BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490425
Length=808
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01510.1 | Symbols: ARV2 | Arv1-like protein | chr4:642733-6... 1138 0.0
> AT4G01510.1 | Symbols: ARV2 | Arv1-like protein | chr4:642733-644336
FORWARD LENGTH=855
Length=855
Score = 1138 bits (616), Expect = 0.0
Identities = 739/796 (93%), Gaps = 17/796 (2%)
Strand=Plus/Plus
Query 1 AGAGAGATGGCGAGAGAGAAGAAGACGTGTGTAGAGTGTGGGCATAAGGTTAAGTCCTTG 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 17 AGAGAGATGGCGAGAGAGAAGAAGACGTGTGTAGAGTGTGGGCACAAGGTTAAATCTTTG 76
Query 61 TTCATTCAATACTCTCCTGGCAATTTTCGCCTCATGAAATGCGAGAATTGCGAGGAAGTA 120
||||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 77 TTCATACAATACTCTCCTGGAAATTTTCGTCTCATGAAATGCGAGAATTGCGAAGAAGTA 136
Query 121 GCAGACGAATACGTCGAGTGTGAGCTATTGATTATTTTCATCGACTTGATTCTTCACAAA 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 GCAGACGAATATGTCGAGTGTGAGCTATTGATTATTTTCATCGACTTGATTCTTCACAAA 196
Query 181 ACAAAGGCTTATAGACACTTACTTTACAATG-TGTTTAATCAAGAATCTGTTAATATTCA 239
||||||||||||||||||||||| ||||||| || ||||||||||||||| ||| ||||
Sbjct 197 ACAAAGGCTTATAGACACTTACTCTACAATGTTG-TTAATCAAGAATCTGCAAATGTTCA 255
Query 240 GCATCTGTTGTGGAAATTGGTCTTGGCTTATCTTCTTCTAGATACTTATAGAAGCTTGCT 299
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 GCATCTATTATGGAAATTGGTCTTGGCTTATCTTCTTCTAGATACTTATAGAAGCTTGCT 315
Query 300 ACTGCGAAGAACCAATGACCAATCAAATGTGTCGATGAGCTTTGTTCTTGAATCTCTAGA 359
|||| |||||||||||||| |||||||||||| ||||||||| || |||||||||||||
Sbjct 316 ACTGAGAAGAACCAATGACGGATCAAATGTGTCTATGAGCTTTCTTTTTGAATCTCTAGA 375
Query 360 GGTTCTGGTCAATGTACTATCTGCGAATTTTGCTTTTGTTTTATCATTTGCACTTGCGGC 419
|||||||||||||||||||||||||||||| || |||||||| ||||||||| |||| ||
Sbjct 376 GGTTCTGGTCAATGTACTATCTGCGAATTTCGCATTTGTTTTCTCATTTGCATTTGCTGC 435
Query 420 TAAGATGATGCTGGTTATGTCAAGAGGAAAAGAGATTCTTTTGGGGGTATTAATCTCGAG 479
|||| |||||||||||||| ||||||| |||||||||||||| | | |||||||||||
Sbjct 436 TAAGTTGATGCTGGTTATGCCAAGAGGGAAAGAGATTCTTTTAACGATCTTAATCTCGAG 495
Query 480 TTACGTCAAGATCTTTCTATTTGCTATGCCGGTCTGGGAATTCCCGGTTTCTGTGATCTT 539
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 496 TTACGTCAAGATCTTTCTATTTGCTATGCCGGTCTGGGAATTCCCAGTTTCTGTGATCTT 555
Query 540 CATCGTAGATATGCTCGTTTTAACATCAAACGCAGTTGCTCTTAAAGTGATGACTGAATC 599
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 556 CATCGTAGATATGCTCGTTTTAACCTCAAACGCAGTTGCTCTTAAAGTGATGACTGAATC 615
Query 600 AGCAACGAGCAGATGCTTAGCAGTGTGTTTCATTGCACACTCAATTAGATTCTTGGTGGA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 AGCAACGAGCAGATGCTTAGCAGTGTGTTTCATTGCACACTCAATTAGATTCTTGGTGGA 675
Query 660 TCAGATCTCTGGACACTTAGGATCTGTCTTGTAATCT--------AA----CTTGTGATC 707
|||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 676 TCAGATCTCTGGACACTTAGGATCTGTCATGTAATCTTCTCTTGCAAGGAACTTGTGATC 735
Query 708 TCATAAt-tttttt--AGGGTCTTTAAACTCTTTTGTCTAAATCACCTATGATAATATGT 764
||||||| |||||| |||||| ||||||||| ||||||||||||| | |||||||||||
Sbjct 736 TCATAATATTTTTTTTAGGGTCGTTAAACTCTCTTGTCTAAATCACTTGTGATAATATGT 795
Query 765 TTAGAAAAATAAATGT 780
||||||||||||||||
Sbjct 796 TTAGAAAAATAAATGT 811
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 780 TTTTTGTTCAATCCAACTCCTTTTGGGTG 808
|||||||||||||||||||||||||||||
Sbjct 827 TTTTTGTTCAATCCAACTCCTTTTGGGTG 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39333337101
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5