BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490418
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01600.1 | Symbols: | GRAM domain family protein | chr4:693... 1158 0.0
> AT4G01600.1 | Symbols: | GRAM domain family protein | chr4:693181-694340
FORWARD LENGTH=752
Length=752
Score = 1158 bits (627), Expect = 0.0
Identities = 701/737 (95%), Gaps = 4/737 (1%)
Strand=Plus/Plus
Query 1 CATCACCATTATGTCTACTAGCATGAGTCCGCAATACAAGGATGTGAACGATAAATTAGA 60
||||| ||||| ||||| || |||| |||| |||||||| || |||||||||||||||||
Sbjct 8 CATCATCATTAGGTCTAATATCATGCGTCCACAATACAAAGACGTGAACGATAAATTAGA 67
Query 61 CTCGACGGCTAAGCACAAAACCAACAGCCATGGCGGTCGTTATAG-TAATCCTTACGTCC 119
||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 68 CTCGACGGCCAAGCACAAAACCAACAGCCATGGCGGTCGTTAT-GATAATCCTTACGTCC 126
Query 120 ACATTACTACTCCCACATCAGCTTCTGATAAGAGGTCGAAGGATAAGGTTCTTGAGGTGT 179
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 ACATTACTAGTCCCACATCAGCTTCTGATAAGAGGTCGAAGGATAAGGTTCTTGAGGTGT 186
Query 180 TGAATCGGTGTGGGAAGAAAGTAGAGGACGTTACTCGCAAAGCGGAAGCTTTAGCT-AGC 238
||||||| |||||||||||||||||||||| |||||||||||||||||| |||| | |
Sbjct 187 TGAATCGCTGTGGGAAGAAAGTAGAGGACGCTACTCGCAAAGCGGAAGCATTAG-TCGGA 245
Query 239 GGTTTAAAAGACCACCTGAAGTTTAGTCCTAGCATAAGTGATGCAGCAATGGCTAGGCTT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 GGTTTAAAAGACCACCTGAAGTTTAGTCCTAGCATAAGTGATGCAGCAATGGCTAGGCTT 305
Query 299 TCTCAAGGCACTAAAATGATCGTTGAAGGAGGCCCAGAGAGAGTGTTTCAACGAGAGTTT 358
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 306 TCTCAAGGCACTAAGATGATCGTTGAAGGAGGACCAGAGAGAGTGTTTCAACGAGAGTTT 365
Query 359 GATGTTTTAGCTGCAGAGATACTTTTAGATTCGTTTGTTTGCTACATATCGACTACTTCG 418
| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 366 GGTGTTTTAGCTGTAGAGAAACTTTTAGATTCGTTTGTTTGCTACATATCGACTACTTCG 425
Query 419 GGACCAGTGACCGGAGTGATATACATTTCCAACAGAAGAATCGCTTTTTGTAGCGACTAT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 GGACCAGTGACCGGAGTGATATACATTTCCAACAGAAGAATCGCTTTTTGTAGCGACTAT 485
Query 479 GCCATTCGTCTTCCTTCTTCTGTCGGTGGAAACGGTGTTGCGGCATACTACAAGGTGGTG 538
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 486 GCCATTCGTCTTCCTTCTTCTGCCGGTGGAAACGGTGTTGCGGCATATTACAAGGTGGTG 545
Query 539 ATGGAGTGGGAGAAGATACGTAGCATTAGTTCATCAACGAACGTGTTGAAGCCAAGTCAA 598
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 546 ATGGAGTGGGAGAAGATAAGTAGCATTAGTTCATCAACGAACGTGTTGAAGCCAAGTGAG 605
Query 599 AGGTATGTGCATATGGTGACACAAGATGGGTTTGAGTTTTGGTTCATGGGCTTTGTCTCC 658
|| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 606 AGATACGTGCATATGGTGACACGAGATGGGTTTGAGTTTTGGTTCATGGGCTTTGTCTCC 665
Query 659 TACATCGATGCTTTCAATTGTCTCAACAAAGCTCTCCTTAATTCCCGTTGTGGTCGTGCC 718
|||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||
Sbjct 666 TACATCGATGCTTTCAATTGTCTCAACAAAGCTCTCCTCAATTCCCGTTGTAATCATGCC 725
Query 719 ATGTAATCAAATTCTAA 735
|||||||||||||||||
Sbjct 726 ATGTAATCAAATTCTAA 742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35666244370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5