BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490419
Length=695
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01575.1 | Symbols: | serine protease inhibitor, Kazal-type... 861 0.0
> AT4G01575.1 | Symbols: | serine protease inhibitor, Kazal-type
family protein | chr4:681862-682601 REVERSE LENGTH=740
Length=740
Score = 861 bits (466), Expect = 0.0
Identities = 650/730 (89%), Gaps = 47/730 (6%)
Strand=Plus/Plus
Query 1 CTTTCAGGCAAAGAGAGGAAACAACGTTTCTTCTTCTCAGATTCTTTACC-TTCTTAAGG 59
|||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1 CTTTCAGGAAAAGAGAGGAAACAACGTTTCGTCTTCTCAGATTCTTTACCTTTCTTAAGG 60
Query 60 CAAAAA-CCCCAAAGAGAAAAGATAAAAATCTCGCATTCAGATTTTAGGGTTTCTGACAA 118
||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 -AAAAATCCCAAAAGAGAGAAGATAAAAATCTCGCATTCAGATTTTAGGGTTTCTGACAA 119
Query 119 ATTCTCCGGCGAAATTCAAGAT-CTAAACTTCGGCAATGTCGACGATTTCGCCGTCATTG 177
|||||||| |||||||||||| | || | |||||||||||||| || |||||||||||
Sbjct 120 ATTCTCCGATGAAATTCAAGATCCGAATC-TCGGCAATGTCGACAATCTCGCCGTCATTA 178
Query 178 GCCGTAATTTCGTTTCTTTTTCTGACTCTTCTGAATCTATCTTTGGTTATCGCTGATCCT 237
||||||||| ||||||||||||||| ||||||||||||||||| |||| |||||||||||
Sbjct 179 GCCGTAATTGCGTTTCTTTTTCTGATTCTTCTGAATCTATCTTCGGTTTTCGCTGATCCT 238
Query 238 TCGACGGAGATTGTTAAAGGAGGAGA-GATTAGGTTACCTTCGGAGAAGATCGACGGTGa 296
|||||||| | | |||| |||| |||||||||||||||||||||||| |||||||
Sbjct 239 TCGACGGA-A--G---GAGGA-GAGATTATTAGGTTACCTTCGGAGAAGATCAACGGTGA 291
Query 297 aaaaaaCAGAGGCGAATTTTGTGAAGGAATTGCTAAACCGGCTTCGTGTCCGGTTCAGTG 356
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 292 AAAAAACAGAGGCGAATTCTGTGAAGGAATTGCTAAACCGGCTTCGTGTCCGGTTCAGTG 351
Query 357 TTTCAGGCCTGATCCGGTTTGCGGTGAGGACAGCGTTACTTACTGGTGCGGTTGTGCAGA 416
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 352 TTTCAGGCCTGATCCGGTTTGCGGTGAAGACAGCGTTACTTACTGGTGCGGTTGTGCAGA 411
Query 417 TGCTTTGTGCCATGGTGTTCGTGTTGTTAAACAAGGAGCTTGTGATGTTGGTAATGGCGT 476
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 412 TGCTTTGTGCCATGGTGTTCGTGTTGTGAAACAAGGAGCTTGTGATGTTGGTAATGGTGT 471
Query 477 TGGTTTGTCTGTACCTGGACAAGCTCTGCTTTTGATACACATTGTCTGGATGATGCTTCT 536
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TGGTTTGTCTGTTCCTGGACAAGCTCTGCTTTTGATACACATTGTCTGGATGATGCTTCT 531
Query 537 TGGGTTTTCTATTCTCTTTGGCCTCTTTTGATTT-------AA--------A--CAA--C 577
||||||||||||||||||||| |||||||||||| || | ||| |
Sbjct 532 TGGGTTTTCTATTCTCTTTGGGCTCTTTTGATTTTGGTTCTAATTTCTCTGAATCAAAAC 591
Query 578 A---TATAGA-GATTGTTTAGGTTTTCTGATTGCGACTGATGAATCTTTTT-GTTTATAA 632
| |||||| |||||||||||||||| |||||| | ||| |||||||||| |||||||
Sbjct 592 AACATATAGAAGATTGTTTAGGTTTTCAGATTGCAAATGACGAATCTTTTTTGTTTATAC 651
Query 633 TCTT-TTT----CTTTAT-T-GCTCTGTATTTGAAAAATTACATTAAAACTATGAGGAAG 685
|||| ||| |||||| | |||||||||| | | |||||||||||||||||||||
Sbjct 652 TCTTCTTTTTTTCTTTATATTGCTCTGTATTC-ATA--TTACATTAAAACTATGAGGAAA 708
Query 686 TATCATTATT 695
||| ||||||
Sbjct 709 TATTATTATT 718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33656878490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5