BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490389
Length=1456
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01880.1 | Symbols: | methyltransferases | chr4:810699-8129... 2135 0.0
> AT4G01880.1 | Symbols: | methyltransferases | chr4:810699-812925
REVERSE LENGTH=1516
Length=1516
Score = 2135 bits (1156), Expect = 0.0
Identities = 1341/1429 (94%), Gaps = 18/1429 (1%)
Strand=Plus/Plus
Query 13 GAGC-AAACTCTGGCTGAGAGAATGGAGGCGAAAAGTAGCAATCGATGCAGTTTCTGGCT 71
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 GAGCAAAACTCTGGCTGAGAGAATGGAGGCGAAAAGTAGCAATCGATGCAGTTTCTGGCT 81
Query 72 TCCGAAGAAGAAAAGATCATGCGCGAATACTCGAATCAAGAGTTCCATGTTTTGTGGAAA 131
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 82 TCCGAAGAAGAAAAGATCATGCGCGAATACTCGAATCGAGAGTTCTATGTTTTGTGGAAA 141
Query 132 CCATAGCCAGAGATTGGAAGGTCAATGGATTCCATGCCCTATTGATCCTTCTCACTCTGT 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 CCATAGCCAGAGATTGGAAGGTCAATGGATTCCATGCCCTATTGATCCTTCTCACTCTGT 201
Query 192 GTTGCAGGAGAATCTCGAATGGCATGTAAAGAGATGTCCTTTACTTAAACAAACTGTAGC 251
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 GTTGCAGGAGAATCTCGAATGGCATGTAAAGAGATGTCCTTTACTTAAACAAACTGTAGA 261
Query 252 ATTGTCTGGTCAACGATTTTATCAGAAGGGCATTAATGCCGGAAACgaagaagaagaaga 311
|||||||||||||||||||||||||||||| |||||||| || ||| || ||||||||
Sbjct 262 ATTGTCTGGTCAACGATTTTATCAGAAGGGTATTAATGCTGGGAAC---GACGAAGAAGA 318
Query 312 agaaAAGTTGGGATCTTGTTATTCGGATTCTCTTGTTACTTCAGAGATGAAGAGAAAGCT 371
||||||| ||||||| || | |||||||||||||||||||||||||||||| ||
Sbjct 319 AGAAAAGATGGGATC------TT--G-TTCTCTTGTTACTTCAGAGATGAAGAGAAATCT 369
Query 372 TCTCTATAGTATGAGCGTTTCTCAGTTTCATCAGCTAATTAAGAAAACTGAGGCTGTTCA 431
|||||||||||||| |||||| ||||||||||||| |||||||||| ||||| ||||||
Sbjct 370 GCTCTATAGTATGAGTGTTTCTAAGTTTCATCAGCTTATTAAGAAAATTGAGGATGTTCA 429
Query 432 TGGCGGTATATGTAAAGAGATCGAAGATTCGTATCTGTCACCTGAAGCTTGTAACATATG 491
||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 430 TGGCGGTATTTGTAAAGATATCGAAGATTCGTATTTGTCACCTGAAGCTTGTAACATATG 489
Query 492 GTTTAATAAAGAGATAGATAGGAAATTACCGTTTCAAGAAAAACATGTTTTGCAGCAAGG 551
||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 490 GTTTAATAAGGAGATAGATAGGAAATTACCATTTCAAGAGAAACATGTTTTGCAGCAAGG 549
Query 552 TTCGATTCTTGGTAACTTGGAAGAGATTGGTGCATTGAAGAGGTGCAACATAAATGTGGA 611
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 550 TTCAATTCTTGGTAACTTGGAAGAGATTGGTGTATTGAAGAGGTGCAACATAAATGTGGA 609
Query 612 ATGTTGTGAAAGTGATCTGAAAGAGAAAGACGATAACAGTGTGTCGGCGGTTGTTGAATT 671
|||||| ||||| |||||| |||||||||||||||| | || | | ||||||||||||||
Sbjct 610 ATGTTGCGAAAGCGATCTGGAAGAGAAAGACGATAATACTGCGCCAGCGGTTGTTGAATT 669
Query 672 TGGCGCTGGGAGAGGATACTTAACACAGATGCTAGCAGATTGCTATGGGATaaaaaaaGT 731
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 670 TGGCGCTGGGAGAGGATACTTAACACAGATGCTAGCAGATTGCTATGGGATCAAAAAAGT 729
Query 732 GTATCTTGTTGAGAGGAAATCTTATAAGCTTAAGGCTGATCGGTCGTTGAGGCAAAAGGA 791
|||||| ||||||||||||||||| ||||||||||||||| |||| ||||||||||||||
Sbjct 730 GTATCTAGTTGAGAGGAAATCTTACAAGCTTAAGGCTGATAGGTCATTGAGGCAAAAGGA 789
Query 792 GAACTTAGTATTAGAGCGTATGAGAATCGATATTGAGGATTTGAACCTTAACGTGGTTGA 851
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 790 GAGCTTAGTATTAGAGCGTATGAGAATCGATATTGAGGATTTGAACCTTAACGCGGTTGA 849
Query 852 ATCTTTGCACGGTGTTCCTTATGTGGCTATTGGGAAACATCTCTGTGGTCCTGCAACAGA 911
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 850 ATCTTTGCACGGTGTTCCTTATGTGGCCGTAGGGAAACATCTCTGTGGTCCTGCAACAGA 909
Query 912 TTTGAGCCTAAGATGTTGTTTATCCAGACAAGATGGTGAAAGCCCGGTACTTAGAGGTCT 971
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 910 TTTGAGCTTAAGATGTTGTTTATCCAGACAAGATGGTGAAAGCCCAGTACTTAGAGGTCT 969
Query 972 CGCTATTGCGACTTGTTGCCATCATCTTTGCCAATGGAAAAGCTACATAAATAAAGAATA 1031
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 970 CGCTATTGCGACTTGTTGCCATCATCTTTCCCAATGGAAAAGCTACATAAATAAAGAATA 1029
Query 1032 TATC-TTGAGCCTAGGGATTTCCAAAGACGAGTTCCATATCATGACTTCGTTCACTAGCT 1090
|||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1030 TATCCTT-AGCCTGGGGATTTCCAAGGACGAGTTCCATATCATGACTTCGTTCACTAGCT 1088
Query 1091 GGGCTGTAGATGATGATCACGGTTCCAATCTTCCCGGTGTTGACGACATTGACCTTCTCG 1150
|||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 1089 GGGCAGTAGATGATGATCACGGTTCCAAGCTTCCCGGTGTTGATGACATTGACCTTCTTG 1148
Query 1151 CTTCAAATGCAAAAGAGGAAGAAGAAGGAGAAGTGAGAGATGATTCGTTGAGCAGCGTGG 1210
|||||||||||| ||||| |||||||||||||| ||||||| ||| |||| ||||||||
Sbjct 1149 ATTCAAATGCAAAGGAGGAGGAAGAAGGAGAAGTAAGAGATGCTTCTTTGATCAGCGTGG 1208
Query 1211 AGGAAGTTGTGAAGAAAATGAAACCCATGGAGAGAGCTGTTTTAGGGTTTAAATGCAAAC 1270
||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 1209 AGGAAGTTGTGAAGAAAATGAAACCCATGGAAAGAGCTGTTTTAGGATTCAAATGCAAAC 1268
Query 1271 AGATAATAGATGCAGGGAGAATGAAGTGGGTTAATAAGAAACATGGGTTAGATTCAAAGC 1330
|||| || ||||||||||| |||||||||||||| ||||||||| ||| |||||||||
Sbjct 1269 AGATCATCGATGCAGGGAGGATGAAGTGGGTTAA---GAAACATGGATTAAATTCAAAGC 1325
Query 1331 TAGTGAAGTATATCCCTGCAAGCATCTCGCCGGAAAATACTTTACTGATCGCCGGAAAAC 1390
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 TAGTGAAGTATATCCCGGCAAGCATCTCGCCGGAAAATACTTTACTGATCGCCGGAAAAC 1385
Query 1391 CCAATCCTTCTGTTGCTTGATGTTGTATACTTGTTGGTTACTCAATACT 1439
||||||||||| |||||||||||||||| ||||||||||| | ||||||
Sbjct 1386 CCAATCCTTCTATTGCTTGATGTTGTATTCTTGTTGGTTATTTAATACT 1434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71786779350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5