAATGTAGCGATTAGCAGCTACTTAAAGCAGAACATGTACGAAGAAGCTGAGG 1134
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GGATGGCGAATGTAGCGATTAGCAGCTACTTAAAGCAGAACATGTACGAAGAAGCTGAGG 1142
Query 1135 CTGTTTTCAATGGCGCCATGACAAAGTGTAAAGGTCAATTCTCAAAGGCTAGGCAGCTTT 1194
|||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1143 CTGTTTTCAACGGCGCCATGAAAAAGTGTAAAGGTCAATTCTCAAAGGCAAGGCAGCTTT 1202
Query 1195 TGATGATGCACCTGCTGAAGAACGATCAGGCAGATTTGGCTCTGAAGCATTTTGAAGCGG 1254
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 TGATGATGCACCTGTTGAAGAACGATCAGGCAGATTTGGCTCTGAAGCATTTTGAAGCGG 1262
Query 1255 CAGTTTTGGATCTAGACAAGAACTGGACTTGGAGCTCAGAGCTGATCAGTTCCTTCTTTC 1314
| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1263 CGGTTTTGGATCAAGACAAGAACTGGACTTGGAGCTCAGAGCTGATCAGTTCGTTCTTTC 1322
Query 1315 TTCACTTTGAGGAAGCCAAAGACGTTGATGGAGCAGAAGAATTCTGCAAAACCTTGCCGA 1374
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1323 TTCACTTTGAGGAAGCCAAAGACGTTGATGGAGCAGAAGAATTCTGCAAAACCTTGACGA 1382
Query 1375 AATGGAGTCCCCTCGGATCTGAAACTTACACTCTTCTTATGAAGACTTATCTCTCTGCAG 1434
|||||||||||||| | |||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1383 AATGGAGTCCCCTCAGTTCTGAAACTTACACTCTTCTTATGAAGACTTACCTCGCTGCAG 1442
Query 1435 AGAAAGCTTGTCCGGATATGAAAAAGAGGTTGGAGGAACAAGGGATCCAAGTAGACGAAG 1494
||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct 1443 GGAAAGCTTGTCCGGATATGAAAAAGAGATTGGAAGAACAAGGGATCCTGGTAGACGAAG 1502
Query 1495 AGCAAGAATGTTTGCTTAGTAAGATTTGCGCTTGATTCATCCTACAGCTTGACTCTGTCT 1554
||||||||||||||||||| ||||||||| |||||||||||||| ||||| | ||
Sbjct 1503 AGCAAGAATGTTTGCTTAGCAAGATTTGCCCTTGATTCATCCTAAAGCTT-A----GTA- 1556
Query 1555 AGCGACATAGTTAATGTTCTGTAAAACTATGCATTTGAAGCATTTTGTTCAGACTCATTT 1614
| || | ||| ||||||||||||||||| |||||||||||||||||||| ||||||| |
Sbjct 1557 AT-GATA-AGTGAATGTTCTGTAAAACTAAGCATTTGAAGCATTTTGTTCGGACTCATGT 1614
Query 1615 TCTCGTTATAGTTTGCCTT 1633
|||||||||||||||||||
Sbjct 1615 TCTCGTTATAGTTTGCCTT 1633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80672275815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5