BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490425 Length=808 Score E Sequences producing significant alignments: (Bits) Value AT4G01510.1 | Symbols: ARV2 | Arv1-like protein | chr4:642733-6... 1138 0.0 > AT4G01510.1 | Symbols: ARV2 | Arv1-like protein | chr4:642733-644336 FORWARD LENGTH=855 Length=855 Score = 1138 bits (616), Expect = 0.0 Identities = 739/796 (93%), Gaps = 17/796 (2%) Strand=Plus/Plus Query 1 AGAGAGATGGCGAGAGAGAAGAAGACGTGTGTAGAGTGTGGGCATAAGGTTAAGTCCTTG 60 |||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||| Sbjct 17 AGAGAGATGGCGAGAGAGAAGAAGACGTGTGTAGAGTGTGGGCACAAGGTTAAATCTTTG 76 Query 61 TTCATTCAATACTCTCCTGGCAATTTTCGCCTCATGAAATGCGAGAATTGCGAGGAAGTA 120 ||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||| Sbjct 77 TTCATACAATACTCTCCTGGAAATTTTCGTCTCATGAAATGCGAGAATTGCGAAGAAGTA 136 Query 121 GCAGACGAATACGTCGAGTGTGAGCTATTGATTATTTTCATCGACTTGATTCTTCACAAA 180 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 137 GCAGACGAATATGTCGAGTGTGAGCTATTGATTATTTTCATCGACTTGATTCTTCACAAA 196 Query 181 ACAAAGGCTTATAGACACTTACTTTACAATG-TGTTTAATCAAGAATCTGTTAATATTCA 239 ||||||||||||||||||||||| ||||||| || ||||||||||||||| ||| |||| Sbjct 197 ACAAAGGCTTATAGACACTTACTCTACAATGTTG-TTAATCAAGAATCTGCAAATGTTCA 255 Query 240 GCATCTGTTGTGGAAATTGGTCTTGGCTTATCTTCTTCTAGATACTTATAGAAGCTTGCT 299 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 256 GCATCTATTATGGAAATTGGTCTTGGCTTATCTTCTTCTAGATACTTATAGAAGCTTGCT 315 Query 300 ACTGCGAAGAACCAATGACCAATCAAATGTGTCGATGAGCTTTGTTCTTGAATCTCTAGA 359 |||| |||||||||||||| |||||||||||| ||||||||| || ||||||||||||| Sbjct 316 ACTGAGAAGAACCAATGACGGATCAAATGTGTCTATGAGCTTTCTTTTTGAATCTCTAGA 375 Query 360 GGTTCTGGTCAATGTACTATCTGCGAATTTTGCTTTTGTTTTATCATTTGCACTTGCGGC 419 |||||||||||||||||||||||||||||| || |||||||| ||||||||| |||| || Sbjct 376 GGTTCTGGTCAATGTACTATCTGCGAATTTCGCATTTGTTTTCTCATTTGCATTTGCTGC 435 Query 420 TAAGATGATGCTGGTTATGTCAAGAGGAAAAGAGATTCTTTTGGGGGTATTAATCTCGAG 479 |||| |||||||||||||| ||||||| |||||||||||||| | | ||||||||||| Sbjct 436 TAAGTTGATGCTGGTTATGCCAAGAGGGAAAGAGATTCTTTTAACGATCTTAATCTCGAG 495 Query 480 TTACGTCAAGATCTTTCTATTTGCTATGCCGGTCTGGGAATTCCCGGTTTCTGTGATCTT 539 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 496 TTACGTCAAGATCTTTCTATTTGCTATGCCGGTCTGGGAATTCCCAGTTTCTGTGATCTT 555 Query 540 CATCGTAGATATGCTCGTTTTAACATCAAACGCAGTTGCTCTTAAAGTGATGACTGAATC 599 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 556 CATCGTAGATATGCTCGTTTTAACCTCAAACGCAGTTGCTCTTAAAGTGATGACTGAATC 615 Query 600 AGCAACGAGCAGATGCTTAGCAGTGTGTTTCATTGCACACTCAATTAGATTCTTGGTGGA 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 616 AGCAACGAGCAGATGCTTAGCAGTGTGTTTCATTGCACACTCAATTAGATTCTTGGTGGA 675 Query 660 TCAGATCTCTGGACACTTAGGATCTGTCTTGTAATCT--------AA----CTTGTGATC 707 |||||||||||||||||||||||||||| |||||||| || ||||||||| Sbjct 676 TCAGATCTCTGGACACTTAGGATCTGTCATGTAATCTTCTCTTGCAAGGAACTTGTGATC 735 Query 708 TCATAAt-tttttt--AGGGTCTTTAAACTCTTTTGTCTAAATCACCTATGATAATATGT 764 ||||||| |||||| |||||| ||||||||| ||||||||||||| | ||||||||||| Sbjct 736 TCATAATATTTTTTTTAGGGTCGTTAAACTCTCTTGTCTAAATCACTTGTGATAATATGT 795 Query 765 TTAGAAAAATAAATGT 780 |||||||||||||||| Sbjct 796 TTAGAAAAATAAATGT 811 Score = 54.7 bits (29), Expect = 1e-06 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 780 TTTTTGTTCAATCCAACTCCTTTTGGGTG 808 ||||||||||||||||||||||||||||| Sbjct 827 TTTTTGTTCAATCCAACTCCTTTTGGGTG 855 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39333337101 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5