BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490395
Length=1408
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01840.1 | Symbols: KCO5, ATTPK5, ATKCO5, TPK5 | Ca2+ activa... 1844 0.0
> AT4G01840.1 | Symbols: KCO5, ATTPK5, ATKCO5, TPK5 | Ca2+ activated
outward rectifying K+ channel 5 | chr4:793261-795139 FORWARD
LENGTH=1575
Length=1575
Score = 1844 bits (998), Expect = 0.0
Identities = 1316/1458 (90%), Gaps = 67/1458 (5%)
Strand=Plus/Plus
Query 1 Cttttcttttggatttttccgtttgtccccataaaaaatttcatttttattaag--ttt- 57
|||||||||||| ||||||||||| ||||| |||||||||||||| || |||
Sbjct 59 CTTTTCTTTTGGCGTTTTCCGTTTG-----GTAAAAGATTTCATTTTTATT-AGCTTTTC 112
Query 58 ----tt-AGAGATTCCTCATTTGTTGGTAAATGGAGAATCACCAACCTCTCATCAGCCCT 112
|| |||||||||| |||||||||||||| | | | ||| | |||||||||||
Sbjct 113 AAGATTCAGAGATTCCTAATTTGTTGGTAAAT-G-G-A--ACC-A---CTCATCAGCCCA 163
Query 113 CAATCACGTTTCCGCCTCCAACCAATACCGGAAAAT--C-CAGACTCCTCCTCCTCCGCC 169
||| ||||||||||||||||||| |||||||||||| | | ||||||||||||||||
Sbjct 164 CAACCACGTTTCCGCCTCCAACCCATACCGGAAAATCCCTCCTCCTCCTCCTCCTCCGCC 223
Query 170 GCCATAACAATCCCTCGCTCAATCTCAAACACTTCCTTCTTCCACGAAATCTCCCAAGAA 229
|||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 224 TCCATCACAATCCCTCGCTCTATCTCAAACACTTCCTTCTTCCATGAAATCTCCCAAGAA 283
Query 230 CGTCTTCT-C--CATCATCAAGACCTCGAAGAATCCGTACAAGACGAC--A-ACGACGAA 283
|||||||| | |||||||||||||||||| ||||||||||||||||| | | ||| ||
Sbjct 284 CGTCTTCTCCTTCATCATCAAGACCTCGAACAATCCGTACAAGACGACAAAGAAGACCAA 343
Query 284 GACTCAGACTCAGACGAAACAAATCGGTTTTTGTCAAACACTAGACCACTTCACCGATCT 343
|||||||||||||||||||||||||| ||||| || | || ||||||||||||||||||
Sbjct 344 GACTCAGACTCAGACGAAACAAATCGCTTTTTATCTCAGACAAGACCACTTCACCGATCT 403
Query 344 CGTACAGCTCCAGCTATGGTaatcatcaaagacttaagacccaaaaatcaagaaaccaaa 403
||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 404 CGTACAGCTCCAGCTATGGTAATCATCAAAGACTTAAGAACCAAACCTCCAGAAACCAAA 463
Query 404 aaaccatcaccaatctcaaaatccataatcaaacaaGCTATTTTCTTGCTAGTCATCTAC 463
|||||||||||| |||| ||||||||||||| |||||| |||||||||||| || |||||
Sbjct 464 AAACCATCACCAGTCTCTAAATCCATAATCAGACAAGCGATTTTCTTGCTAATCGTCTAC 523
Query 464 TTAACCTTAGGGGTTTCAATCTATTCATTCAATCGTGACCACTACTCAGGAATCGAAACC 523
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 524 TTAACCTTAGGCGTTTCAATCTACTCATTCAATCGTGACCACTACTCAGGAATCGAAACC 583
Query 524 CATCCTGTAGTCGACGCTCTCTATTTCTGTATCGTCACTATGTGTACTATTGGTTACGGT 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 CATCCTGTAGTCGACGCTCTCTATTTCTGTATCGTCACTATGTGTACTATTGGTTACGGT 643
Query 584 GACATCGCTCCGTTGACTCCATGGACCAAGATCTTCGCCGTTGTTTTCGTTTTATTCGGG 643
|||||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||
Sbjct 644 GACATCGCTCCGTTGACTCCATGGACAAAGATCTTCGCTGTTGTTTTCGTCTTGTTCGGA 703
Query 644 TTCGGGTTCTTGGATATCTTACTAAGTGGTGTCGTTAATTACGTCTTGGATCTTCAAGAG 703
||||||||||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||
Sbjct 704 TTCGGGTTCTTGGATATTTTACTCAGTGGTGTTGTTAACTACGTTTTGGATCTTCAAGAG 763
Query 704 AGTATGATTCTCACCGGAATCCAAACGAAGCAGCACCATCACCACCA-C--CATC---GA 757
|||||||||||||||||||||||||||| |||||| ||||| ||||| | |||| ||
Sbjct 764 AGTATGATTCTCACCGGAATCCAAACGAGGCAGCATCATCAACACCATCATCATCATAGA 823
Query 758 TTCTCTGCTAAAGATTACATAATTGATTTTGAGAAAGGGAGGATGAGGATAAGGATGAAA 817
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 824 TTCTCTGCTAAAGATTATATTATTGATTTTGAGAAAGGGAGGATGAGGATAAGGATGAAA 883
Query 818 GTTGGTTTAGCGTTATGCGTCGTCgttttgtgtattggtgttggtgctttggttttgcat 877
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 884 GTTTGTTTAGCGTTATGCGTCGTCGTTTTGTGTATCGGTGTTGGTGCTTTGGTTTTGCAT 943
Query 878 tttgttgaagaattgggttttgttgATTCGGTTTATTTGTCGGTTATGTCTGTGACTACC 937
|| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 944 TTCGTTGAGGAATTGGGTTTTGTTGATTCGGTTTATTTGTCGGTTATGTCGGTGACTACT 1003
Query 938 GTTGGTTATGGTGATCGAGCTTTTAAAACGCTTCAAGGGAGGCTTTTTGCGGCGGTTTGG 997
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 GTTGGTTATGGTGATCGTGCTTTTAAAACGCTTCAAGGGAGGCTTTTTGCGGCGGTTTGG 1063
Query 998 CTTCTTGTTTCCACTCTTGCGGTGGCGCGTGCGTTTTTGTATTTGGCGGAAGCGAGGATT 1057
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1064 CTACTTGTTTCGACTCTTGCGGTGGCGCGTGCGTTTTTGTATTTGGCGGAAGCGAGAATT 1123
Query 1058 GATCGCCGGCATCGGAAAGCTGTTAAATTGGCGTTGAATAGAGAAATCACTGTTGAGGAT 1117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1124 GATCGCCGGCATCGGAAAGCTGTTAAATTGGCGTTGAATAGAGAAATCACTGTTGATGAT 1183
Query 1118 TTGCTCAAAGCTGATACTTATCATCATGGTTTCATCAGTAAATCAGAGTATATAGTGTTC 1177
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1184 TTGCTCAAAGCTGATACTTATCAACATGGTTTCATCAGTAAATCAGAGTATATAGTGTTG 1243
Query 1178 AAGCTTAAGGAAATGGGGAAGATCACTGAGAAAGACATTAACCAAGTTGGGATGCAGTTC 1237
||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| ||||||
Sbjct 1244 AAGCTTAAGGAAATGGGGAAGATCACTCAGAAAGACATTGACCAAGTTGTGATTCAGTTC 1303
Query 1238 GAGAAACTTGATCCTAAT-AATTTAGGAAAAATCACATTACCTGATCTTTTGGGTGG-TC 1295
|||||||||||||||||| || | |||||||||||||||||||||||||||||| || ||
Sbjct 1304 GAGAAACTTGATCCTAATCAAAT-AGGAAAAATCACATTACCTGATCTTTTGGG-GGATC 1361
Query 1296 CTTTGTGACAAAAGAACATTCTC---CTCTG-TCTCT--G-----ctt-tt-t--a---- 1336
|||||||||| |||||||||||| ||||| | | | | ||| || | |
Sbjct 1362 CTTTGTGACAGAAGAACATTCTCTGTCTCTGCTTTTTTAGGTTTTCTTCTTATTCAATTA 1421
Query 1337 -ctt-tctttttttc-tt--ttttCAA-GAAAAATAACTGAATATATGTAGCAGCAGTGA 1390
||| ||||||||| || |||| || ||||||||||||||||||||||||| ||||||
Sbjct 1422 TCTTCTCTTTTTTTAATTCCTTTTTAAAGAAAAATAACTGAATATATGTAGCAACAGTGA 1481
Query 1391 TTCATACAAAGAATTATC 1408
||||||||||||||||||
Sbjct 1482 TTCATACAAAGAATTATC 1499
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69377153190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5