BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490401
Length=1394
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01750.1 | Symbols: RGXT2 | rhamnogalacturonan xylosyltransf... 1930 0.0
AT4G01770.1 | Symbols: RGXT1 | rhamnogalacturonan xylosyltransf... 1659 0.0
AT4G01220.1 | Symbols: | Nucleotide-diphospho-sugar transferas... 926 0.0
AT1G56550.1 | Symbols: RXGT1 | RhamnoGalacturonan specifi... 848 0.0
> AT4G01750.1 | Symbols: RGXT2 | rhamnogalacturonan xylosyltransferase
2 | chr4:756363-758590 FORWARD LENGTH=1501
Length=1501
Score = 1930 bits (1045), Expect = 0.0
Identities = 1244/1338 (93%), Gaps = 21/1338 (2%)
Strand=Plus/Plus
Query 1 GAATCCGATCCAAGCTTGTGAAAGTTTCTCTGCAAATCTTGTTGCTCTGCTGCTACAACA 60
||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 112 GAATCCGATTCAAGCTTGTGAAAGTCTCTCTGCAAATCTTGTTGCTCTGTTGCTACAACA 171
Query 61 ATGGCGCAGAAACAACAGATTCTTCACCAACAACGACCATTCTCTTCCTCTCCTCGTTCT 120
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 172 ATGGCGCAGAAACAACAGACCCTTCACCAACAACGACCATTCTCTTCTTCTCCTCGTTCT 231
Query 121 TATTCTTCAATCTCAAACCGTCCCATCTTTCTCCTTAGCCGCAACGGtctcctccttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 232 TATTCTTCAATCTCAAACCGTCCCATCTTTCTCCTTAGCCGCAACGGTCTCCTCCTTGTC 291
Query 181 cttctcgctctcttccttctccttGGTGTATTCTTACCCTGGCCAGGATCTCCTCTGTTG 240
||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||
Sbjct 292 CTTCTCGCTCTCTTCCTTCTCCTCGGTGTATTCTTACCTTGGCCCGGATCTCCTTTGTTG 351
Query 241 CTATTACCAAACAAAGTCTCTTCTCCTTCTAATGCTACTTCTTTGTCTTCACAAGCCAAA 300
||||| || ||||||||||||||||||||| ||||| ||||||||||| | || ||||||
Sbjct 352 CTATTTCCGAACAAAGTCTCTTCTCCTTCTTATGCTTCTTCTTTGTCTCCGCATGCCAAA 411
Query 301 TCTGAATGGCGCGACTATACCCTCGCTCAGGCCGCTAAGTTCGTGGCCAAGAACGGCACT 360
||||||||||| |||||||||| |||||||| |||||||| || |||| ||||||||||
Sbjct 412 TCTGAATGGCGTAACTATACCCTTGCTCAGGCAGCTAAGTTTGTCGCCACGAACGGCACT 471
Query 361 GTGATCGTCTGCGCCGTGAGCTCACCATTCTTGCCTTTTCTTAACAACTGGTTGATTAGT 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 472 GTGATCGTCTGCGCCGTGAGCTCACCATTCTTGCCTTTTCTCAACAACTGGTTGATTAGT 531
Query 421 GTTTCTAGACAGAAGCATCAAGAAAAAGTCCTTGTGATCGCTGAGGATTACATTACTCTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GTTTCTAGACAGAAGCATCAAGAAAAAGTCCTTGTGATCGCTGAGGATTACATTACTCTG 591
Query 481 TATAAAGTCAACGAGAAGTGGCCTGGCCATGCCGTTCTTATTCCTCCTGCGCTCGATTCT 540
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 592 TATAAAGTCAACGAAAAGTGGCCTGGCCACGCCGTTCTTATTCCTCCAGCGCTCGATTCT 651
Query 541 AGAACCGCATACAGTTTCGGTTCCCAGGGTTTCTTCAATTTCACAGCTCGAAGGCCGCAA 600
| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 652 AAAACCGCATACAGTTTCGGTTCCCAGGGTTTCTTCAACTTCACAGCTCGAAGGCCACAA 711
Query 601 CATCTCTTGCAAATTTTGGAGCTAGGTTACAATGTTATGTACAACGATGTTGATATGGTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 CATCTCTTGCAAATTTTGGAGCTAGGTTACAATGTTATGTACAACGATGTTGATATGGTT 771
Query 661 TGGTTGCAAGATCCGTTTCAGTATTTGGAGGGAAGCCACGACGCGTACTTCACGGATGAT 720
|||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 772 TGGTTGCAAGATCCATTTCAGTATTTGGAGGGAAGCCATGACGCGTACTTTACGGATGAT 831
Query 721 ATGCCTCAAATTAAGCCTTTGAATCACTCTCATGATTTACCAGATCCGGATCAAAACGGA 780
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 832 ATGCCTCAAATAAAGCCTTTGAATCACTCTCATGATTTACCAGCGCCGGATCAAAACGGA 891
Query 781 GAGACTTATATATGTAGCTGCATGATTTACTTGCGTCCCACTGA-TGGTGCAAAGCTTCT 839
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 892 GAGACTTATATATGTAGCTGCATGATTTACTTGCGACCCAC-GAATGGTGCAAAGCTTCT 950
Query 840 AATGAAGAAATGGAGTGAGGAACTTCAATCCCAAGCTTGGTCTGAGTCCATCCGTTTTAA 899
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 951 AATGAAGAAATGGAGTGAGGAACTTCAGTCCCAAGCTTGGTCTGAGTCCATCCGTTTTAA 1010
Query 900 AGCAAATGACCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCTCATCAAGTGGATCT 959
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1011 AGCAAATGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCCCATCAAGTGGATCT 1070
Query 960 GTACTTGCTCTCGCAAGTAGCTTTTCCAACAGGAGGATTGTACTTCAGTAACGAGGCATG 1019
|||||||| || || |||||||||||||||||||||||||| |||| | | | ||||||
Sbjct 1071 CTACTTGCTTTCTCAGGTAGCTTTTCCAACAGGAGGATTGTATTTCAATGATGCGGCATG 1130
Query 1020 GGTTAAAGAGACAAAGGGGAAACATGTCATAATCCACAATAACTACATTATCGGTTACGA 1079
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1131 GGTTAAAGAGACAAAGGGGAAACATGTCATAGTCCACAATAACTACATTATCGGTTACGA 1190
Query 1080 CAACAAAATGAGACGTTTCCAAGAATATGGTCTATGGCTAGTCGATGATCATACTCTCGA 1139
| ||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1191 TAGGAAAATGAGACGGTTCCAAGATTATGGTCTATGGCTAGTCGATGATCATGCTCTCGA 1250
Query 1140 GTCTCCATTAGGGAAATTACAGTAAATTCCAATTGATAAAGAAAGATAG-TACCACTGAG 1198
|||||||||||||||||| |||||||||| ||| | ||||||||||||| | ||| ||||
Sbjct 1251 GTCTCCATTAGGGAAATTGCAGTAAATTCGAATGGCTAAAGAAAGATAGAT-CCATTGAG 1309
Query 1199 TAAACTCCTTATG---TTTTTGAGGGTCCTTAAAAGGTAATATTATGTAAGT-TT-TATT 1253
|||| |||||| | |||||| || || ||||| |||| | || | || || ||||
Sbjct 1310 TAAATTCCTTA-GAACTTTTTG-GGATCTTTAAA-GGTA-TGCG-TG-A-GTGTTATATT 1362
Query 1254 A--TATGGCTAATTCAGTATGACTTGAGTTTGGTTAATCCAGTTGTGTAATGTT-AGTAA 1310
| |||| |||||||| |||||||||||||| |||||||||||||| |||||| ||||
Sbjct 1363 ACATATGACTAATTCATTATGACTTGAGTTTTGTTAATCCAGTTGT--AATGTTTAGTAG 1420
Query 1311 AAACAGAGGAAAACAGGG 1328
||||||||||||||||||
Sbjct 1421 AAACAGAGGAAAACAGGG 1438
> AT4G01770.1 | Symbols: RGXT1 | rhamnogalacturonan xylosyltransferase
1 | chr4:764514-766865 FORWARD LENGTH=1405
Length=1405
Score = 1659 bits (898), Expect = 0.0
Identities = 1252/1411 (89%), Gaps = 71/1411 (5%)
Strand=Plus/Plus
Query 11 CAAGCTTGTGAAAGTTTCT-CTGCAAATCTTGTTGCTCTGCTGCTACAACAATGGCGCAG 69
||| ||||| ||| ||||| || ||||| |||||||||| ||||||||||||||| ||||
Sbjct 1 CAAACTTGTAAAATTTTCTCCT-CAAATTTTGTTGCTCTACTGCTACAACAATGGAGCAG 59
Query 70 AAACAACAGATTCTTCACCAACAACG-ACCATTCTCTTCCTCTCCTCGTTCTTATTCTTC 128
|||||||| |||||| | ||||| | | ||||||||||||||||| |||||||||||||
Sbjct 60 AAACAACATATTCTT-A--AACAAAGTA-CATTCTCTTCCTCTCCTAGTTCTTATTCTTC 115
Query 129 AATCTCAAACCGTCCCATCTTTCTCCTTAGCCGCAACGGtctcctccttctccttctcgc 188
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 116 AATCTCAGACCGTCCCATCTCTCTCCTTAGCCGCAACGGTCTCCTCCTTCTCCTTCTCGC 175
Query 189 tctcttccttctccttGGTGTATTCTTACCCTGGCCAGGATCT-CCTCTGTTGCTATTAC 247
|||| |||| ||||| |||||| |||| ||||||||||||||| ||| | || || || |
Sbjct 176 TCTCGTCCTGCTCCTCGGTGTACTCTTGCCCTGGCCAGGATCTCCCT-TATTCCTGTTTC 234
Query 248 CAAACAAAGTCTCTTCTCCTTCTAATGCTACTTCTTTGTCTTCACAAGCCAAATCTGAAT 307
| || | || || |||| ||||| || | | | ||| || | | | | || |||
Sbjct 235 C-AA-ATAGACT-TTCTTCTTCT-TTG-T-C-AC--CGTC-TC-C--G-C-AGTCCAAAT 279
Query 308 GGCGCGACTATACCCTCGCTCAGGCCGCTAAGTTCGTGGCCAAGAACGGCACTGTGATCG 367
|||||||||||||||| |||||||| |||| ||||||||||||||| ||||||||||| |
Sbjct 280 GGCGCGACTATACCCTTGCTCAGGCGGCTAGGTTCGTGGCCAAGAATGGCACTGTGATAG 339
Query 368 TCTGCGCCGTGAGCTCACCATTCTTGCCTTTTCTTAACAACTGGTTGATTAGTGTTTCTA 427
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 340 TCTGCGCCGTGAGCTCACCATTCTTGCCTTTTCTCAACAACTGGTTGATTAGTGTTTCTA 399
Query 428 GACAGAAGCATCAAGAAAAAGTCCTTGTGATCGCTGAGGATTACATTACTCTGTATAAAG 487
|||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 400 GACAAAAGCATCAAGACAAAGTCCTCGTGATCGCTGAGGATTACATTACTCTGTATAAAG 459
Query 488 TCAACGAGAAGTGGCCTGGCCATGCCGTTCTTATTCCTCCTGCGCTCGATTCTAGAACCG 547
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||
Sbjct 460 TCAACGAGAAGTGGCCTGGCCACGCCGTTCTTATTCCTCCAGCGCTCGATTCTAAAACCG 519
Query 548 CATACAGTTTCGGTTCCCAGGGTTTCTTCAATTTCACAGCTCGAAGGCCGCAACATCTCT 607
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 CATTCAGTTTCGGTTCCCAGGGTTTCTTCAATTTCACAGCTCGAAGGCCGCAACATCTCT 579
Query 608 TGCAAATTTTGGAGCTAGGTTACAATGTTATGTACAACGATGTTGATATGGTTTGGTTGC 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 TGCAAATTTTGGAGCTAGGTTACAATGTTATGTACAACGATGTTGATATGGTTTGGTTGC 639
Query 668 AAGATCCGTTTCAGTATTTGGAGGGAAGCCACGACGCGTACTTCACGGATGATATGCCTC 727
||||||| |||| |||||||||||||||||| |||||||| ||||| ||||| |||||||
Sbjct 640 AAGATCCATTTCTGTATTTGGAGGGAAGCCATGACGCGTATTTCACCGATGACATGCCTC 699
Query 728 AAATTAAGCCTTTGAATCACTCTCATGATTTACCAGATCCGGATCAAAACGGAGAGACTT 787
|||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 700 AAATAAAGCCTTTGAATCACTCTCATGATTTACCACATCCGGATCGAAACGGAGAGACTT 759
Query 788 ATATATGTAGCTGCATGATTTACTTGCGTCCCACTGA-TGGTGCAAAGCTTCTAATGAAG 846
|||||||||||||||||||||||||||| || || || ||||||||||||||||||||||
Sbjct 760 ATATATGTAGCTGCATGATTTACTTGCGACCTAC-GAATGGTGCAAAGCTTCTAATGAAG 818
Query 847 AAATGGAGTGAGGAACTTCAATCCCAAGCTTGGTCTGAGTCCATCCGTTTTAAAGCAAAT 906
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 819 AAATGGAGTGAGGAACTTCAATCCCAAGCTTGGTCTGAATCCATCCGTTTTAAAGCAAAT 878
Query 907 GACCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCTCATCAAGTGGATCTGTACTTG 966
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 879 GATCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCTCATCAAGTGGATCTCTACTTG 938
Query 967 CTCTCGCAAGTAGCTTTTCCAACAGGAGGATTGTACTTCA-GTAACGAGGCATGGGTTAA 1025
|| || ||||||||||| |||||||||||||||||||||| | ||||||||||||||| |
Sbjct 939 CTTTCTCAAGTAGCTTTCCCAACAGGAGGATTGTACTTCAAG-AACGAGGCATGGGTTCA 997
Query 1026 AGAGACAAAGGGGAAACATGTCATAATCCACAATAACTACATTATCGGTTACGACAACAA 1085
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 998 AGAGACAAAGGGGAAACATGTCATAGTCCACAATAACTACATTATCGGTTACGACAGGAA 1057
Query 1086 AATGAGACGTTTCCAAGAATATGGTCTATGGCTAGTCGATGATCATACTCTCGAGTCTCC 1145
||||| |||||||||||| || ||||||||||| ||||||||||| |||| ||||||||
Sbjct 1058 AATGAAACGTTTCCAAGATTACGGTCTATGGCTTGTCGATGATCACGCTCTTGAGTCTCC 1117
Query 1146 ATTAGGGAAATTACAGTAAATTCCAATTGATAAAGAAAGATAG-TACCACTGAGTAAACT 1204
||||||||||||| |||||| || ||| | ||||||||||||| | |||||||||||| |
Sbjct 1118 ATTAGGGAAATTAGAGTAAACTCGAATGGCTAAAGAAAGATAGAT-CCACTGAGTAAATT 1176
Query 1205 CCTTATGTTTTTGAGGG-TCCTTAAAAGGTAATATTATGTAAGTTTTATTATATGGCTAA 1263
||||| ||||| ||| || |||| | | | | | ||| || ||||| ||||
Sbjct 1177 CCTTACAATTTTG-GGGATC-TTAA----T--TGTGA-G---GTT--AT-ATATGACTAA 1221
Query 1264 TTCAGT-ATGACTTGAGTTTGGTTAATCCAGTTGTGTAATGTT-AGTA-AAAACA--GAG 1318
||| || |||| ||||||||||||||||||||||| |||||| |||| |||| | |||
Sbjct 1222 TTC-GTTATGATTTGAGTTTGGTTAATCCAGTTGT--AATGTTTAGTAGAAAAAAAAGAG 1278
Query 1319 GAAAACAGGGGAAA---A-A--TA-TCAGATATTTT-GC-A-A-A----TTTTGGTCTGT 1363
|||||||||||||| | | || ||| | | ||| || | | | |||||||||||
Sbjct 1279 GAAAACAGGGGAAATTCAGAGATAGTCA-A-AGTTTCGCGACAGACAAATTTTGGTCTGT 1336
Query 1364 ATGTTGTAAACAAATGAGATTCGAGATGTAT 1394
|||| |||||||||||||| || ||||||||
Sbjct 1337 ATGTAGTAAACAAATGAGACTCAAGATGTAT 1367
> AT4G01220.1 | Symbols: | Nucleotide-diphospho-sugar transferase
family protein | chr4:513213-515853 REVERSE LENGTH=1506
Length=1506
Score = 926 bits (501), Expect = 0.0
Identities = 906/1091 (83%), Gaps = 69/1091 (6%)
Strand=Plus/Plus
Query 97 CCATTCTCTTCCTCTCCTCGTTCTTA-TTCTTCAATCTCAAACCGTCCCATCTTTCTCCT 155
||||||||||| ||||||| ||| | ||||||||||||||| ||||| |||| ||| ||
Sbjct 260 CCATTCTCTTCTTCTCCTCTTTC-CACTTCTTCAATCTCAAATCGTCCAATCTCTCTACT 318
Query 156 TAGCCGCAACGGtctcctccttctccttctcgctctcttccttctccttGGTGTATTCTT 215
||||||||||||||||| | ||||||||||||||| || || |||| || ||||||||
Sbjct 319 CAGCCGCAACGGTCTCCT-C--CTCCTTCTCGCTCTCCTCGTTATCCTCGGCGTATTCTT 375
Query 216 ACCCTGGCCAGGATCTCCTCTGTTGCTATTACCAAACAAAGTCTCTTCTCCTTCTAATGC 275
||||||| |||||||| | | || |||| || | | || || | | ||
Sbjct 376 ACCCTGGGCAGGATCT-C-C--TT--TATT-CC---C---G--TC-TC-CAAAC-AA--- 414
Query 276 TACTTCTTTGTCTTCACAAGCCAAATCTGAATGGCGCGACTATACCCTCGCTCAGGCCGC 335
|| ||| | |||| ||| || | |||||||||||||| ||||| |||| || |
Sbjct 415 -AC-TCTCT-CCTTCTCAATCC--A----AATGGCGCGACTATTCCCTCCCTCAAGCTG- 464
Query 336 T-AAGTTCGTGGCCAAGAACGGCACTGTGATCGTCTGCGCCGTGAGCTCA-CCATT-CTT 392
| || ||||| || |||||||| ||||||||||| |||||||| |||| | || || |||
Sbjct 465 TCAAATTCGTAGCTAAGAACGGGACTGTGATCGTATGCGCCGTTAGCT-ATCC-TTACTT 522
Query 393 GCCTTTTCTTAACAACTGGTTGATTAGTGTTTCTAGACAGAAGCATCAAGAAAAAGTCCT 452
||| ||||| ||||| |||||||||||||||||||||||||||||||| || |||| ||
Sbjct 523 GCCGTTTCTCAACAATTGGTTGATTAGTGTTTCTAGACAGAAGCATCAGGATCAAGTTCT 582
Query 453 TGTGATCGCTGAGGATTACATTACTCTGTATAAAGTCAACGAGAAGTGGCCTGGCCATGC 512
|| ||||||||||||||| |||||| || ||||| |||||||| |||||||| || ||
Sbjct 583 CGTCATCGCTGAGGATTACGCTACTCTCTACAAAGTTAACGAGAAATGGCCTGGTCACGC 642
Query 513 CGTTCTTATTCCTCCTGCGCTCGATTCT-AGAACCGCAT-ACAGTTTCGGTTCCCAGGGT 570
|||||| |||||||| |||||||||||| || ||||| | ||| |||||||| |||||
Sbjct 643 CGTTCTCATTCCTCCGGCGCTCGATTCTCAG-ACCGC-TCACAAATTCGGTTCTCAGGGA 700
Query 571 TTCTTCAATTTCACAGCTCGAAGGCCGCAACATCTCTTGCAAATTTTGGAGCTAGGTTAC 630
||||||||||||||||| || |||||||||||||||||| ||||||||||| ||||||||
Sbjct 701 TTCTTCAATTTCACAGCACGGAGGCCGCAACATCTCTTGGAAATTTTGGAGTTAGGTTAC 760
Query 631 AATGTTATGTACAACGATGTTGATATGGTTTGGTTGCAAGATCCGTTTCAGTATTTGGAG 690
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 761 AATGTTATGTACAACGATGTTGATATGGTTTGGTTGCAAGATCCGTTTCAGTATTTAGAG 820
Query 691 GGAA-GCCACGACGCGTACTTCACGGATGATATGCCT-CAAATTAAGCCTTTGAATCACT 748
|||| || |||| || ||||||| |||||||||| || ||| ||||||||||| ||||||
Sbjct 821 GGAAAGC-ACGATGCTTACTTCATGGATGATATGACTGCAA-TTAAGCCTTTGGATCACT 878
Query 749 CTCATGATTTACCAGATCCGGATCAAAACGGAGAG-ACTTATATATGTAGCTGCATGATT 807
|||||||||||||| ||||| | |||| ||| || |||||||| |||||||| ||||||
Sbjct 879 CTCATGATTTACCACCTCCGGGTAAAAAAGGA-AGGACTTATATTTGTAGCTGTATGATT 937
Query 808 TACTTGCGTCCCACTGATGGTGCAAAGCTTCTAATGAAGAAATGGAGT-GAGGAACTTCA 866
| ||||||||||||| |||| ||||| ||||| ||||||||||||| | ||||| ||| |
Sbjct 938 TTCTTGCGTCCCACTAATGGCGCAAAACTTCTCATGAAGAAATGGA-TCGAGGAGCTTGA 996
Query 867 ATCCCAAGCTTGGTCT-GAGTCCATCCGTTTTAAAGCAAATGACCAGCCTGCTTTTAACT 925
| | ||| ||||||| ||| | | | ||||||||||| ||||||| ||||||||
Sbjct 997 AACGCAACCTTGGTCCAGAG-CTAA--G----AAAGCAAATGATCAGCCTGGTTTTAACT 1049
Query 926 TGGCACTTAACAAAACAGCTCATCAAGTGGATCTGTACTTGCTCTCGCAAGTAGCTTTTC 985
||||||||||||||||||| |||| |||||| |||||||||| ||||| | |||||| |
Sbjct 1050 GGGCACTTAACAAAACAGCTAATCAGGTGGATATGTACTTGCTTTCGCAGGCAGCTTTCC 1109
Query 986 CAACAGGAGGATTGTACTTCA-GTAACGAGGCATGGGTTAAAGAGACAAAGGGGAAACAT 1044
|||||||||||||||| |||| | ||| | ||||||||||||| |||||||| ||||||
Sbjct 1110 CAACAGGAGGATTGTATTTCAAG-AACAAAACATGGGTTAAAGAAACAAAGGGAAAACAT 1168
Query 1045 GTC-ATAATCCACAATAACTACATTA-TCGGTTACGACAACAAAATGAGACGTTTCCAAG 1102
| | |||||||||||||||||||| | |||||| || || || || | |||||||| |
Sbjct 1169 G-CGATAATCCACAATAACTACAT-AGTCGGTTTTGAGAAGAAGATCAAACGTTTCCGTG 1226
Query 1103 AATATGGTCTATGGCTAGTCGATGATCATACTCTC-GAGTCTCCATTAGGGAAATTACAG 1161
| | | |||||||||||||||||||||| || || |||||||| |||||||||||| ||
Sbjct 1227 ACTTTAATCTATGGCTAGTCGATGATCATGCT-TCCGAGTCTCCTTTAGGGAAATTAGAG 1285
Query 1162 TAAATTCCAAT 1172
|||||||||||
Sbjct 1286 TAAATTCCAAT 1296
> AT1G56550.1 | Symbols: RXGT1 | RhamnoGalacturonan specific
Xylosyltransferase 1 | chr1:21185662-21188369 REVERSE
LENGTH=1625
Length=1625
Score = 848 bits (459), Expect = 0.0
Identities = 854/1040 (82%), Gaps = 45/1040 (4%)
Strand=Plus/Plus
Query 128 CAATCTCAAACCGTCCCATCTTTCTCCTTAGCCGCAACGG--tc-tcctccttctccttc 184
||||||||||||||| ||||| |||||| | ||| ||||| || |||||||||||||||
Sbjct 322 CAATCTCAAACCGTCACATCTCTCTCCTCAACCGTAACGGTCTCATCCTCCTTCTCCTTC 381
Query 185 tcgctctcttccttctccttGGTGTATTCTTACCCTGGCCAGGATC-TCCTCTGTTGC-T 242
| |||||||| || |||| |||||||||||||| | | || ||| |||| |||| | |
Sbjct 382 TAGCTCTCTTTGTTATCCTCGGTGTATTCTTACCTTTGACAAAATCTTCCT-TGTT-CAT 439
Query 243 ATTACCAAACA-AAGTC-TCTTCTCCTTCTAATGCTACTTCTT-TGTCTTCA-CAAGCCA 298
|| ||||||| || | |||||| | ||| | || |||||| | |||| | | | |
Sbjct 440 GTTTCCAAACACAA--CATCTTCTTC-TCT--TTCTCCTTCTTCT-TCTTTATC-GGTC- 491
Query 299 AATCTGAATGGCGCGACTATACCCTCGCTCAGGCCGCTAAGTTCGTGGCCAAGAACG-GC 357
|| || |||||||||||| |||| ||||| |||| |||||| || || ||||||| |
Sbjct 492 --TCCGACTGGCGCGACTATTCCCTTGCTCAAGCCGTTAAGTTTGTTGCTAAGAACGAG- 548
Query 358 ACTGTGATCGTCTGCGCCGTGAGCTCA-CCATTCTTGCCTTTTCTTAACAACTGGTTGAT 416
|||||||||||||| || || |||| | || |||||||||||||||||||||||||||||
Sbjct 549 ACTGTGATCGTCTGTGCTGTTAGCT-ACCCTTTCTTGCCTTTTCTTAACAACTGGTTGAT 607
Query 417 TAGTGTTTCTAGACAGAAGCATCAAGAAAAAGTCCTTGTGATCGCTGAGGATTACATTAC 476
||| ||||||||||||| |||||||||||||| |||||||||||||| || || |||
Sbjct 608 TAGCATTTCTAGACAGAAACATCAAGAAAAAGTTCTTGTGATCGCTGAAGACTATGCTAC 667
Query 477 TCTGTATAAAGTCAACGAGAAGTGGCCTGGCCATGCCGTTCTTATTCCTCCTGCGCTCGA 536
| |||| ||||||||||| ||||||||||| ||||| ||||| |||||||| ||| | ||
Sbjct 668 TTTGTACAAAGTCAACGAAAAGTGGCCTGGTCATGCTGTTCTCATTCCTCCGGCGTTGGA 727
Query 537 TTCTAGAA-CCGCATACAG-TTTCGGTTCCCAGGGTTTCTTCAATTTCACAGCTCGAAGG 594
| || || ||||| ||| ||| ||||||||||||||||||||| | ||| |||| |||
Sbjct 728 TCCTC-AATCCGCACACAAATTT-GGTTCCCAGGGTTTCTTCAATCTGACATCTCGGAGG 785
Query 595 CCGCAACATCTCTTGCAA-ATTTTGGAGCTAGGTTACAATGTTATGTACAACGATGTTGA 653
|| ||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 786 CCACAACATCTCTTA-AACATTTTGGAGCTAGGTTACAATGTTATGTACAATGATGTTGA 844
Query 654 TATGGTTTGGTTGCAAGATCCGTTTCAGTATTTGGAGGGAAGCCACGACGCGTACTTCAC 713
|||||| ||| | |||||||| ||| | ||||| | |||||| |||| || |||||||
Sbjct 845 TATGGTCTGGCTACAAGATCCATTTGACTATTTACAAGGAAGCTACGATGCATACTTCAT 904
Query 714 GGATGATATGCCT-CAAATTAAGCCTTTGAATCACTCTCATGATTTACCAGATCCG-GAT 771
|||||| ||| | | | ||||||||||||||||||| |||||||||||| || | |
Sbjct 905 GGATGACATGATTGCGA-TTAAGCCTTTGAATCACTCCCATGATTTACCACCTCTAAG-T 962
Query 772 CAAAACGGAGAGACTTATATATGTAGCTGCATGATTTACTTGCGTCCCACTGATGGTGCA 831
| || ||||| |||||| |||||||||||||||||| ||||||| |||||||||| | |
Sbjct 963 CGAAGCGGAGTTACTTATGTATGTAGCTGCATGATTTTCTTGCGTTCCACTGATGGCGGA 1022
Query 832 AAGCTTCTAATGAAGAAATGGAGT-GAGGAACTTCAATCCCAAGCTTGGTCTGAGTC-CA 889
|||||||||||||||| |||| || |||||| ||||| | ||| ||||| | | | ||
Sbjct 1023 AAGCTTCTAATGAAGACATGG-GTCGAGGAAATTCAAGCTCAACCTTGGAATAACACTCA 1081
Query 890 TCCGTTTTAAAGCAAATGACCAGCCTGCTTTTAACTTGG-CACTTAACAAAACAGCTCAT 948
| ||| || |||| |||||||||||||| | || ||||| ||||||||||| ||
Sbjct 1082 AGCAAAG-AAACCACATGATCAGCCTGCTTTTAA-TCGGGCACTTCACAAAACAGCTAAT 1139
Query 949 CAAGTGGATCTGTACTTGCTCTC-GCAAGT-AGCTTTTCCAACAGGAGGATTGTACTTCA 1006
||||| | | |||||||| || |||| | |||||| ||| ||||||||||||||||||
Sbjct 1140 CAAGTAAAAGTCTACTTGCT-TCCGCAA-TCAGCTTTCCCATCAGGAGGATTGTACTTCA 1197
Query 1007 GTAACGAGGCATGGGTTAAAGAGACAAAGGGGAAACATGTCATAATCCACAATAACTACA 1066
| || ||| |||||||||| ||||||| |||||||||||||||| |||||||||||||||
Sbjct 1198 GGAATGAGACATGGGTTAACGAGACAAGGGGGAAACATGTCATAGTCCACAATAACTACA 1257
Query 1067 TTATCGGTTACGACAACAAAATGAGACGTTTCCAAGAATATGGTCTATGGCTAGTCGATG 1126
|||||||||||||||| || |||| |||||| ||||| | | ||||||||||||||||||
Sbjct 1258 TTATCGGTTACGACAAGAAGATGAAACGTTTTCAAGACTTTAGTCTATGGCTAGTCGATG 1317
Query 1127 ATCATACTCTCGAGTCTCCA 1146
||||| |||| ||||| |||
Sbjct 1318 ATCATGCTCTTGAGTCCCCA 1337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68674345560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5