BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490415
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01610.1 | Symbols: | Cysteine proteinases superfamily prot... 2135 0.0
AT1G02305.1 | Symbols: | Cysteine proteinases superfamily prot... 857 0.0
AT1G02300.1 | Symbols: | Cysteine proteinases superfamily prot... 473 2e-132
> AT4G01610.1 | Symbols: | Cysteine proteinases superfamily protein
| chr4:694695-697206 FORWARD LENGTH=1511
Length=1511
Score = 2135 bits (1156), Expect = 0.0
Identities = 1262/1314 (96%), Gaps = 3/1314 (0%)
Strand=Plus/Plus
Query 52 AAGATTCATTCCCCCACCACTGAGGTTTAACTTATACAAATAGATC-TTTTGGTTTTTGA 110
||||||||||| ||||||| |||||||||||||||||||| ||||| ||||| || ||
Sbjct 76 AAGATTCATTCTCCCACCATTGAGGTTTAACTTATACAAACAGATCTTTTTGAAATTGGA 135
Query 111 TTCATCGAAGAAGCAAACTCTGTTTTCATGGCTGATTACAATACCAAACTCTGTTTGGCC 170
|||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 136 TTCATCTAAGAAGCAGACTCTGTTTTCATGGCTGTTTACAATACCAAACTCTGTTTGGCC 195
Query 171 TCTGTTTTCTTGCTCTTAGGGCTTCTCTTGGCTTTTGACTTGAAGGGTATAGCAGCAGAA 230
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 196 TCTGTTTTCTTGCTCTTAGGGCTTCTCTTGGCTTTTGACTTGAAGGGTATAGAAGCAGAA 255
Query 231 AATCTTACCAAACAGAAACTGAACTCGAAGATACTTCAGGATGAGATTGTGAAGAAAGTC 290
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 256 AGTCTTACCAAACAGAAACTGGACTCGAAGATACTTCAGGATGAGATTGTGAAGAAAGTC 315
Query 291 AACCAAAATCCAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACT 350
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 AACGAAAACCCAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACT 375
Query 351 GTTGCAGAGTTTAAGCGCCTTCTCGGTGTTAAACCAACACCGAAGAAGCATTTCTTAGGT 410
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 376 GTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAGAAGCATTTCTTAGGT 435
Query 411 GTTCCTGTTGTAAGCCATGATCCATCTTTGAAGCTACCTAAAGCTTTTGATGCTAGAACT 470
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 GTTCCTATTGTGAGCCATGATCCATCTTTGAAGCTACCTAAAGCTTTTGATGCTAGAACT 495
Query 471 GCTTGGCCACAATGCACTAGTATTGGAAAGATCTTAGATCAGGGACATTGTGGTTCTTGC 530
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 496 GCTTGGCCACAGTGCACTAGTATTGGAAACATCTTAGATCAGGGACATTGTGGTTCTTGC 555
Query 531 TGGGCATTTGGTGCTGTTGAATCACTATCTGATAGATTCTGTATCCAATTTGGCATGAAC 590
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 556 TGGGCATTTGGTGCTGTTGAATCACTATCAGATAGATTCTGTATCCAATTTGGCATGAAC 615
Query 591 ATTTCTCTATCAGTTAATGATCTTCTAGCTTGTTGCGGATTCCGTTGTGGTGATGGTTGT 650
|||||| ||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 616 ATTTCTTTATCAGTAAATGATCTCCTAGCTTGTTGTGGATTCCGTTGTGGTGATGGTTGT 675
Query 651 GACGGTGGCTACCCAATTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTAACCGAA 710
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 676 GACGGTGGCTATCCAATTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAA 735
Query 711 GAGTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGTGAACCGGCATAT 770
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 736 GAGTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCGGCATAT 795
Query 771 CCTACACCGAGATGTTTGAGGAAATGCGTTAGCGACAACAAACTATGGAGCGAGTCGAAG 830
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 CCTACACCGAAATGTTCGAGGAAATGCGTTAGCGACAACAAACTATGGAGCGAGTCGAAG 855
Query 831 CATTACAGTGTCAGTACATACACTGTTAATTCTAGTCCACAAGATATCATGGCAGAGGTT 890
||||||||||| |||||||||||||| || |||| |||||||||||||||||||||||||
Sbjct 856 CATTACAGTGTTAGTACATACACTGTGAAATCTAATCCACAAGATATCATGGCAGAGGTT 915
Query 891 TATAAGAATGGACCTGTTGAAGTCTCTTTTACTGTTTATGAGGATTTTGCTCATTACAAA 950
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 916 TATAAGAATGGACCTGTTGAAGTCTCTTTTACCGTTTATGAGGATTTTGCTCATTACAAA 975
Query 951 TCTGGAGTCTATAAGCACATAACAGGATCTAACATTGGAGGTCATGCTGTTAAACTTATT 1010
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 976 TCTGGAGTCTATAAGCACATAACAGGTTCTAACATTGGAGGTCATGCTGTTAAACTTATT 1035
Query 1011 GGTTGGGGAACTAGCAACGAAGGCGAAGATTATTGGTTGATGGCAAATCAATGGAACAGA 1070
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1036 GGTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGGTTGATGGCAAATCAATGGAACAGA 1095
Query 1071 GGCTGGGGTGATGATGGTTATTTCATGATAAGGAGAGGAACTAATGAATGTGGAATTGAA 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 GGCTGGGGTGATGATGGTTATTTCATGATAAGGAGAGGAACTAATGAATGTGGAATTGAA 1155
Query 1131 GATGAACCAGTGGCTGGTTTGCCTTCAAGCAGGAATGTGTTTAAGGTTGATACCGGTTCG 1190
||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1156 GATGAACCAGTAGCTGGTTTGCCTTCAAGCAAGAATGTGTTTAGGGTTGATACCGGTTCG 1215
Query 1191 AATGATCTTCCGGTTGCGTCGGTTTAAGATCAAAGATGGAAATGTTGCATCGGTTTAATA 1250
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 AATGATCTTCCGGTTGCATCGGTTTAAGATCAAAGATGGAAATGTTGCATCGGTTTAATA 1275
Query 1251 TCGAAGATGAAAAGTTGTTTGTAAGATATAT--GTTATGGTTGTTGTTTGCAGTAAAAGA 1308
|| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1276 TCAAAGATGAAAAGTTGTTTGTAAGATATATATGTTATGGTTGTTGTTTCCAGTAAAAGA 1335
Query 1309 ATCCGGTGACTGGAAATTGTTTTCTGGTTGGCTGTGAAAATGTTATACAAATAA 1362
|||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 TTCCGGTGACTAGAAATTGTTTTCTGGTTGGCTGTGAAAATGTTATACAAATAA 1389
> AT1G02305.1 | Symbols: | Cysteine proteinases superfamily protein
| chr1:455688-458164 FORWARD LENGTH=1407
Length=1407
Score = 857 bits (464), Expect = 0.0
Identities = 811/979 (83%), Gaps = 21/979 (2%)
Strand=Plus/Plus
Query 210 TTGAAGGGTATAGCAGCAGAAAATCTTACCAAACAGAAACTGAACTCGA-AGATACTTCA 268
||| ||||||| ||||| ||||||||| |||| |||||||||| ||| | ||| |||||
Sbjct 210 TTGCAGGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTC-ATGGATTCTTCA 268
Query 269 GGATGAGATTGTGAAGAAAGTCAACCAAAATCCAAACGCTGGATGGAAAGCTGCTATAAA 328
| |||||||||| ||| ||||||| | |||||||||||||||||||||||| || | ||
Sbjct 269 GAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCTTCTTTCAA 328
Query 329 TGATCGATTTTCAAACGCCACTGTTGCAGAGTTTAAGCGCCTTCTCGGTGTTAAACCAAC 388
|||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 329 TGATCGGTTTGCAAACGCCACTGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAAC 388
Query 389 ACCGAAGAAGCA-TTTCTTAGGTGTTCCTGTTGTAAGCCATGATCCATCTTTGAAGCTAC 447
||| |||| | | ||| || ||||| ||| |||||||||||||| |||||||||||| |
Sbjct 389 ACCAAAGACGGAATTT-TTGGGTGTGCCTATTGTAAGCCATGATATATCTTTGAAGCTTC 447
Query 448 CTAAAGCTTTTGATGCTAGAACTGCTTGGCCACAATGCACTAGTATTGGAAAGATCTTAG 507
| |||| |||||||||||||| |||||| |||| ||||| |||||||||| ||||||||
Sbjct 448 CAAAAGAATTTGATGCTAGAACCGCTTGGTCACAGTGCACCAGTATTGGAAGGATCTTAG 507
Query 508 ATCAGGGACATTGTGGTTCTTGCTGGGCATTTGGTGCTGTTGAATCACTATCTGATAGAT 567
||||||| || ||||||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 508 ATCAGGGTCACTGTGGTTCTTGCTGGGCCTTTGGTGCTGTTGAATCACTGTCTGACAGAT 567
Query 568 TCTGTATCCAATTTGGCATGAACATTTCTCTATCAGTTAATGATCTTCTAGCTTGTTGCG 627
|||| ||| ||| | |||||| ||||| |||| || ||||||||| |||| ||||| |
Sbjct 568 TCTGCATCAAATATAACATGAATGTTTCTTTATCTGTCAATGATCTTTTAGCATGTTGTG 627
Query 628 GATTCCGTTGTGGTGATGGTTGTGACGGTGGCTACCCAATTGCTGCTTGGCAATACTTTT 687
|||||| ||| ||| | |||||| | ||||| |||||||||||||| |||| ||||||
Sbjct 628 GATTCCTTTGCGGTCAAGGTTGTAATGGTGGATACCCAATTGCTGCGTGGCGGTACTTTA 687
Query 688 CGTAT-AGCGGTGTTGTAACCGAAGAGTGTGATCCATACTTTGATAATACCGGATGCTCT 746
| | | |||||| || || |||||||||||||||||||| || ||||| || |||||
Sbjct 688 AGCACCA-CGGTGTAGTCACTGAAGAGTGTGATCCATACTTCGACAATACTGGTTGCTCG 746
Query 747 CACCCGGGTTGTGAACCGGCATATCCTACACCGAGATGTTTGAGGAAATGCGTTAGCG-A 805
|||||||| |||||||| || || |||||||| | |||| |||||||| ||||||| |
Sbjct 747 CACCCGGGATGTGAACCCGCTTACCCTACACCAAAATGTGCAAGGAAATGTGTTAGCGGA 806
Query 806 CAACAAACTATGGAGCGAGTCGAAGCATTACAGTGTCAGTACATACACTGTTA-AT-TCT 863
||| | || ||| | || || || ||||| |||| ||| | |||| || | || ||
Sbjct 807 -AACCAGCTTTGGCGTGAATCAAAACATTATGGTGTTAGTGCGTACAAGGTCAGATCTC- 864
Query 864 AGTCCACAAGATATCATGGCAGAGGTTTATAAGAATGGACCTGTTGAAGTCT-CTTTTAC 922
| || | || || |||||||| ||||| || |||||||||||||| || | | || ||
Sbjct 865 AC-CCTGATGACATTATGGCAGAAGTTTACAAAAATGGACCTGTTGAGGT-TGCCTTCAC 922
Query 923 TGTTTATGAGGATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGG-ATCTA 981
|||||| ||||| ||||| ||||||||||||||||| || |||||||||||||| | |||
Sbjct 923 TGTTTACGAGGACTTTGCGCATTACAAATCTGGAGTGTACAAGCACATAACAGGTA-CTA 981
Query 982 ACATTGGAGGTCATGCTGTTAAACTTATTGGTTGGGGAACTAGCA-ACGAAGGCGAAGAT 1040
||||||||||||||||||||||||||||||| ||||||||| | | || || ||||||
Sbjct 982 ACATTGGAGGTCATGCTGTTAAACTTATTGGCTGGGGAACTT-CTGATGACGGTGAAGAT 1040
Query 1041 TATTGGTTGATGGCAAATCAATGGAACAGAGGCTGGGGTGATGATGGTTATTTCATGATA 1100
||||||||| | ||||||||||||||| || |||||||||||||||| || |||| |||
Sbjct 1041 TATTGGTTGCTTGCAAATCAATGGAACCGAAGCTGGGGTGATGATGGGTACTTCAAGATC 1100
Query 1101 AGGAGAGGAACTAATGAATGTGGAATTGAAGATGAACCAGTGGCTGGTTTGCCTTCA-AG 1159
||||||||||| || |||||||| |||||| ||| || |||||||| |||||| |
Sbjct 1101 AGGAGAGGAACAAACGAATGTGGCATTGAACATGGTGTTGTAGCTGGTTTACCTTCAGA- 1159
Query 1160 CAGGAATGT-GTTTAAGGT 1177
|||||| || ||| |||||
Sbjct 1160 CAGGAACGTAGTTAAAGGT 1178
> AT1G02300.1 | Symbols: | Cysteine proteinases superfamily protein
| chr1:453288-455463 FORWARD LENGTH=1227
Length=1227
Score = 473 bits (256), Expect = 2e-132
Identities = 561/707 (79%), Gaps = 26/707 (4%)
Strand=Plus/Plus
Query 512 GGGACATTGTGGTTCTTGCTGGGCATTTGGTGCTGTTGAATCACTATCTGATAGATTCTG 571
||| ||||||||||||||||||||||||||||||||||||||||| || || || |||||
Sbjct 435 GGGTCATTGTGGTTCTTGCTGGGCATTTGGTGCTGTTGAATCACTGTCCGACAGGTTCTG 494
Query 572 TATCCAATTTGGCATGAACATTTCTCT-ATCAGTTAATGATCTTC-TAGCTTGTTGCGGA 629
||| ||| | | |||| |||| || ||| | |||||| | | |||| ||||| |||
Sbjct 495 CATCAAATATAACTTGAATGTTTC-CTTATCTGCCAATGATGT-CATAGCATGTTGTGGA 552
Query 630 TTCCGTTGTGGTGATGGTTGTGACGGTGGCTACCCAATTGCTGCTTGGCAATACTTTTCG 689
|| | ||| ||| ||||||| | ||||| | |||||| | ||| ||| |||||| |
Sbjct 553 TTACTTTGCGGTTTTGGTTGTAATGGTGGTTTCCCAATGGGTGCATGGTTGTACTTTAAG 612
Query 690 TAT-AGCGGTGTTGTAACCGAAGAGTGTGATCCATACTTTGATAATACCGGATGCTCTCA 748
|| | |||||| |||||| |||||||||||||||||||||| ||||| || ||||||||
Sbjct 613 TACCA-CGGTGTAGTAACCCAAGAGTGTGATCCATACTTTGACAATACTGGTTGCTCTCA 671
Query 749 CCCGGGTTGTGAACCGGCATATCCTACACCGAGATGTTTGAGGAAATGCGTTAGC-GACA 807
|||||| |||||||| | || |||||||| | |||| ||||||||| || ||| || |
Sbjct 672 CCCGGGATGTGAACCCACTTACCCTACACCAAAATGTGAGAGGAAATGTGTAAGCAGA-A 730
Query 808 ACAAACTATGGAGCGAGTCGAAGCATTACAGTGTCAGTACATACACTGTTAATTCTAGTC 867
|| | |||||| | || || || || || ||||| | |||||| | ||| || | |
Sbjct 731 ACCAGCTATGGGGTGAATCAAAACACTATGGTGTCGGCGCATACAGAATCAATCCT-GAC 789
Query 868 CA-CAAGATATCATGGCAGAGGTTTATAAGAATGGACCTGTTGAAGTCT-CTTTTACTGT 925
| ||||| || ||||| |||||||| |||||||||||||| || || | ||||||| ||
Sbjct 790 CCTCAAGACATTATGGCTGAGGTTTACAAGAATGGACCTGTCGAGGT-TGCTTTTACCGT 848
Query 926 TTATGAGGATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGG-ATCTAACA 984
||| ||||| ||||| ||||||||||| ||||| || ||| ||||||| || | |||| |
Sbjct 849 TTACGAGGACTTTGCACATTACAAATCAGGAGTATACAAGTACATAACGGGTA-CTAAGA 907
Query 985 TTGGAGGTCATGCTGTTAAACTTATTGGTTGGGGAACTAGCA-ACGAAGGCGAAGATTAT 1043
||||||||||||| ||||| || ||||| ||||||||| | | || ||||||||||||
Sbjct 908 TTGGAGGTCATGCAGTTAAGCTCATTGGCTGGGGAACTT-CTGATGACGGCGAAGATTAT 966
Query 1044 TGGTTGATGGCAAATCAATGGAACAGAGGCTGGGGTGATGATGGTTATTTCATGATAAGG 1103
|||||| | ||||||||||||||| || ||||||||||||||||||| |||| ||| |||
Sbjct 967 TGGTTGCTTGCAAATCAATGGAACCGAAGCTGGGGTGATGATGGTTACTTCAAGATCAGG 1026
Query 1104 AGAGGAACTAATGAATGTGGAATTGAAGATGAACCA-GTGGCTGGTTTGCCTTCA-AGCA 1161
|||||||| || |||||||| |||||| | || || |||||||| |||||| || |
Sbjct 1027 AGAGGAACGAACGAATGTGGCATTGAACA-GAGTGTTGTAGCTGGTTTACCTTCAGAGAA 1085
Query 1162 GGAATGTGTTTAA-GGTTGAT-ACCGGTTC-GAATGATCTTCCGGTT 1205
| || || ||||| ||| || ||| ||| || |||||||| ||||
Sbjct 1086 G-AACGTATTTAAAGGT--ATTACCACTTCAGA-TGATCTTCTGGTT 1128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67369131390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5