BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490412
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01650.1 | Symbols: | Polyketide cyclase / dehydrase and li... 1147 0.0
> AT4G01650.1 | Symbols: | Polyketide cyclase / dehydrase and
lipid transport protein | chr4:704578-705866 REVERSE LENGTH=867
Length=867
Score = 1147 bits (621), Expect = 0.0
Identities = 803/887 (91%), Gaps = 28/887 (3%)
Strand=Plus/Plus
Query 1 ATGCAATCTTCTCCCATCTTATTAGACTTCTCCTCCGCCTTTCACCACCCACGCGCCGCC 60
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGCAATCTTCTCCGATCTTATTAGACTTCTCTTCCGCCTTTCACCACCCACGCGCCGCC 60
Query 61 GCTTTAGCCACCACCTCC-GCCGTAACGATTTCACAGTCTCCGACTAAAAATTTTC-ACT 118
|| ||||||||||| ||| ||| |||||| |||||| |||||||||||||| | || ||
Sbjct 61 GCGTTAGCCACCACTTCCGGCC-TAACGAATTCACACTCTCCGACTAAAAAATATCGCCT 119
Query 119 CGCTATCCTCTTTTTCACCTTCCTCGACACTCTTAGcttcttcttcttcttctCGTAGAT 178
| || |||||||||| |||||||||||| | | | | | |||||||||||||||
Sbjct 120 -GATAACCTCTTTTTCGCCTTCCTCGACA--C-T-G---C-T-AGCTTCTTCTCGTAGAT 169
Query 179 GTTTCACCTGCCGATTTGGCGACGGTTCTTCGCGGTTCGATTC-AAGCGAAGATGAAACT 237
||||||||||||||||||||||| ||||| |||| ||| |||| || || || | | |
Sbjct 170 GTTTCACCTGCCGATTTGGCGACAGTTCTCCGCGATTCAATTCGAA-CG-AG--G--A-T 222
Query 238 GAAATTGAAATTGAAATTGATGATGAAGATGATTATTGTTTGACAGATGGGAAGACAGAG 297
|||| ||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 223 GAAACTGAAACTGAAACTGATGATGAAGATGATTATTGTTTGACAGATGGGAAAACAGAG 282
Query 298 GAATT-G--GTAGGCGACGATGGTGTTCTTATAGAGGTGAAGAAACTCGAGAAGAGCTCT 354
||||| | ||||| ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 283 GAATTGGTAGTAGGAGACGATGGTGTTCTTATAGAGTTGAAGAAGCTCGAGAAGAGCTCG 342
Query 355 CGTCGAATTCGTTCGAAGATTGGAATGGAAGCGAGTCTCGATTCCGTTTGGAGTGTATTG 414
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 343 CGTCGAATTCGTTCGAAGATTGGAATGGAAGCGAGTCTCGATTCCGTTTGGAGCGTATTG 402
Query 415 ACTGATTACGAGAAGTTATCTGATTTCATTCCAGGACTCGTTGTTAGCGAATTGGTTGAG 474
||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||
Sbjct 403 ACTGATTACGAGAAGCTATCTGATTTCATTCCAGGTCTTGTTGTTAGCGAATTGGTTGAG 462
Query 475 AAAGAAGGCAATCGTGTTCGTCTTTTCCAGATGGGACAGCAGAATTTAGCACTTGGT-CT 533
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct 463 AAAGAAGGCAATCGTGTTCGTCTTTTCCAGATGGGACAGCAGAACTTAGCA-TTGGGACT 521
Query 534 TAAGTTCAATGCCAAAGCTGTTTTAGATTGTTTTGAGAAAGAGCTTGAGATTTTGCCACA 593
|||||||||||||||||||||| ||||||||| ||||||||||||||| || |||||||
Sbjct 522 TAAGTTCAATGCCAAAGCTGTTCTAGATTGTTACGAGAAAGAGCTTGAGGTTCTGCCACA 581
Query 594 TGGGAGGAGACGTGAAATCGACTTTAAGATGGTCGAAGGCGATTTCCAATTGTTTGAAGG 653
||||||||||||||| || || ||||||||||| ||||| ||||| || |||||||||||
Sbjct 582 TGGGAGGAGACGTGAGATTGATTTTAAGATGGTTGAAGGAGATTTTCAGTTGTTTGAAGG 641
Query 654 CAAATGGTCTATCGAACAACTCGACAAAGGGATTCATGGGGAGTCTTTGGATTCACAGTT 713
||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 642 CAAATGGTCCATCGAACAACTCGACAAAGGGATTCATGGGGAGGCTTTGGATTTACAGTT 701
Query 714 TAAAGATTTTCGGACGACGCTTGCATACACGGCGGATGTAAAACCAAAAATGTGGTTACC 773
|||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||
Sbjct 702 TAAAGATTTTCGGACGACGCTTGCATACACGGTGGATGTAAAACCGAAGATGTGGTTACC 761
Query 774 AGTGCGGCTAGTTGAAGGAAGATTGTGCAAAGAGATTAA-AACAAATCTTACGAGTATCC 832
||||||||||| ||||||||||||||||||||||| || ||| ||||| | ||||||||
Sbjct 762 GGTGCGGCTAGTCGAAGGAAGATTGTGCAAAGAGAT-AAGAACTAATCTGATGAGTATCC 820
Query 833 GAGATGCAGCTCAGAAAGTTATTGAAGGTGTTATTCATGATCTTTGA 879
|||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 821 GAGATGCAGCACAGAAAGTTATTGAAGGTGTTATTCATGATCTTTGA 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42899961538
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5