BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490386

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G01895.1 | Symbols:  | systemic acquired resistance (SAR) re...   595    9e-170
  AT4G01897.1 | Symbols:  | unknown protein; CONTAINS InterPro DO...  69.4    3e-11 


> AT4G01895.1 | Symbols:  | systemic acquired resistance (SAR) 
regulator protein NIMIN-1-related | chr4:819957-820379 FORWARD 
LENGTH=423
Length=423

 Score =  595 bits (322),  Expect = 9e-170
 Identities = 393/427 (92%), Gaps = 5/427 (1%)
 Strand=Plus/Plus

Query  1    ATGAACCaagaagaagaaaatacagagaagaagaggatcaacgagatcgatgaagacgaa  60
            |||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct  1    ATGAACCAAGAAGAAGAAAAAACAGAGAACAAAAGGATCAACGAGATCGATGAAGACGAA  60

Query  61   gaagaagagttggagaacaagaaAATGGAGATGTTCTTCAATCTCATCAAAAACTATCAG  120
            ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| |||
Sbjct  61   GAAGAAGAGTTGGAGAACAAGAAGATGGACATGTTCTTCAATCTCATTAAAAACTACCAG  120

Query  121  GATGCTAAGAAACGAAGACGACAAGACTTAACTCAAGATTCCGGCGACACTGCTTCCG-T  179
            |||||||||||||||||||||||| |||||||||||||||| ||||||  ||||| || |
Sbjct  121  GATGCTAAGAAACGAAGACGACAATACTTAACTCAAGATTCTGGCGACGTTGCTT-CGAT  179

Query  180  TCCAAACAAGAGATCCGACTACGGCATTGTTCCTGTATTCCGTGCTGAAGATTTTTCTCA  239
             || | |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  180  GCCGACCAAGAGATCCGACTACAGCATTGTTCCTGTATTCCGTGCTGAAGATTTTTCTCA  239

Query  240  CTGTATGGACTTAAACTTAAAGCCGTCGAATTCGATTATCCCCACcaagaaccaacaaga  299
            |||||||||||||||| ||||||| ||||||||||||||| |||||||||||||| ||||
Sbjct  240  CTGTATGGACTTAAACCTAAAGCCATCGAATTCGATTATCTCCACCAAGAACCAAGAAGA  299

Query  300  agagaagcaagaagaagaagaagaagaagatgatgatgatgaaggggaagaagatgatga  359
            |||||||||||||||||||||||||||||||||||| || ||||   |||| ||||||||
Sbjct  300  AGAGAAGCAAGAAGAAGAAGAAGAAGAAGATGATGAAGAAGAAG---AAGATGATGATGA  356

Query  360  tgaagaagaagaagtagagaagGTCACAATAAAAGATAATGGTTTAGATCTTAATCTTGC  419
             | |||||||||||| |||||||| |  | ||||||||||||||||||||||||||||||
Sbjct  357  AGGAGAAGAAGAAGTTGAGAAGGTGATGAGAAAAGATAATGGTTTAGATCTTAATCTTGC  416

Query  420  ATTGTAA  426
            |||||||
Sbjct  417  ATTGTAA  423


> AT4G01897.1 | Symbols:  | unknown protein; CONTAINS InterPro 
DOMAIN/s: Protein of unknown function DUF952 (InterPro:IPR009297); 
Has 763 Blast hits to 763 proteins in 180 species: Archae 
- 0; Bacteria - 351; Metazoa - 0; Fungi - 0; Plants - 29; 
Viruses - 0; Other Eukaryotes - 383 (source: NCBI BLink). 
| chr4:820336-821505 REVERSE LENGTH=559
Length=559

 Score = 69.4 bits (37),  Expect = 3e-11
 Identities = 37/37 (100%), Gaps = 0/37 (0%)
 Strand=Plus/Minus

Query  390  AAAAGATAATGGTTTAGATCTTAATCTTGCATTGTAA  426
            |||||||||||||||||||||||||||||||||||||
Sbjct  552  AAAAGATAATGGTTTAGATCTTAATCTTGCATTGTAA  516



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20207635098


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5