BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490409
Length=1366
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01680.2 | Symbols: MYB55 | myb domain protein 55 | chr4:716... 1720 0.0
> AT4G01680.2 | Symbols: MYB55 | myb domain protein 55 | chr4:716021-717415
REVERSE LENGTH=1248
Length=1248
Score = 1720 bits (931), Expect = 0.0
Identities = 1026/1071 (96%), Gaps = 10/1071 (1%)
Strand=Plus/Plus
Query 305 CAGAGATGTGGAAAAAGCTGTAGATTACGATGGATAAATTATTTAAGACCAGATTTGAAG 364
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 175 CAGAGATGTGGAAAAAGTTGTAGATTAAGATGGATAAATTATTTAAGACCAGATTTGAAG 234
Query 365 CGAGGAGCATTTTCTCAAGATGAAGAAAATCTCATTATTGAACTTCATGCCGTTCTTGGC 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 AGAGGAGCATTTTCTCAAGATGAAGAAAATCTCATTATTGAACTTCATGCCGTTCTTGGC 294
Query 425 AATAGGTGGTCTCAGATAGCTGCACAACTTCCTGGAAGAACCGACAATGAAATCAAGAAT 484
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 295 AATAGATGGTCTCAGATAGCTGCACAGCTTCCTGGAAGAACCGACAATGAAATCAAGAAT 354
Query 485 CTTTGGAATTCTTGTTTGAAGAAGAAATTGAGGCTGAGAGGAATTGACCCGGTTACACAC 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CTTTGGAATTCTTGTTTGAAGAAGAAATTGAGGCTGAGAGGAATTGACCCGGTTACACAC 414
Query 545 AAGCTCTTAACTGAAATCGAAACCGGTACAGATGACAAACCCAAACCGGTTGAGAAGAGT 604
||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 415 AAGCTCTTAACCGAAATCGAAACCGGTACAGATGACAAAACAAAACCGGTTGAGAAGAGT 474
Query 605 CAACAGACCTACCTCGTTGAGACTGATGGCTCCTCTAGTACCACTACTTGCAGTACTAAC 664
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 475 CAACAGACCTACCTCGTTGAGACTGATGGCTCCTCTAGTACCACTACTTGTAGTACTAAC 534
Query 665 CAAAACAACAACACTGATCATCTTTATACCGGAAATTTCGGTTTTCAACGGTTAAGTCTA 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CAAAACAACAACACTGATCATCTTTATACCGGAAATTTCGGTTTTCAACGGTTAAGTCTA 594
Query 725 GAAAACGGTTCACGAATCGCAACCGGTTCTGACCTCGGCATCTGGATTCCCCAAACCGGA 784
|||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 595 GAAAACGGTTCAAGAATCGCAGCCGGTTCTGACCTCGGTATCTGGATTCCCCAAACCGGA 654
Query 785 AGAAACCATCATCATCATGTCGATGAAACCATCCCTAGTGCAGTGGTGTTACCCGGTTCA 844
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 655 AGAAACCATCATCATCATGTCGATGAAACCATCCCTAGTGCAGTGGTACTACCCGGTTCA 714
Query 845 ATGTTCTCTTCCAGTTTAACCGGTTACAGATCATCCAATCTCGGTTTAATTGAATTGGAA 904
|||||||| ||| ||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 715 ATGTTCTCATCCGGTTTAACCGGTTATAGATCCTCCAATCTCGGTTTAATTGAATTGGAA 774
Query 905 AACTCATTCTCTACCGGGCCAATGATGACAGAGCATCAGCAGCTTCAGGAGAGTAACTAC 964
||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 775 AACTCATTCTCAACCGGGCCAATGATGACAGAGCATCAGCAAATTCAAGAGAGTAACTAC 834
Query 965 AACAATTCAACATTCTTTGGAAATGGGAATCCGAACTGGGGAATAACAATGGAGGAAAAT 1024
||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||
Sbjct 835 AACAATTCAACATTCTTTGGAAATGGGAATCTGAATTGGGGATTAACAATGGAGGAAAAT 894
Query 1025 CAAAATCCATTCACAATATCGAATCATTCAAATTCGTCGTTATACAGTGATATAAAATCA 1084
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 895 CAAAATCCATTCACAATATCGAATCATTCAAATTCGTCCTTATACAGTGATATAAAATCA 954
Query 1085 GAGACCAAtttttttGGTACAGAGGCTACAAATGTTAGTATGTGGCCATGTAACCAGCTC 1144
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 955 GAGACCAATTTTTTTGGCACAGAGGCTACAAATGTTGGTATGTGGCCATGTAACCAGCTC 1014
Query 1145 CAGCCTCAGCAACATGCATATGGCCATATATAAATCTTCTTGTATATTATAAGGTGTGTG 1204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 CAGCCTCAGCAACATGCATATGGCCATATATAAATCTTCTTGTATATTATAAGGTGTGTG 1074
Query 1205 AATCtt-ttttttttttCTTCTCAAATATGGAtttttttttA---AATGGTTTGTGTATA 1260
|||||| |||||||||| ||||||||||||| ||||||||| ||||| |||||||||
Sbjct 1075 AATCTTCTTTTTTTTTT-TTCTCAAATATGGTTTTTTTTTTTTTTAATGGGTTGTGTATA 1133
Query 1261 TAGTTTGTGTTATATATCATTTAATTTAACAGTATTGGTTTTTACAttttttt-t----A 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1134 TAGTTTGTGTTATATATCATTTAATTTAACAGTATTGGTTTTTACATTTTTTTGTTTTCA 1193
Query 1316 TATTCGATGTACTTTGTGAAGCACAGATTTATGGACTCTGGGAtttttttt 1366
|||||||||||| ||||||| ||||||||||||||||| |||||||| |||
Sbjct 1194 TATTCGATGTACCTTGTGAACCACAGATTTATGGACTCGGGGATTTTGTTT 1244
Score = 243 bits (131), Expect = 5e-63
Identities = 137/140 (98%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 164 ATGGGGAGACATTCATGCTGTTACAAACAGAAACTGAGGAAAGGACTTTGGTCTCCTGAA 223
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGACATTCATGTTGTTACAAACAGAAACTGAGGAAAGGACTTTGGTCTCCTGAA 60
Query 224 GAAGATGAGAAGCTTCTTCGTTACATCACTAAGTATGGTCATGGTTGCTGGAGCTCTGTC 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGATGAGAAGCTTCTTCGTTACATCACTAAGTATGGTCATGGTTGCTGGAGCTCTGTC 120
Query 284 CCTAAACAAGCTGGTATGTT 303
|||||||||||||||| |||
Sbjct 121 CCTAAACAAGCTGGTACGTT 140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67268730300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5