BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490404
Length=1603
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01720.1 | Symbols: WRKY47, AtWRKY47 | WRKY family transcrip... 2300 0.0
> AT4G01720.1 | Symbols: WRKY47, AtWRKY47 | WRKY family transcription
factor | chr4:744921-748554 FORWARD LENGTH=1833
Length=1833
Score = 2300 bits (1245), Expect = 0.0
Identities = 1451/1548 (94%), Gaps = 23/1548 (1%)
Strand=Plus/Plus
Query 1 tctctctctatctctctTTGTCTGCAAATGGAAGAACATATTCAAGATCGCCGTGAAATT 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TCTCTATCTATCTCTCTTTGTCTGCAAATGGAAGAACATATTCAAGATCGCCGTGAAATT 61
Query 61 GCGTTCCTACACTCCGGTGAATTTCTCCAGGGAGATTCCGACTCAAAGGATCATCAACCG 120
|||||| ||||||| || ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 62 GCGTTCTTACACTCAGGAGAATTTCTCCACGGAGATTCTGACTCAAAGGATCATCAACCG 121
Query 121 AATGAGTCTCCGGATGAGGAACATCATCACGAG-CAGTCTATCAAAGAAGTTGATTTCTT 179
|| |||||||||| | ||||| |||||||||| | ||||||||||||||||||||||||
Sbjct 122 AACGAGTCTCCGG-T--GGAACGTCATCACGAGTC-GTCTATCAAAGAAGTTGATTTCTT 177
Query 180 CGCAGCCAAAAGTCA-CCGGAGCGATCTTGGTCATGTGAGAACGACGTCGATCGTTGGAT 238
||| || |||||||| || | |||||||||||||||||||| ||| ||||||||||||
Sbjct 178 CGCTGCTAAAAGTCAGCC-GTTTGATCTTGGTCATGTGAGAACAACGACGATCGTTGGAT 236
Query 239 CATCTGGTTTTAATGATGGATTAGGTTTGGTAAATTCATGTCATGGAACATCAAGCGATG 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 237 CATCTGGTTTTAATGATGGATTAGGTTTGGTAAATTCATGTCATGGAACATCAAGCAATG 296
Query 299 ATGGCGATGACACAACCAAAACTCAAATTAGTAGACTGAAATTGGAGCTAGAGAGGCTTC 358
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 297 ATGGCGATGACAAAACCAAAACTCAAATTAGTAGACTGAAGTTGGAGCTAGAGAGGCTTC 356
Query 359 ACGAGGAAAATCACAAGCTGAAGCATTTATTAGATGAGGTCAGTGAGAGTTACAACGACC 418
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ACGAGGAGAATCACAAACTGAAGCATTTATTAGATGAGGTCAGTGAGAGTTACAACGACC 416
Query 419 TCCAAAGAAGAGTTTTGTTGGCAAGACAAACACAAGTGGAAGGTC-T--TCATAAACAAC 475
||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||
Sbjct 417 TCCAAAGAAGAGTTTTGTTAGCAAGACAAACACAAGTGGAAGGTCTTCATCATAAACAAC 476
Query 476 ATGAGGTACTTGTACCCCAAGCTGGTTCCTCACAAGCTCTGGAGGACAGAAGACCATTGG 535
|||||| | |||||| ||||||||||||||||||||||| ||| ||||||||||| ||
Sbjct 477 ATGAGG-A--TGTACCTCAAGCTGGTTCCTCACAAGCTCTAGAGAACAGAAGACCAAAGG 533
Query 536 ATATGAACAATGAAACTCCGGCCACCACCTTGAAACGACGGACTCCGGACGATGTGGATG 595
|||||||| |||||||||||||||||||||||||||||||| |||| ||||| |||||||
Sbjct 534 ATATGAACCATGAAACTCCGGCCACCACCTTGAAACGACGGTCTCCAGACGACGTGGATG 593
Query 596 ATCGTGATATGCACCGAGGATCACCAAAAACTCCAAGATTAGACCAAAACAGGAGTACTA 655
||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||
Sbjct 594 GTCGTGATATGCACCGAGGATCACCAAAAACTCCTCGAATAGACCAAAACAAGAGTACTA 653
Query 656 ATCATGAAGAACAACAAAACCCTCATGATCAATTACCCTTTAGAAAAGCTAGGGTTTCCG 715
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 654 ATCATGAAGAACAACAAAACCCTCATGATCAATTACCCTATAGAAAAGCTAGGGTTTCCG 713
Query 716 TTAGAGCTAGATCTGATGCCACTACGGTAAATGACGGATGTCAGTGGAGAAAATACGGTC 775
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 714 TTAGAGCTAGATCTGATGCCACTACGGTAAATGACGGATGTCAATGGAGAAAATACGGTC 773
Query 776 AGAAAATGGCAAAAGGGAATCCATGTCCTCGAGCTTACTATCGTTGCACTATGGCTGTTG 835
|||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||| ||||
Sbjct 774 AGAAAATGGCGAAAGGGAATCCATGTCCTCGCGCTTATTATCGTTGCACCATGGCCGTTG 833
Query 836 GATGTCCTGTCCGTAAACAGGTACAACGATGCGCCGAGGATACAACTATCTTGACCACAA 895
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 834 GATGTCCTGTCCGTAAACAGGTCCAACGATGCGCGGAGGATACAACTATCTTGACAACAA 893
Query 896 CGTACGAAGGAAACCATAACCATCCTCTTCCACCGTCAGCCACCGCCATGGCTGCAACCA 955
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 894 CGTACGAAGGAAACCATAACCATCCTCTTCCCCCGTCAGCCACAGCCATGGCTGCAACCA 953
Query 956 CTTCCGCTGCAGCCGCCATGCTCTTATCTGGCTCCACCACCAGCAACTTCCATCAAACAC 1015
| ||||| ||||| |||||||||||||| |||||| || |||||||| |||| |||||||
Sbjct 954 CCTCCGCCGCAGCAGCCATGCTCTTATCAGGCTCCTCCTCCAGCAACCTCCACCAAACAC 1013
Query 1016 TCTCTAGCCCCTCCGCCACGTCATCATCTTCCTTCTACCATAACTTCCCATACACTTCCA 1075
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1014 TCTCTAGCCCCTCCGCCACGTCATCATCATCCTTCTACCATAACTTCCCATACACCTCCA 1073
Query 1076 CAATTGCCACACTCTCCGCCTCAGCTCCTTTCCCCACCATAACCTTAGACCTCACCAACC 1135
|||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 CAATCGCAACACTCTCTGCCTCAGCTCCTTTCCCCACCATAACCTTAGACCTCACCAACC 1133
Query 1136 CGCCTCGACCGCTACAACCGCCACAGCAGTTTCTGAGCCAGTATGGTCCCGCCGCGTTTA 1195
| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1134 CACCTCGACCGCTACAACCGCCACCGCAGTTTCTAAGCCAGTATGGTCCCGCCGCGTTTT 1193
Query 1196 TACCAAACGCTAATCAAATTAGGTCTATGAATAATAATAACCAGCAGTTATTAATACCTA 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TACCAAACGCTAATCAAATTAGGTCTATGAATAATAATAACCAGCAGTTATTAATACCTA 1253
Query 1256 ATTTGTTTGGCCCACAAGCCCCACCACGTGAAATGGTCGATTCAGTTAGGGCTGCGATTG 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 ATTTGTTTGGCCCACAAGCCCCACCACGTGAAATGGTCGATTCAGTTAGGGCTGCGATTG 1313
Query 1316 CAATGGATCCGAATTTCACGGCGGCGCTTGCGGCGGCGATCTCAAACATTATCGGAGGAG 1375
| ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1314 CGATGGATCCGAACTTCACGGCGGCACTTGCGGCCGCGATCTCAAACATTATCGGAGGAG 1373
Query 1376 Gtaataacgacaataataataat---gatattaataataataaGGTTGATGCGAAAAGTG 1432
||||||||||||| ||||||||| ||||||||| |||| ||||||||||| |||||||
Sbjct 1374 GTAATAACGACAACAATAATAATACTGATATTAATGATAACAAGGTTGATGCAAAAAGTG 1433
Query 1433 GAGGGAGTAGTAACGGAGATTCGCCACAGCTTCCTCAGTCTTGCACCACTTTCTCTACAA 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 GAGGGAGTAGTAACGGAGATTCGCCACAGCTTCCTCAGTCTTGCACCACTTTCTCTACAA 1493
Query 1493 ACTAattt-atcttat-atatat-atatgttattattattatatatta 1537
|||||||| | || | || ||| ||||||||| |||||||||||||
Sbjct 1494 ACTAATTTTA-CT-ACCAT-TATTATATGTTATC-TTATTATATATTA 1537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79166259465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5