BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490399
Length=3221
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01800.2 | Symbols: AGY1, SECA1 | Albino or Glassy Yellow 1 ... 2780 0.0
> AT4G01800.2 | Symbols: AGY1, SECA1 | Albino or Glassy Yellow
1 | chr4:770838-776260 REVERSE LENGTH=3343
Length=3343
Score = 2780 bits (1505), Expect = 0.0
Identities = 1628/1689 (96%), Gaps = 1/1689 (0%)
Strand=Plus/Plus
Query 1429 GATGAGTCGGATGTAGTTTTCAAGGCAGTCAATGGTAAATGGCGGGCAGTAGTAGTGGAG 1488
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1615 GATGAGTCAGATGTGGTTTTCAAGGCAGTCAATGGCAAATGGCGGGCAGTAGTAGTGGAG 1674
Query 1489 ATCTCTAGAATGCACAAGACAGGTAGGGCTGTGCTAGTTGGTACAACCAGTGTCGAGCAG 1548
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1675 ATCTCTAGAATGCACAAGACAGGTAGGGCTGTGCTAGTTGGCACAACCAGTGTCGAGCAG 1734
Query 1549 AGTGATGAACTATCGCAACTATTGCGGGAAGCTGGAATACCTCATGAGGTCCTCAATGCC 1608
|||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||
Sbjct 1735 AGTGATGAACTATCGCAACTGTTGAGGGAAGCTGGAATAACTCATGAGGTCCTCAATGCC 1794
Query 1609 AAACCAGAAAATGTGGAGAGGGAAGCTGAAATTGTAGCACAAAGTGGCCGTTTAGGAGCA 1668
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1795 AAGCCAGAAAATGTGGAGAGGGAAGCTGAAATTGTAGCACAAAGTGGCCGTTTAGGGGCA 1854
Query 1669 GTAACAATTGCCACAAATATGGCAGGGCGTGGGACAGACATAATTCTTGGTGGAAACGCA 1728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1855 GTAACAATTGCCACAAATATGGCAGGGCGTGGGACAGACATAATTCTTGGTGGAAACGCA 1914
Query 1729 GAGTTTATGGCACGTTTGAAGCTCCGTGAGATACTTATGCCCAGAGTGGTAAAGCCTACT 1788
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1915 GAGTTCATGGCACGTTTGAAGCTTCGTGAGATACTTATGCCCAGAGTGGTAAAGCCTACT 1974
Query 1789 GATGGTGTTTTCGTATCTGTGAAGAAGGCCCCTCCCAAGAGAACATGGAAGGTGAACGAG 1848
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1975 GATGGTGTTTTTGTATCTGTGAAGAAGGCCCCTCCCAAGAGAACATGGAAGGTGAATGAG 2034
Query 1849 AAGTTATTTCCATGCAAATTGTCAAATGAGAAAGTAAAGCTAGCTGAAGAAGCTGTACAA 1908
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 2035 AAGTTATTTCCATGCAAACTGTCAAATGAGAAAGCAAAGCTAGCTGAAGAAGCTGTACAA 2094
Query 1909 TCAGCTGTAGAGGCTTGGGGCCAGAAAGCTTTAACTGAGCTTGAAGCAGAGGAACGTCTA 1968
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||
Sbjct 2095 TCAGCTGTAGAGGCTTGGGGCCAGAAATCGTTAACTGAGCTTGAAGCAGAGGAACGTTTA 2154
Query 1969 TCTTATTCTTGTGAAAAGGGTCCTGTCCAAGATGAAGTTATAGCTAAACTGAGGACCGGA 2028
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
Sbjct 2155 TCTTATTCTTGTGAAAAGGGTCCTGTCCAAGATGAAGTTATAGGTAAACTGAGGACTGCA 2214
Query 2029 TTTCTGGCGATAGCGAAAGAATATAAGGGCTACACTGATGAAGAAAGGAAGAAGGTTGTG 2088
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2215 TTTCTGGCGATAGCGAAAGAATATAAGGGCTACACTGATGAAGAAAGGAAGAAGGTGGTG 2274
Query 2089 GAAGCTGGTGGACTTCACGTTGTGGGGACAGAGCGGCATGAATCACGCCGAATAGACAAT 2148
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 2275 GAAGCTGGTGGACTTCACGTGGTGGGGACAGAGCGGCATGAATCACGTCGAATAGACAAT 2334
Query 2149 CAGTTGCGTGGGCGAAGTGGTCGGCAGGGGGATCCTGGAAGTTCCCGGTTCTTCCTTAGT 2208
|||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 2335 CAGTTGCGTGGGCGAAGTGGCCGGCAAGGGGATCCTGGAAGTTCCCGATTCTTCCTTAGT 2394
Query 2209 CTTGAAGATAACATATTCCGCATTTTTGGTGGAGATCGGATTCAGGGTATGATGAGAGCA 2268
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2395 CTTGAAGATAACATATTCCGCATTTTTGGTGGAGATCGGATTCAGGGTATGATGAGGGCA 2454
Query 2269 TTCAGGGTGGAAGACTTACCGATCGAATCCAAGATGCTTACTAAAGCTCTAGATGAAGCT 2328
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2455 TTCAGGGTGGAAGATTTACCGATCGAATCCAAGATGCTTACTAAAGCTCTAGATGAAGCT 2514
Query 2329 CAGAGAAAAGTTGAGAATTACTTCTTTGACATCAGAAAGCAACTATTCGAATTTGACGAG 2388
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2515 CAGAGAAAAGTTGAGAATTACTTCTTTGACATCAGAAAGCAATTATTCGAATTTGACGAG 2574
Query 2389 GTTCTCAATAGCCAAAGAGATCGTGTTTACACAGAGAGAAGGCGTGCTCTTGTGTCAGAC 2448
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 2575 GTTCTCAATAGCCAAAGAGATCGTGTTTATACAGAGAGAAGGCGTGCTCTTGTGTCGGAC 2634
Query 2449 AGCCTCGAGCCTCTGATTATCGAGTATGCTGAATTGACAATGGATGACATTCTAGAGGCA 2508
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2635 AGCCTTGAGCCTCTGATTATCGAGTATGCTGAATTGACAATGGATGACATTCTAGAGGCA 2694
Query 2509 AATATTGGCCCAGAAACTCCAAAAGAAAGCTGGGATTTTGAAAAGCTCATTGCGAAAGTT 2568
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2695 AATATTGGCCCAGATACTCCAAAGGAAAGCTGGGATTTTGAAAAGCTCATTGCGAAAGTT 2754
Query 2569 CAGCAGTACTGTTACCTGTTGAACGATCTCACTCCAGATTTGCTAAAAAGCCAAGGATCA 2628
||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||
Sbjct 2755 CAGCAGTACTGTTACCTGTTGAACGATCTCACTCCCGATTTGCTGAAAAGCGAAGGATCA 2814
Query 2629 AGTTACGAAGGGTTGCAAGATTATCTACGTGCCCGTGGCCGCGAGGCATACTTACAGAAA 2688
||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 2815 AGTTATGAAGGGTTGCAAGATTATCTCCGTGCCCGTGGCCGCGATGCATACTTACAGAAA 2874
Query 2689 AGAGAAATTGTGGAGAAACAATCACCAGGGCTAATGAAAGATGCTGAACGATTCTTAATC 2748
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2875 AGAGAAATCGTGGAGAAACAATCACCAGGGCTAATGAAAGATGCCGAACGATTCTTAATC 2934
Query 2749 TTGAGCAATATTGACCGGTTATGGAAAGAACACCTTCAAGCGCTCAAGTTTGTGCAACAA 2808
|||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 2935 TTGAGCAATATTGATAGGTTATGGAAAGAACACCTTCAAGCACTCAAGTTCGTGCAACAA 2994
Query 2809 GCTGTGGGGCTTAGAGGATATGCGCAACGCGATCCACTCATCGAGTATAAGCTTGAAGGA 2868
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2995 GCTGTGGGGCTCAGAGGATATGCGCAACGCGATCCACTCATCGAGTATAAGCTCGAAGGA 3054
Query 2869 TACAATCTATTTCTGGAAATGATGGCTCAAATACGAAGAAATGTTATATACTCCATATAT 2928
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3055 TACAATCTATTTCTGGAAATGATGGCTCAAATACGAAGAAATGTGATATACTCCATATAT 3114
Query 2929 CAGTTTCAACCAGTGCGGGTAAAGAAGGACGATGATAAGAAATCTCAGAACGGGAAACCG 2988
|||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 3115 CAGTTTCAACCAGTGCGGGTAAAGAAGGACGAAGAGAAGAAGTCTCAGAACGGGAAACCG 3174
Query 2989 AGCAAACAAATGGATAATGTTAGTGAGAAGCCTAAACAAGTCGGTGTCACAGATGAGCCA 3048
||||||||| | ||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 3175 AGCAAACAAGTAGATAATGCTAGTGAGAAGCCTAAACAAGTTGGTGTCACAGATGAGCCA 3234
Query 3049 TCCTCAATTGCCAGCGCCTAAGAGCAGTAAACGGTAAAATCTTTTTGGGATACTAGAGCG 3108
||||||||||| ||||||||||||| ||||||||||||||||||||||| ||| ||||||
Sbjct 3235 TCCTCAATTGCAAGCGCCTAAGAGCGGTAAACGGTAAAATCTTTTTGGG-TACAAGAGCG 3293
Query 3109 GGAATTCGT 3117
|||||||||
Sbjct 3294 GGAATTCGT 3302
Score = 1203 bits (651), Expect = 0.0
Identities = 718/751 (96%), Gaps = 2/751 (0%)
Strand=Plus/Plus
Query 1 ATGGTGTCTCCACTCTGCGACTCTCAGTTACTTAACCACCGACCCTCGATCTCACCCACA 60
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||
Sbjct 130 ATGGTGTCTCCACTCTGCGACTCTCAGTTACTTTACCACCGCCCCTCGATCTCACCTACC 189
Query 61 GCTTCCCAGTTCGTGATCGCTGATGGAATCTTCCTCCGGCAGAATCGTCTTTTGAGCTCT 120
||||| |||||||||||||| ||||||||| |||||||||| ||||||||| ||||||||
Sbjct 190 GCTTCTCAGTTCGTGATCGCGGATGGAATCATCCTCCGGCAAAATCGTCTTCTGAGCTCT 249
Query 121 TCGTCGTTTTGGGGCACCAAATTCGGAAACACCGTGAAGTTGGGAGTATCCGGATGTAGT 180
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 250 TCGTCGTTTTGGGGCACCAAATTCGGAAACACCGTCAAGTTGGGAGTATCTGGATGTAGT 309
Query 181 AGCTGCTCTCGGAGGAGGACCACGAGTGTGAATGCTTCATTAGGTGGTCTTCTCAGCGGG 240
||||||||||||| ||| | ||||||||||||||||||| ||||||||||||| |||||
Sbjct 310 AGCTGCTCTCGGAAGAGAAGCACGAGTGTGAATGCTTCACTAGGTGGTCTTCTTAGCGGA 369
Query 241 ATTTTCAAGGGTTCTGATAACGGAGAGTCGACGAGGCAACAGTACGCATCAATCGTTGCC 300
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 370 ATTTTCAAGGGTTCTGATAACGGAGAGTCGACTAGGCAACAGTACGCATCCATCGTCGCA 429
Query 301 TCCGTCAATCGCTTGGAGACTGAGATTTCGGCTCTTTCGGATTCAGAGTTGCGAGGA-AG 359
||||| |||||||||||||||||||||||||||||||||||||| ||||||||| || ||
Sbjct 430 TCCGTTAATCGCTTGGAGACTGAGATTTCGGCTCTTTCGGATTCTGAGTTGCGA-GAGAG 488
Query 360 AACTGATGCGTTGAAGCAACGGGCTCAGAAAGGAGAATCCATGGATTCACTTTTACCTGA 419
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 489 GACTGATGCGTTGAAGCAACGTGCTCAGAAAGGAGAATCCATGGATTCACTTTTACCTGA 548
Query 420 AGCATTTGCTGTTGTGAGAGAAGCTTCCAAGAGAGTTCTTGGACTAAGACCTTTTGATGT 479
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 549 AGCATTTGCTGTTGTGAGAGAAGCTTCCAAGAGAGTTCTTGGACTCAGACCTTTCGATGT 608
Query 480 GCAATTAATTGGTGGTATGGTTCTTCATAAAGGAGAAATAGCTGAAATGAGAACTGGTGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 GCAATTAATTGGTGGTATGGTTCTTCATAAAGGAGAAATAGCTGAAATGAGAACTGGTGA 668
Query 540 AGGGAAAACGCTTGTTGCTATTTTACCTGCTTATTTGAATGCATTAAGTGGGAAAGGTGT 599
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 669 AGGGAAAACGCTTGTTGCTATTTTACCAGCTTATTTGAATGCATTAAGTGGGAAAGGTGT 728
Query 600 TCATGTGGTTACAGTCAATGATTATCTTGCTCGAAGAGATTGTGAATGGGTTGGTCAAGT 659
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 TCATGTGGTTACAGTTAATGATTATCTTGCTCGAAGAGATTGTGAATGGGTTGGTCAAGT 788
Query 660 TCCTCGGTTCCTTGGATTGAAGGTTGGTCTAATCCAACAGAATATGACACCTGAACAAAG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 TCCTCGGTTCCTTGGATTGAAGGTTGGTCTAATCCAACAGAATATGACACCTGAACAAAG 848
Query 720 AAAGGAAAATTATTTATGCGACATCACTTAT 750
||||||||||||||||||||| ||||| |||
Sbjct 849 AAAGGAAAATTATTTATGCGATATCACATAT 879
Score = 1050 bits (568), Expect = 0.0
Identities = 608/628 (97%), Gaps = 0/628 (0%)
Strand=Plus/Plus
Query 802 AGTGTGGAGGAGCTCGTCTTGAGGGATTTCAATTATTGTGTAATTGATGAAGTTGATTCC 861
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 880 AGTGTTGAGGAGCTCGTCTTGAGGGATTTCAATTATTGTGTGATTGATGAAGTTGATTCC 939
Query 862 ATACTTATTGATGAAGCAAGGACTCCTCTCATTATCTCTGGGCCTGCAGAGAAACCTAGT 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 ATACTTATTGATGAAGCAAGGACTCCTCTCATTATCTCTGGGCCTGCAGAGAAACCTAGT 999
Query 922 GACCAATATTACAAAGCTGCAAAGATTGCTTCAGCCTTTGAGCGGGATATACATTACACT 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 GACCAATATTACAAAGCTGCAAAGATTGCTTCAGCCTTTGAGCGGGATATACATTACACT 1059
Query 982 GTTGATGAAAAGCAGAAGACTGTTTTACTAACAGAACAGGGTTATGAGGATGCAGAAGAA 1041
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1060 GTTGATGAAAAGCAGAAGACTGTTTTACTGACGGAACAGGGTTATGAGGATGCAGAAGAA 1119
Query 1042 ATCCTGGACGTGAAAGATTTGTATGATCCCCGTGAACAATGGGCATCATATGTTCTTAAT 1101
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1120 ATCCTGGACGTGAAAGATTTGTATGATCCCCGTGAACAGTGGGCATCATATGTTCTTAAT 1179
Query 1102 GCCATTAAGGCAAAAGAACTTTTTCTCAGAGATGTTAACTATATCATCCGGGCAAAGGAG 1161
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1180 GCCATTAAGGCAAAAGAACTTTTTCTCAGAGATGTGAACTATATCATCCGAGCAAAGGAG 1239
Query 1162 GTTCTTATCGTGGATGAGTTTACTGGCCGTGTAATGCAGGGAAGACGTTGGAGTGACGGA 1221
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1240 GTTCTTATCGTGGATGAGTTTACTGGTCGTGTAATGCAGGGAAGACGTTGGAGTGATGGA 1299
Query 1222 CTACATCAAGCAGTTGAAGCAAAAGAAGGCTTGCCTATTCAGAATGAATCCATTACTTTG 1281
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1300 CTACATCAAGCTGTTGAAGCAAAAGAAGGCTTGCCTATTCAGAATGAATCTATTACTCTG 1359
Query 1282 GCATCAATTAGTTATCAAAATTTCTTTTTGCAGTTTCCGAAACTTTGCGGGATGACTGGT 1341
|| ||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||
Sbjct 1360 GCGTCAATTAGTTATCAAAACTTCTTTCTGCAGTTTCCGAAACTTTGCGGGATGACGGGT 1419
Query 1342 ACTGCATCCACCGAGAGTGCAGAATTTGAGAGCATATACAAGCTCAAAGTTACAATTGTA 1401
|| ||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1420 ACAGCATCGACCGAGAGTGCAGAATTTGAAAGCATATACAAGCTTAAAGTTACAATTGTA 1479
Query 1402 CCCACAAATAAGCCCATGATAAGAAAGG 1429
||||||||||||||||||||||||||||
Sbjct 1480 CCCACAAATAAGCCCATGATAAGAAAGG 1507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 160233215942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5