BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490398
Length=3041
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01810.1 | Symbols: | Sec23/Sec24 protein transport family ... 4691 0.0
> AT4G01810.1 | Symbols: | Sec23/Sec24 protein transport family
protein | chr4:776488-780355 REVERSE LENGTH=3121
Length=3121
Score = 4691 bits (2540), Expect = 0.0
Identities = 2851/2995 (95%), Gaps = 46/2995 (2%)
Strand=Plus/Plus
Query 1 GAAAATAGAATCGAGAGGAG-AGTACTGGGTGAGAGAGATCGTAAGCTACGATTCAATGC 59
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 13 GAAAATAGAATCGAGAGGAGTAGTACTGGGTGAGAGGGATCGTAAGCTACGATTCAATGC 72
Query 60 GAGTCAAAAATTCGTCT--G-CTTCGtcttcttcttcttcttcCTAATTTCTCGAATCAT 116
||||||||||||||||| | || | ||||||||||||||||||||||||||||||| |
Sbjct 73 GAGTCAAAAATTCGTCTACGAATTTG-CTTCTTCTTCTTCTTCCTAATTTCTCGAATCGT 131
Query 117 TTCTCTGATTAAGGTATCGCAATTCTTGATCTGGAAACAGTTCAAGACT-ATTCAGCTTG 175
|||| |||| | | | |||||||||||||| |||||||||| || |||||||||
Sbjct 132 CTCTCCGATT-A---A--G--ATTCTTGATCTGGACACAGTTCAAGGCTGTTTCAGCTTG 183
Query 176 CGAGTTGTGATCTTA----------ATT---T-G----TT-GGGATCCGATGGCTGACTT 216
|| ||||||||||| ||| | | || || ||||||||||| ||||
Sbjct 184 TGAATTGTGATCTTACTTTGTTTGGATTAAGTAGAAACTTCGGAATCCGATGGCTAACTT 243
Query 217 ACCGCAGAGAACGTCGGTTAATTACCCGGGCACTCTCACTCCTATAGAGCCAAATAGACC 276
|||| | | | ||||||||||||||||||| |||||||||||| ||||||||||||| ||
Sbjct 244 ACCG-A-A-ATCGTCGGTTAATTACCCGGGAACTCTCACTCCTCTAGAGCCAAATAGGCC 300
Query 277 ATCGCCACAGCCAGATAGAACCCCAGTCCCTCATTCTCCTCCAGTAGTAGCTTCACCTAT 336
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 301 ATCACCACAGCCAGATAGAACCCCGGTCCCTCATTCTCCTCCAGTAGTAGCTTCACCTAT 360
Query 337 ACCTCCTAGGTTTCCTCAACCAAGTTTTAGACCAGATCAGATGTCTTCACCGTCGATGAA 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACCTCCTAGGTTTCCTCAACCAAGTTTTAGACCAGATCAGATGTCTTCACCGTCGATGAA 420
Query 397 ATCCCCGAA-TCTGTTGTCACCTGCTAATGGTATCAGAACCGGAAGTCCTATTCCTCGTT 455
|||||| || | ||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 421 ATCCCC-AAGTTTGTTGTCACCTGCGAATGGTATCAGAACCGGAAGTCCCATTCCTCGCT 479
Query 456 TGAGTACTCCGCCTGGTCCTCCAGTCTTTAATACTCCGGTTAAACCAGCTGCTGTGCCTT 515
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 480 TGAGTACTCCGCCTGGTCCTCCTGTCTTTAATACTCCGGTTAAACCAGCTGCTGTGCCTT 539
Query 516 TCCGTACCTCTCCAGCTACTCCTCAGCCTATGGCATACTCTTCAGCTACAGCTTCTTCTC 575
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 540 TCCGTACCTCTCCAGCTACTCCTCAGCCTATGGCATACTCTTCAGCTA-A--TTCTTCTC 596
Query 576 TGCCAGTATCTACACCTTCCTTTTACTCAAACGGATCATCAGTTGGAACGCAGCGTGATC 635
|||| ||||||||||||||||||||||||||||| ||||| |||||| | ||||||||||
Sbjct 597 TGCCCGTATCTACACCTTCCTTTTACTCAAACGGGTCATCTGTTGGATCTCAGCGTGATC 656
Query 636 TTCCAGATGTTGTTAGAATGGAGGAACCAATAGCTGCAGACTCACCTTATGTTTTGTTTT 695
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 657 TTCCAGATGTTGTTAGAATGGAAGAACCAATAGCTGCAGACTCACCTTATGTTTTGTTTT 716
Query 696 CTGCAAATAAGGTTTTAAAGCAGAAGAAGCTAGCAAATGTTCCTAGCTTGGGGTTTGGAG 755
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 717 CAGCAAATAAGGTTTTAAAGCAGAAGAAGCTAGCAAATGTTGCTAGCTTGGGGTTTGGAG 776
Query 756 CAATAGTTTCTGCAGGGAGGGAGATTAGTCCTGGTCCTCAGATTATCCAACGTGATCCAC 815
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CAATAGTTTCTGCTGGGAGGGAGATTAGTCCTGGTCCTCAGATTATCCAACGTGATCCAC 836
Query 816 ATCGCTGTCTGAACTGTGGAGCGTATTCAAATCCCTATAGCTCCATATTAATTGGCTCAG 875
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 837 ATCGCTGTTTGAACTGTGGAGCATATTCAAATCCCTATAGCTCCATATTAATTGGCTCAG 896
Query 876 GCCAATGGCAGTGTGTCATCTGCGAGAACATGAATGGAAGTAAAGGTGAATATGTGGCTT 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GCCAATGGCAGTGTGTCATCTGCGAGAACATGAATGGAAGTAAAGGTGAATATGTGGCTT 956
Query 936 CGAGCAAGAATGAGTTGCAAAACTTTCCAGAGCTTTCATTGCCTCTGGTTGATTATGTTC 995
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 957 CGAGCAAGAATGAGTTGCAAAACTTTCCAGAGCTTTCATTGCCTCTGGTTGATTATGTAC 1016
Query 996 AGACTGGAAACAAGAGGCCTGGGTTTGTTCCTGCCTCTGATTCTCGGACATCTGCACCTG 1055
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1017 AGACTGGAAACAAGAGACCTGGGTTTGTTCCTGCCTCTGATTCGCGGACATCTGCACCTG 1076
Query 1056 TTGTCCTTGTTATTGATGAGTGTTTAGATGAACCACACCTTCAGCACTTGCAAAGCTCTT 1115
| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1077 TCGTCCTTGTTATTGATGAGTGTTTAGATGAACCACATCTTCAGCACTTGCAGAGCTCTT 1136
Query 1116 TGCATGCATTTGTAGACTCGCTTCCTCAAACTACCAGGCTTGGGATTATACTGTATGGTC 1175
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1137 TGCATGCATTTGTAGACTCGCTTCCACAAACTACCAGGCTTGGGATTATACTGTATGGTC 1196
Query 1176 GTACAGTTTCAATATATGATTTCTCTGAAGAATCCGTTGCTTCAGCGGATGTTATTTCTG 1235
|||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1197 GTACTGTTTCAATATATGATTTCTCTGAAGATTCCGTTGCTTCTGCGGATGTTATTTCTG 1256
Query 1236 GTTCAAAATCACCATCTGCAGAGTCGATGAAATCGCTGATTTATGGGACTGGTGTATACT 1295
|| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1257 GTGCAAAATCACCATCTGCAGAGTCGATGAAAGCGCTGATTTATGGGACCGGTGTATACT 1316
Query 1296 TGTCACCAATGCATGCATCGCTAAAGGTAGCACATGAGATATTCTCGTCCTTAAGACCAT 1355
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1317 TGTCACCAATGCATGCATCACTAAAGGTAGCGCATGAGATATTCTCGTCCTTAAGACCAT 1376
Query 1356 ACACATTGAATGTACCTGAAGCATCTAGAGATAGGTGCCTTGGAACTGCCGTTGAGGCTG 1415
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1377 ACACATTGAATGTACCTGAAGCCTCTAGAGATAGGTGCCTTGGAACTGCCGTTGAGGCTG 1436
Query 1416 CTCTGGCTATAATCCAAGGACCATCAGCCGAAATGTCTCGGGGAGTGGTCAGAAGAGCTG 1475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1437 CTCTGGCTATAATCCAAGGACCATCAGCCGAAATGTCTCGGGGAGTGGTCAGAAGAGCAG 1496
Query 1476 GAGGTAACAGTAGAATCATAGTTTGCGCTGGTGGACCCATTACATATGGTCCTGGATCAG 1535
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1497 GAGGTAACAGTAGAATCATAGTTTGCGCTGGTGGTCCCATTACATATGGTCCTGGATCGG 1556
Query 1536 TACCTCATTCGATGAGTCATCCAAATTATCCATACATGGAAAAGACAGCCATAAAATGGT 1595
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1557 TACCTCATTCAATGAGTCATCCAAATTATCCATATATGGAAAAGACAGCCATAAAATGGA 1616
Query 1596 TGGAAAATTTGGGGCGAGAAGCTCACAGGCACAATACAGTCGTCGACATATTGTGCGCTG 1655
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1617 TGGAAAATTTGGGGCGTGAAGCTCACAGGCACAATACGGTCGTCGACATATTGTGCGCTG 1676
Query 1656 GAACTTGCCTTCTCAGAGTTCCTGTCCTGCAGCCACTTGCAAAAGCTTCAGGTGGTGTTT 1715
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1677 GAACTTGCCCTCTCAGAGTTCCTATCCTGCAGCCACTTGCAAAAGCTTCAGGTGGTGTTT 1736
Query 1716 TGGTTCTTCACGATGATTTTGGTGAAGCCTTTGGTGTGGACTTGCAAAGGGCAGCCACTC 1775
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1737 TGGTTCTTCACGATGATTTTGGTGAAGCCTTTGGTGTGGACTTGCAGAGGGCAGCCACTA 1796
Query 1776 GGGCAGCAGGTTCACATGGTCTGCTTGAAGTACGGTGTTCAGATGATATTCTTATAACTC 1835
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1797 GGGCAGCAGGTTCACATGGTCTGCTTGAAGTACGATGTTCAGATGATATTCTTATAACTC 1856
Query 1836 AAGTGATTGGACCTGGCGAAGAAGCACATTCAGAAACTCACGAGACGTTTAAGAGTGATG 1895
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 AGGTGATTGGACCTGGCGAAGAAGCACATTCAGAAACTCACGAGACGTTTAAGAGTGATG 1916
Query 1896 CAGCTCTCTGTATTCAGATGCTGAGTGTTGAAGAAACACAAAGCTTCTCTCTCTCGATGG 1955
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1917 CGGCTCTCTCTATTCAGATGCTGAGTGTTGAAGAAACACAAAGCTTCTCTCTCTCAATGG 1976
Query 1956 AGAATAAGAGGGACATCAAAAGCGATCATGTCTTTTTCCAGTTTGCTTTCCATTATTCGG 2015
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1977 AGAATAAGAGGGACATCAAAAGCGATCATGTATTTTTCCAGTTTGCTTTCCATTATTCGG 2036
Query 2016 ATGTTTATCAAGCAGATGTGTCTCGGGTAATTACGTTCAAATTGCCAACTGTTGATAGTA 2075
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2037 ATGTTTATCAAGCAGATGTGTCTCGGGTAATTACGTTCAAATTGCCAACTGTTGATAGCA 2096
Query 2076 TTTCAGCATATCTTCAGAGTGTTGAGGATGAAGCTTCTGCGGTCCTCATCTCCAAAAGAA 2135
| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 2097 TCTCAGCATATCTTCAGAGTGTTGAGGACGAAGCTTCTGCGGTCCTCATCTCCAAGAGAA 2156
Query 2136 CTCTTTTATTAGCGAAAAATCAGAAGGACGCAGTCGATATGCGTGCTACTGTAGACGAAA 2195
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2157 CTCTTTTATTAGCGAAAAATCAGAAGGACGCAGTCGATATGCGTGCTACAGTAGACGAAA 2216
Query 2196 GAATCAAAGACATTGCTTTGAAATTCGGATCACAAGTGCCAAAATCAAAGCTTTATAGCT 2255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2217 GAATCAAAGACATTGCTTTGAAATTCGGATCACAAGTGCCAAAATCAAAGCTTTATAGCT 2276
Query 2256 TCCCCAAGGAGCTATCATCCCTTCCAGAACTCCTCTTCCATCTTAGAAGGGGTCCTTTAT 2315
|||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2277 TCCCTAAGGAACTATCATCCCTCCCAGAACTCCTCTTCCATCTTAGAAGGGGTCCTTTAC 2336
Query 2316 TGGGAAACATCATTGGTCATGAAGATGAAAGATCGGTGCTACGGAATTTGTTTCTAAATG 2375
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 2337 TGGGAAACATCATTGGTCATGAAGATGAAAGATCGGTGCTACGAAATTTGTTTCTAAACG 2396
Query 2376 CATCTTTCGATCTGTCTCTTAGAATGGTAGCACCCCGTTGCTTGATGCACCAAGAGGGTG 2435
|||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct 2397 CATCTTTCGATCTGTCTCTTCGTATGGTAGCACCCCGTTGCTTGATGCACCAAGAAGGTG 2456
Query 2436 GTACATTCGAGGAACTACCAGCATATGATCTCTCTATGCAATCAGATAAGGCTGTTATTC 2495
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2457 GTACATTCGAGGAACTACCAGCGTATGATCTCTCTATGCAATCAGATAAGGCTGTTATTC 2516
Query 2496 TTGACCATGGCACAGATGTATTTATTTGGTTGGGAGCCGAACTGTCTGCTGATGAGGTGA 2555
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 2517 TTGACCATGGCACAGATGTATTTATTTGGTTGGGAGCCGAACTGTCAGCTGACGAGGTGA 2576
Query 2556 AGAGTGCTGCAGTCTTAGCAGCTTGCAGAACGTTAGCTGAAGAACTAACTGAATTCCGGT 2615
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2577 AGAGTGCTGCAGTCTTAGCAGCTTGCAGAACGTTAGCTGAAGAGCTAACTGAATTCCGGT 2636
Query 2616 TTCCAGCCCCCCGTATTCTCGCGTTCAAGGAGGGAAGTTCCCAGGCTAGATATTTTGTTT 2675
||||||| || ||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 2637 TTCCAGCTCCACGTATTCTCGCATTCAAGGAAGGAAGTTCCCAAGCTAGATATTTTGTTT 2696
Query 2676 GCCGGCTTATACCAGCACATAAAGACCCTCCTTATGAGCAGGAAGCAAGATTTCCACAGA 2735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2697 GCCGGCTTATACCAGCACATAAAGACCCTCCTTATGAGCAGGAAGCAAGATTTCCACAGA 2756
Query 2736 TAAGAACATTGACGACAGAGCAAAGAATAAAACTAAAGAGTAGTTTTATAGAGTTTGATG 2795
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2757 TAAGAACATTGACGACAGAGCAAAGAATGAAACTAAAGAGTAGTTTTATAGAGTTTGATG 2816
Query 2796 AAGCCAGTTTCTGCGAATGGATGAGGAGTTTGAAAGTAGTGCCTCCTGAGCCCAGGTAGT 2855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2817 AAGCCAGTTTCTGCGAATGGATGAGGAGTTTGAAAGTAGTGCCTCCTGAGCCCAGGTAGT 2876
Query 2856 CATACATTT-ATTCTCTGCTTCATAGttttttttttcatcttttactgtca-aacatttt 2913
||||||||| ||||| |||||||| ||||||||| | |||||||||||| ||||||||
Sbjct 2877 CATACATTTTATTCT-TGCTTCATCGTTTTTTTTC-CGCCTTTTACTGTCAGAACATTTT 2934
Query 2914 ttttgttctctggtgagtcttttgtttttAGGATTCTCTTTATATGATCTCAAGT 2968
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 2935 TTTTGTTCTCTG-TGAGTCTTTTGTTTTTAGGATTCTCTTTATATGATCTCCAGT 2988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 151203166202
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5