BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490381
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01960.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1821 0.0
> AT4G01960.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G02380.1);
Has 67 Blast hits to 67 proteins in 11 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:851210-853165
REVERSE LENGTH=1191
Length=1191
Score = 1821 bits (986), Expect = 0.0
Identities = 1125/1189 (95%), Gaps = 21/1189 (2%)
Strand=Plus/Plus
Query 1 AATCGGGACACGAACaaaaaagaaaaaagaaaatcaaaaGTTTTGACCTTTATGAACCCT 60
||||||||||||||||||| |||||| | |||||||||| ||||||||||||||||||||
Sbjct 1 AATCGGGACACGAACAAAAGAGAAAAGA-AAAATCAAAATTTTTGACCTTTATGAACCCT 59
Query 61 AATTTTGGGTTGGTCA------CTCTCTCTCTTTCCTTTCCCAAAATTGGATTCAAAGTT 114
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 60 AATTTTGGGTTGGTCACTCTCTCTCTCTCTCTTTCCTTTCCCAAAATTGGATTCAAAGTT 119
Query 115 CTTCCTTTTTGCCTTCCTCGTACCTCACAGCATCAAGGGTTTTCGACATTCCCAGCTATT 174
||| ||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 120 CTTTCTTTTTGTCTTCCTCGTACATCACAGCATCAAGGGTTTTCGACATTACCAGCTATT 179
Query 175 ATGCTTGAATTTGAGGACGCAAGGAGTTAAATAGAGCAAGTCTTTTGAGCTGTGGAAGTT 234
||||||||||| ||||||||||||||||||| ||||||||||||||||| || ||||| |
Sbjct 180 ATGCTTGAATTCGAGGACGCAAGGAGTTAAA-AGAGCAAGTCTTTTGAGTTGAGGAAGCT 238
Query 235 TCTATAGAGG---ATTATTTCAGGGGAAATTTAAGGGTTTGATCAGCTTCTGCAT-TTGT 290
||| |||||| |||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 239 TCTGTAGAGGATTATTATTTCAGGGGAAATTTAAGGGTTTGATCAGCTTTTGTGTGTTGT 298
Query 291 GCGGGATGGATCAAATTGTTTCAGGAGAAGAAGAAGATCTTGATGTAGATATTGAAGATG 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GCGGGATGGATCAAATTGTTTCAGGAGAAGAAGAAGATCTTGATGTAGATATTGAAGATG 358
Query 351 GTAGATTCAATGAGACACAAGACATAACGGCGAATCTTGTTTCAGCAGAAGGGGATTCAG 410
|||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||
Sbjct 359 GTAGATTCAATGAGACACAAGAGATAACGACGAATCTTGTTTCAGCGGAAGGGGATTCAG 418
Query 411 AGAATGGTTTGAATCATGTTTGGAGTGGACGTTTGAGTTTTGATGGGTCTGAAAAGAGTG 470
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AGAATGTTTTGAATCATGTTTGGAGTGGACGTTTGAGTTTTGATGGGTCTGAAAAGAGTG 478
Query 471 CTGATGATCT-G--G------TAATGGGAGACGAAAAGCGGAGAGAAAGGAGCAGCCAAA 521
|||||||||| | | |||||||||| | ||||||||||||||| ||||| ||||
Sbjct 479 CTGATGATCTAGTAGACCCTTTAATGGGAGAGGGAAAGCGGAGAGAAAGAAGCAGTCAAA 538
Query 522 GTTTGGATCTTTCGGATATGAAGTTTGATAATGTTAAGTTTAAGAAGACAAGAAAGCCTT 581
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||
Sbjct 539 GTTTGGATCTTTCGGATATGAAGTTTGATAATGATAAGTTTAAGAAGACGAGAAAACCTT 598
Query 582 CAAAGCCGCCGAGGCCTCCAAAAGGTCCATTACTGAGTGCAAATGACCAGAAGTTGATGA 641
||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 599 CAAAGCCACCGAGGCCTCCAAAAGGTCCGTTACTGAGTGCTAATGACCAGAAGTTGATGA 658
Query 642 GGGAAATCACGGAGCTTGCTATGAGAAAGCGTGCTCGGATTGAACGGATGAAAACACTGA 701
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 659 GGGAAATCACGGAGCTTGCTATGAGAAAGCGTGCTCGGATTGAACGGATGAAAACACTCA 718
Query 702 GAAGATTGAAAGCAGCAAAGTCCTCGTCTCCCTGCAGTAGTATTTTCGCCATGATAGTGA 761
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 719 GAAGATTGAAAGCAGCAAAGTCCTCGTCTCCCTGCAGTAGCATTTTCGCCATGATAGTGA 778
Query 762 CGGTTATATTCTTCGTCTTCTTAATCTTTCAAGGGTTCTTCACAAGCAATGCAAGTTTGA 821
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 779 CGGTTATATTCTTCGTCTTCTTAATCTTTCAAGGGTTCTTCACAAGCAATGCGAGTTTGA 838
Query 822 ATTCAGACAATTCACCTGCACCAAATAATTCAGCCAATAACCGTATGGTCTCTGTTCAAT 881
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 839 ATTCTGACAATTCACCTGCACCAAATAATTCAGCTAATAACCGTATGGTCTCTGTTCAGT 898
Query 882 TCTACAGTGAGTTTGCTCCTCGTGAGAGAATCGATCCCAGCCCAACTACTTCTTTCAGGT 941
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 899 TCTACAATGAGTTTGCTCCTCGTGAGAGAATCGATCCCAGCCCTACTACTTCTTTCAGGT 958
Query 942 ATAAGAGAGTCTCAGGTGCAGACAATGAAGAAAACACAAGAGAAGTTACCAGATGAGTTT 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ATAAGAGAGTCTCAGGTGCAGACAATGAAGAAAACACAAGAGAAGTTACCAGATGAGTTT 1018
Query 1002 CTTCTCTTCGGATTCTTGTAAAATATAACCAAAAACACTACTTATGTTTTTGTTTGTTCG 1061
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1019 CTTCTCTTTGGATTCTTGTAAAATGTAACCAAAAACACTACTTATGTTTTTGTTTGTTCG 1078
Query 1062 TAAATTCTTGACATCACTCTATTGTTCCTTTGCTCTGTTTGTGTTCACATGTTTCTCTCT 1121
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1079 TAAATTCTTGACATCACTCTATTGTTCCTTTGATCTGTTTGTGTTCACATGTTTGTCTCT 1138
Query 1122 GTGTTACTCTTCTTGTATATATTCTTATGGATGAATCTGCTCATTTTTT 1170
|||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1139 CTGTTACTCTTCTTGTAAATATTCTTATGGATGAATCTGCTCATTTTTT 1187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57429423480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5