BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490384
Length=812
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01900.1 | Symbols: PII, GLB1 | GLNB1 homolog | chr4:821685-... 1120 0.0
> AT4G01900.1 | Symbols: PII, GLB1 | GLNB1 homolog | chr4:821685-823523
FORWARD LENGTH=871
Length=871
Score = 1120 bits (606), Expect = 0.0
Identities = 734/793 (93%), Gaps = 20/793 (3%)
Strand=Plus/Plus
Query 27 AATCATGGCGGCGTCAATGACGAAACCCATCTCAATAACTTCTCTAGGTTTCTATTCTGA 86
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 48 AATCATGGCGGCGTCAATGACGAAACCCATCTCAATAACTTCTCTCGGTTTCTATTCTGA 107
Query 87 TCGAAAGAACATTGCTTTCTCTGATTGCATTTCGATTTGTTCTGGATTCAGACATTCTAG 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 108 TCGAAAGAACATTGCTTTCTCTGATTGCATTTCGATTTGTTCTGGATTCAGACATTCCCG 167
Query 147 ACCATCATGCCTCGATTTGGTCACGAAA-TCACCGAGTCACAACACTCGTGTTTTACCTG 205
|||||| ||||||||||||||||| ||| ||||||||| | |||| ||||||||||||||
Sbjct 168 ACCATCTTGCCTCGATTTGGTCAC-AAAGTCACCGAGTAATAACAGTCGTGTTTTACCTG 226
Query 206 TCGTTAGAGCCCAAAGCTCTTCTGATTATATTCCAGACTCAAAATTTTACAAGGTGGAAG 265
||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 227 TCGTTAGTGCCCAAATATCTTCTGATTATATTCCAGACTCGAAATTTTACAAGGTGGAAG 286
Query 266 CAATTGTCAGGCCATGGAGTCTCCAGAAAGTTTCATCGGCGTTGTTGAAAATCGGGATTC 325
|||||||||| |||||||| ||||| ||||||||||||| || |||||||||||||||
Sbjct 287 CAATTGTCAGACCATGGAGAATCCAGCAAGTTTCATCGGCTTTACTGAAAATCGGGATTC 346
Query 326 GAGGTGTTACTGTTTCTGATGTTCGAGGGTTTGGTGCACAAGGTGGTTCCACCGAGAGAC 385
|||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||
Sbjct 347 GAGGTGTTACTGTTTCTGATGTGAGAGGGTTTGGTGCACAAGGAGGTTCTACCGAGAGAC 406
Query 386 ATGGTGGCTCTGAGTTCTCGGAAGACAAGTTTATTGCTAAAGTTAAAATGGAAATCGTTG 445
| |||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||
Sbjct 407 ACGGTGGCTCTGAGTTCTCGGAAGACAAATTTGTTGCTAAAGTTAAGATGGAAATCGTTG 466
Query 446 TTAAGAAAGACCAAGTGGAATCTGTAATCAACACCATAATTGATGGAGCAAGGACAGGAG 505
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 467 TTAAGAAAGACCAAGTGGAATCTGTAATCAACACAATAATTGAAGGAGCAAGGACAGGAG 526
Query 506 AGATTGGTGATGGCAAGATTTTCGTTATACCTGTGTCAGATGTCATAAGAGTTCGGACAG 565
|||||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||||
Sbjct 527 AGATTGGTGATGGCAAGATTTTTGTTTTGCCTGTGTCAGATGTCATAAGAGTTAGGACAG 586
Query 566 GTGAGCGTGGGGAGAAAGCAGAGAAGATGACTGGTGATATACTTTCACCGTCTTAGGAAC 625
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 587 GTGAGCGTGGGGAGAAAGCAGAGAAGATGACTGGTGATATGCTTTCACCGTCTTAGGAAC 646
Query 626 AAACAGAGCTCAAGAACGGTGTTTAT------CATTTCGGTCTCTAGATCTAATTTCTGC 679
|||||||||||||||| ||| ||| | ||||||||||||||||| | ||||
Sbjct 647 AAACAGAGCTCAAGAATGGTTTTTTTTTTTTTCATTTCGGTCTCTAGAT-T-----CTGC 700
Query 680 GAACAATAATGAATGGAGTCTGTGTTTGGTTTCTCTGTTGAATCGATCAAGATGTGTTTT 739
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 701 GAATAATAATGAATGGAGTCTGTGTTTGGTTTCA-TGTTGAATCGATCAAGATGTGTTTT 759
Query 740 TAACTGTAAATGAATTATGTTATGCAGAAACATCTGTCCTGGTTCTCAGACATCGAAACT 799
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 760 TAACTGTACATGAATTATG-----CAGAAACATCTGTCCTGGTTCTCAGACATCGAAACT 814
Query 800 CTGTTCCTAATAA 812
|||||||||||||
Sbjct 815 CTGTTCCTAATAA 827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39534273689
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5