BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490380
Length=2796
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01970.1 | Symbols: AtSTS, STS | stachyose synthase | chr4:8... 4207 0.0
> AT4G01970.1 | Symbols: AtSTS, STS | stachyose synthase | chr4:853922-857008
REVERSE LENGTH=2837
Length=2837
Score = 4207 bits (2278), Expect = 0.0
Identities = 2633/2801 (94%), Gaps = 37/2801 (1%)
Strand=Plus/Plus
Query 1 ACCATTCTCTGTTTTCATTTCCTCTGTTTAGCAAGCTTCCTCTGTTCTCTCATGGCTCCA 60
||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 5 ACCATCCTCTGTTTTCATTTCCTCTGTTTTTCAAACTTCCTCTGTTCTCTCATGGCTCCA 64
Query 61 CTTAACGATTCTCTGTCATCAATCATCGATGTCATCGAATCCAAACCTCTTTGTGTTCCA 120
||| |||| |||||||||||||||| |||||| ||||||||||||||||||| |||||||
Sbjct 65 CTTCACGAATCTCTGTCATCAATCAACGATGTAATCGAATCCAAACCTCTTTTTGTTCCA 124
Query 121 CA-AACTAAGCCAATATTGCAACCAAACTCTTTTAACCTATCCCAAGGGACTCTTC-GTG 178
| |||||||||||| ||||| |||||||| |||||||||||| ||||| ||| || |||
Sbjct 125 -ATAACTAAGCCAATCTTGCAGCCAAACTCATTTAACCTATCCGAAGGGTCTC-TCTGTG 182
Query 179 CCAAAGACTCTTCTCCAATCCTCTTTGATGTTCCTCAAAACGTAACTTTCACACCATTTT 238
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 183 CCAAAGACTCTACTCCAATCCTCTTTGATGTTCCTCAAAACGTAACTTTCACACCATTCT 242
Query 239 CATCTCACTCCATATCCACTGATGCTCCTCTGCCAATCCTCCTCCGAGTTCAAGCCAACG 298
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 243 CATCTCACTCCATATCCACTGATGCTCCTCTCCCAATCCTCCTCCGAGTTCAAGCCAACG 302
Query 299 CTCACAGAGGAGGGTTTCTTGGATTCACCAAAGAATCACCCTCAGATCTTGC-CACGAAC 357
|||||| |||||||||||| ||||||||||||||||||||||| |||| | | ||| |||
Sbjct 303 CTCACAAAGGAGGGTTTCTCGGATTCACCAAAGAATCACCCTCTGATCGT-CTCACAAAC 361
Query 358 TCTTTGGGAAGATTCGAAGACAGAGA-TTTCCTCAGTCTTTTCCGGTTCAAAATGTGGTG 416
|| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 362 TCCTTGGGAAGATTCGAAGACAGAGAGTTT-CTCAGTCTTTTCCGGTTCAAAATGTGGTG 420
Query 417 GTCGACGGCTTGGATCGGAAAATCCGGGTCGGATCTTCAAGCCGAGACACAATGGGTGAT 476
|||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||
Sbjct 421 GTCGACGGCTTGGATCGGGAAATCAGGGTCGGATCTTCAAGCCGAGACTCAGTGGGTGAT 480
Query 477 GCTAAAGATTCCTGAGATCGATTCCTACGTGGCCATCATACCAACCATAGAAGGATCTTT 536
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 481 GCTAAAGATTCCTGAGATCGATTCCTACGTGGCCATCATACCAACCATTGAAGGAGCTTT 540
Query 537 TAGGGCTTCACTTAAC-CCTGGCGAAAAAGGTAACGTCTTGATTTCTGCAGAGAGTGGCT 595
||||||||||||| || ||||| || |||||||| |||||||||| ||||||||||||||
Sbjct 541 TAGGGCTTCACTT-ACTCCTGGTGAGAAAGGTAATGTCTTGATTTGTGCAGAGAGTGGCT 599
Query 596 CTACTAAAGTAAAAGAGTCGTCTTTCAATTCCATTGCCTACATTCACATTTGTGACAATC 655
| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 600 CAACTAAAGTAAAAGAGTCATCTTTCAAATCCATTGCCTACATTCACATTTGTGACAACC 659
Query 656 CTTATAACCTCATGAGAGAGGCTTTTAGTGCACTTCGTGTTCATATGAACACTTTCAAGC 715
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CCTATAACCTCATGAAAGAGGCTTTTAGTGCACTTCGTGTTCATATGAACACTTTCAAGC 719
Query 716 TTCTAGAAGAGAAGAAGCTTCCGAAAATCGTCGATAAGTTTGGATGGTGCACTTGGGATG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTCTAGAAGAGAAGAAGCTTCCGAAAATCGTCGATAAGTTTGGATGGTGCACTTGGGATG 779
Query 776 CTTGCTACTTGACCGTTGATCCTGCAACCATTTGGACCGGAGTTAAGGAGTTTGAAGATG 835
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 780 CTTGCTACTTGACCGTTGATCCTGCAACCATTTGGACTGGAGTTAAGGAGTTTGAAGATG 839
Query 836 GTGGTGTATGTCCGAAGTTTATCATCATTGATGATGGATGGCAAAGTATAAACTTTGATG 895
|||| || |||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 840 GTGGGGTGTGTCCGAAGTTTGTCATCATTGATGATGGATGGCAAAGTATTAACTTTGATG 899
Query 896 GTGATGAGCTGGACAAAGACGCTGAGAATCTTGTTCTTGGTGGAGAGCAAATGACTGCGA 955
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 900 GTGATGAGCTAGACAAAGACGCTGAGAATCTTGTTCTTGGTGGGGAGCAAATGACTGCGA 959
Query 956 GGCTTACCAGCTTCAAGGAGTGTAAGAAGTTTAGAAACTATAAAGGTGGATCCTTTTTAT 1015
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 960 GGCTTACCAGCTTCAAGGAGTGTAAGAAGTTTAGAAACTATAAAGGTGGATCCTTTATAA 1019
Query 1016 CATCTGATGCGTCTCACTTTGATCCTCACAAGCCGAAGATGATTATCTACAAAGCAACCG 1075
|||||||||| |||||||| |||||| ||||||||||||| ||||||||||||| ||||
Sbjct 1020 CATCTGATGCATCTCACTTCAATCCTCTCAAGCCGAAGATGCTTATCTACAAAGCGACCG 1079
Query 1076 AGCGAATTCAGGCGATTATATTGAGACGGAAGTTGGTTAAGGAATCTGGGGATCAAGATC 1135
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1080 AGCGAATTCAGGCGATTATATTGAGACGGAAGTTGGTTAAGGAGTCTGGGGAACAAGATC 1139
Query 1136 T-ACACGAACTTGATGAAAAGATCAAGATTTTGAGCGAAGAACTCAACGCAATGTTTGAT 1194
| || |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1140 TGAC-CGAACTTGATGAAAAGATCAAGATTTTGAGTGAAGAACTCAATGCAATGTTTGAT 1198
Query 1195 G---TTGAGAAAGAAGAGTCTTCGGGTTCTGAGGATGTTTCAGGCTCAGGTATGGCGGCT 1251
| |||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||
Sbjct 1199 GAGGTTGAGAAAGAAGAGTCTTTGGGTTCTGATGATGTTTCTGGCTCAGGTATGGCGGCT 1258
Query 1252 TTCACTAGGGATTTGAGGTTGAGGTTTAAG-GCTTTAGATGATATATATGTGTGGCATGC 1310
||||| | |||||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct 1259 TTCACAAAGGATTTGAGGTTAAGGTTTAAGAG-TTTAGATGATATATATGTGTGGCATGC 1317
Query 1311 TCTTTGTGGTGCTTGGAATGGTGTTAGGCCTGAAACCATGACGGATTTGGAAG-CCAAGG 1369
||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||
Sbjct 1318 TCTTTGTGGTGCTTGGAATGGTGTTAGGCCTGAAACCATGATGGATTTG-AAGGCCAAGG 1376
Query 1370 TTGTTCCTTTTGATCTTTCACCTGGTCTAGATGCTACGATGACTGATCTCGCAGTCGACA 1429
||| ||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||
Sbjct 1377 TTGCTCCTTTTGAGCTTTCACCTAGTCTAGGCGCTACGATGGCTGATCTCGCAGTCGACA 1436
Query 1430 AGATTGTAGAAGCTGGGATTGGTCTAGTTCATCCTTCTAAAGCTCATGAATTCTACGATT 1489
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1437 AGGTTGTAGAAGCTGGGATTGGTCTTGTTCATCCTTCTAAAGCTCATGAATTCTACGACT 1496
Query 1490 CGATGCATTCTTATCTTGCTAGTGTTGGTGTTACAGGAGCCAAGATTGATGTTTTCCAAA 1549
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 CGATGCACTCTTATCTTGCTAGTGTTGGTGTTACAGGAGCCAAGATTGATGTTTTCCAAA 1556
Query 1550 CCTTAGAGTCAGTAGCAGAAGAACATGGAGGACGAGTGGAGCTTGCTAAAGGTTACTACG 1609
|||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1557 CCTTGGAGTCACTAGCAGAAGAACATGGAGGACGAGTGGAGCTTGCTAAAGCTTACTACG 1616
Query 1610 ATGGTCTGACCGAATCCATGATCAAGAATTTCAATGGAACTGAAGTCATTGCAAGTATGC 1669
||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 1617 ATGGTCTGACCGAATCCATGATCAAGAATTTTAATGGAACTGATGTCATTGCGAGTATGC 1676
Query 1670 AGCAGTGCAATGAGTTCTTCTTCCTTGCCACAAAGCAAATCTCTATTGGCAGAGTTGGTG 1729
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 AACAGTGCAATGAGTTCTTCTTCCTTGCCACAAAGCAAATCTCTATTGGCAGAGTTGGTG 1736
Query 1730 ATGATTTTTGGTGGCAAGACCCATATGGTGACCCACAAGGAGTGTATTGGCTACAAGGAG 1789
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1737 ATGATTTTTGGTGGCAAGACCCATATGGTGACCCACAAGGAGTATATTGGCTACAAGGAG 1796
Query 1790 TTCACATGATTCACTGTTCTTACAACAGTTTTTGGATGGGTCAAATGATTCAACCCGATT 1849
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1797 TTCACATGATTCACTGTTCTTACAACAGTATTTGGATGGGTCAAATGATTCAACCAGATT 1856
Query 1850 GGGACATGTTCCAATCAGACCATGTCTGTGCCGAGTACCACGCTGCATCTCGAGCCATCT 1909
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1857 GGGACATGTTCCAATCAGACCATGTCTGTGCCGAGTACCACGCCGCATCTCGAGCCATTT 1916
Query 1910 GCGGTGGGCCTGTCTATCTCAGTGACCATCTTGGCAAAGCCTCACATAACTTTGATCTCA 1969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 GCGGTGGGCCTGTCTATCTCAGTGACCATCTTGGCAAAGCCTCACATAACTTTGATCTCA 1976
Query 1970 TCAAGAAACTTGCATTCTTTGATGGTACCATCCCAAGGTGTGTCCACTATGCTCTTCCTA 2029
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1977 TCAAGAAACTTGCTTTCTTTGATGGTACCATCCCAAGGTGTGTCCACTATGCTCTTCCCA 2036
Query 2030 CTAGAGATTCGCTCTTCAAGAACCCTTTGTTTGACAAAGAATCAATCCTCAAGATCTTCA 2089
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2037 CTAGAGATTCGCTCTTCAAGAACCCTTTGTTTGACAAAGAGTCAATCCTCAAGATCTTCA 2096
Query 2090 ACTTCAACAAGTTTGGAGGAGTAATTGGAGCATTTAACTGTCAAGGTGCTGGGTGGAGCC 2149
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 2097 ACTTCAACAAGTTTGGAGGAGTGATTGGAACATTTAACTGTCAAGGTGCTGGGTGGAGCC 2156
Query 2150 CAAAGGAGCATAGGTTCAAAGGATACAAAGAATGTTACACGACAGTTTCGGGAACAGTTC 2209
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2157 CAGAGGAGCATAGGTTCAAAGGATACAAAGAATGTTACACGACAGTTTCGGGAACAGTTC 2216
Query 2210 ATGTCTCGGACGTCGAATGGGATCAGAACCCAGAAGCTGAAAGTTCTCAGGTGAGCC-AC 2268
||||||||||| | |||||||||||||| |||||||||| | | |||||||||| || ||
Sbjct 2217 ATGTCTCGGACATTGAATGGGATCAGAATCCAGAAGCTGCAGGCTCTCAGGTGA-CCTAC 2275
Query 2269 ACCGGAGATTACTTGGTTTACAAGCAACAATCCGAAGAAATTCTTTTCATGAACTCAAAA 2328
|| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 2276 ACTGGAGATTACTTGGTTTACAAGCAACAATCTGAAGAAATCCTTTTCATGAACTCGAAA 2335
Query 2329 TCAGACGCGATCAAGATAACTCTAGAGCCATCCGCATTTGACCTATTCAGTTTCGTGCTA 2388
||||| ||||| |||||||| || ||||||||||| |||||||| || |||||||||| |
Sbjct 2336 TCAGAAGCGATGAAGATAACCCTTGAGCCATCCGCGTTTGACCTGTTGAGTTTCGTGCCA 2395
Query 2389 GTCACGGAACTGGGAAGTTCAGGGGTTAGATTTGCACCTCTAGGGTTGATCAACATGTTC 2448
||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2396 GTCACGGAACTTGTAAGTTCAGGGGTTAGATTCGCACCTCTAGGGTTGATCAACATGTTC 2455
Query 2449 AACTGCGTCGGAACTGTTCAAGAGATGGAGCTTACTGGTGATAACAGCATAAGAGTTGAC 2508
|||||||||||||| || ||||| ||| || ||||||||||||||||||||||||| |||
Sbjct 2456 AACTGCGTCGGAACAGTCCAAGACATGAAGGTTACTGGTGATAACAGCATAAGAGTGGAC 2515
Query 2509 TTGAAAGGCGAAGGAAGATTCATGGCGTATTCGAGTTTAGCTCCGGTGATGTGTTACTTG 2568
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 2516 GTGAAAGGCGAAGGAAGATTCATGGCGTATTCGAGTTCAGCTCCGGTGAAGTGTTACTTG 2575
Query 2569 AACAACAAGGAAGCTGAGTTTAAGTGGGAAGAAGAAACTGGGAAACTCAGTTTCTTTGTT 2628
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2576 AACGACAAGGAAGCTGAGTTTAAGTGGGAAGAAGAAACTGGTAAACTCAGTTTCTTTGTT 2635
Query 2629 CCTTGGGTTGAAGAATCTGGAGGCATCTCTCATCTGTCtttcaccttttaatgatttgtt 2688
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 2636 CCTTGGGTTGAAGAATCTGGTGGCATCTCTCATCTGTCTTTCACCTTTTAATAATTTGTT 2695
Query 2689 ttgatttt-gtttttcgttttccttttc----a----g--a--ag---ttgggttgtcaa 2732
| |||||| ||||||||||||||||||| | | | || ||||||||||||
Sbjct 2696 TGGATTTTTGTTTTTCGTTTTCCTTTTCTTGCATTTTGTTATCAGAAGTTGGGTTGTCAA 2755
Query 2733 tttctgttcggtcttttacttttcAATTTGGAGACTTATCA 2773
|||||||| ||| |||||||||||||||||||||||| |||
Sbjct 2756 TTTCTGTTTGGTGTTTTACTTTTCAATTTGGAGACTTCTCA 2796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 138912265167
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5