BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490402
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01735.1 | Symbols: | unknown protein; Has 30201 Blast hits... 856 0.0
> AT4G01735.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:752288-752873
REVERSE LENGTH=561
Length=561
Score = 856 bits (463), Expect = 0.0
Identities = 533/566 (94%), Gaps = 7/566 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGAGAACCAGAACCAGTTTTGTAGAAAAGAGACTGATCCTTCACTCTCGGCTCAA 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGAGAACCAGAACCAGTTTTGTAGACAAGAGACTGATCCTTCACTCTCGGCTCAA 60
Query 61 GCCATGGGGGAGCATCAGCGGATTGAAACCTCTGGTTTAGCAGAAGTCACAGATCCCTCA 120
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 61 GCCATGGGGGAGCATCAGCGGATTGGAACCTCTGGTTTAGTAGAAGACACAGATCCCTCA 120
Query 121 CAACTTCCAATGGAGCTTCAAGAAGAATACATATTGGGTCATCAACATCAACACTTCTCA 180
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 121 CAACTTCCAATGGAGCTTCAAGAAGAATACATATTGGATCATCAAGATCAACACTTCTCA 180
Query 181 ATGGAGCAACAACAAAACCAGATTACTGGACAAGCCACACATCTCTCTTCACAGCTTCCA 240
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 ATGGAGCAACAACAAAACAAGATTATTGGACAAGCCACACATCTCTCTTCACAGCTTCCA 240
Query 241 GTTATGATGAATGAAGCCGTAGATGAACCG-CATTATTGTCATCAGCCATATCATCAGAA 299
|||||||||||| ||||| ||||||||| | |||| ||||| |||||||||||| ||
Sbjct 241 GTTATGATGAATCAAGCCATAGATGAAC-GACATTGCTGTCA---GCCATATCATCAAAA 296
Query 300 CAATGATCTTTCAGTGGTTCCTATGGAGACTCAACAACAAGACAATGTGGTCGGAAACTT 359
||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 297 CAATGATCTTTCAGTCGTTCCTATGGAGACTCAACAACAACACAATGTGGTTGGAAACTT 356
Query 360 GGCTTCTCAACTACAACTTGAGGAACAAGACAATGTTCCGGTGGTGACTATGAATCAAAC 419
||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 357 GGCTTCTCAACAACAACTTGAGGAACAAAACAATGTTCCGGTGATGACTATGAATCAAAC 416
Query 420 CACAGAACAGCAGCAACCTTGTGAA-CAAGCCACTACTCACAACGAATTGATAGAAGAGA 478
||||||||||||||||||||||||| || ||||||||||||||||||||| | ||||||
Sbjct 417 CACAGAACAGCAGCAACCTTGTGAAACA-GCCACTACTCACAACGAATTGTTTCAAGAGA 475
Query 479 TGGATCCAGAGATTGCTAGTTTATTACTTGGACAAAACACAACAGAAGAAGATGCTAATT 538
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 476 TGGATCCAGAGATTGCTAGTTTATTACTTGTACAAAACACAACAGAAGAAGATGCTAAGT 535
Query 539 TTTTGGCTACATTAGGAAACTTTTAG 564
|| ||||| |||||||||||||||||
Sbjct 536 TTATGGCTTCATTAGGAAACTTTTAG 561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27076205233
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5