BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490426
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01480.1 | Symbols: AtPPa5, PPa5 | pyrophosphorylase 5 | chr... 1548 0.0
AT1G01050.1 | Symbols: AtPPa1, PPa1 | pyrophosphorylase 1 | chr... 686 0.0
> AT4G01480.1 | Symbols: AtPPa5, PPa5 | pyrophosphorylase 5 | chr4:626118-628055
FORWARD LENGTH=1033
Length=1033
Score = 1548 bits (838), Expect = 0.0
Identities = 985/1050 (94%), Gaps = 33/1050 (3%)
Strand=Plus/Plus
Query 1 ACGCGCTTTACTGTTTTCTCTTCCTCTTGTCACTTTTCTTTCTCCATACTTCCCGCAAGA 60
|||||||||||||||||||| || || |||||||||||||||||| |||| ||||||||
Sbjct 1 ACGCGCTTTACTGTTTTCTCATCATC--GTCACTTTTCTTTCTCCACACTTTCCGCAAGA 58
Query 61 TTGTTCTGTTCTGTTCTTGAAACGATTCTAAGATGAATGGACAAGAAGAAGTGAAAACGA 120
||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 59 TTGTTCTGTTC--TTC---AAACGATTCTAAGATGAATGG---AGAAGAAGTGAAAACGA 110
Query 121 ATCAATCTCAGAAGAAGCTTCAGAACCCTACTCCACGTTTAAACGAGAGGATTCTCTCAT 180
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 GTCAACCTCAGAAGAAGCTTCAGAACCCTACTCCACGTTTAAACGAGAGGATTCTCTCAT 170
Query 181 CTTTGTCTAAGAGATCGGTTGCTGCACATCCATGGCATGATCTTGAAATCGGACCTGGAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 CTTTGTCTAAGAGATCGGTTGCTGCACATCCATGGCATGATCTTGAAATCGGACCTGGAG 230
Query 241 CTCCAGTGATTTTCAATGTGGTTATTGAGATCTCAAAGGGGAGCAAAGTCAAATATGAAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 CTCCAGTGATTTTCAATGTGGTTATTGAGATCTCAAAGGGGAGCAAAGTCAAATATGAAC 290
Query 301 TTGACaaaaaaaCTGGACTCATCAAGGTTGATCGGATTCTGTATTCGTCGGTTGTGTATC 360
||||||||||||| || ||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 291 TTGACAAAAAAACAGGTCTCATCAAGGTTGATAGGATTCTTTATTCTTCGGTTGTGTATC 350
Query 361 CTCATAACTACGGTTTTGTCCCCCGCACACTATGTGAAGACAATGACCCTATAGATGTTT 420
|||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 351 CTCACAACTACGGGTTTGTCCCACGCACACTATGTGAAGACAATGACCCTATAGATGTTT 410
Query 421 TAGTTATCATGCAGGAGCCTGTGCTTCCGGGTTGCTTTCTTCGCGCCCGAGCTATTGGTT 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 411 TAGTTATCATGCAGGAGCCTGTGCTTCCGGGTTGTTTTCTTCGCGCCCGAGCTATTGGTT 470
Query 481 TAATGCCTATGATTGACCAGGGTGAAAAAGATGACAAGATCATTGCAGTTTGTGTTGATG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TAATGCCTATGATTGACCAGGGTGAAAAAGATGACAAGATCATTGCAGTTTGTGTTGATG 530
Query 541 ATCCTGAGTATAAGCATATCACTAACATCAATGAACTTCCTCCTCATCGTCTCTCTGAAA 600
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 531 ATCCTGAGTATAAGCACATCACTAACATCAATGAACTTCCTCCTCATCGTCTTTCTGAAA 590
Query 601 TCCGTCGATTCTTTGAAGATTACAAGAAGAATGAGAACAAAGAAGTTGCAGTGAATGATT 660
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 591 TCCGTCGATTCTTTGAAGACTACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAATGATT 650
Query 661 TTCTACAACCTGGTCCTGCTATTGAAGCCATTCAATACTCAATGGACCTTTACGCTGAGT 720
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 651 TTCTACAACCTGGTCCTGCTATTGAAGCCATTCAGTACTCAATGGATCTTTACGCTGAGT 710
Query 721 ACATTCTTCACACCCTGAGGAGATAGATaaaaa-aaGGACTTCTTCAAGAACATTCCTGC 779
|||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||
Sbjct 711 ACATTCTTCACACCCTGAGGAGATAGATGAAAAGAAG-ACTTCTTCAAGAACATTCCTGC 769
Query 780 CAATTTTTGC-TCTGCAGTCTCAGATTTTGTTGCAGTGAATATGCAAAAGAACAAGAACT 838
||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||| |
Sbjct 770 CAATTTTTGGGTCTGCAATCTCAGATTCTGTTGCAGTGAATATGCAAAAGAACAAGAATT 829
Query 839 TGTCTGATATTTGGATTTTT---GAAATAAGCACGTGTCTCATATTTGGCTTTAACGATT 895
||||| |||||||||||||| ||| |||||||||||||||||||||||||| ||| ||
Sbjct 830 TGTCTTATATTTGGATTTTTTTTGAA-TAAGCACGTGTCTCATATTTGGCTTTGACGCTT 888
Query 896 TC-TTtt-gttgttgttgttgttgATT-TCTTCTGGGGATGTTTTGTCTGAACATTGAGA 952
|| |||| |||||||||||||||| || |||||||||||||||||||||||||||| |||
Sbjct 889 TCCTTTTTGTTGTTGTTGTTGTTG-TTGTCTTCTGGGGATGTTTTGTCTGAACATTAAGA 947
Query 953 GTTTTCTCACTTGTATTTGTAACACTGTCTTTGGATCttttttttAATAATAATTTCAAT 1012
|||| ||||||||||||||| |||||||||||||||| |||||| || |||
Sbjct 948 GTTT--------GTATTTGTAACACTGCCTTTGGATCTTTTTTT-AATAAT--TT-CAAG 995
Query 1013 CTTCGATTTGGTTCCAATGAAACCAGACTT 1042
||||||||||||||||||||||||||||||
Sbjct 996 CTTCGATTTGGTTCCAATGAAACCAGACTT 1025
> AT1G01050.1 | Symbols: AtPPa1, PPa1 | pyrophosphorylase 1 | chr1:31170-33153
REVERSE LENGTH=976
Length=976
Score = 686 bits (371), Expect = 0.0
Identities = 522/595 (88%), Gaps = 10/595 (2%)
Strand=Plus/Plus
Query 151 CTCCACGT-TTAAACGAGAGGATTCTCTCATCTTTGTCTAAG-AGATCGGTTGCTGCACA 208
|||| ||| || |||||||||||||||||||| ||||| ||| ||||| || ||||| ||
Sbjct 169 CTCCTCGTCTT-AACGAGAGGATTCTCTCATCCTTGTC-AAGAAGATCCGTAGCTGCTCA 226
Query 209 TCCATGGCATGATCTTGAAATCGGACCTGGAGCTCCAGTGATTTTCAATGTGGTTATTGA 268
|||||||||||||||||| || ||||||||||||||| |||||||||||||||| ||||
Sbjct 227 TCCATGGCATGATCTTGAGATTGGACCTGGAGCTCCACAGATTTTCAATGTGGTTGTTGA 286
Query 269 GATCTC-AAAGGGGAGCAAAGTCAAATATGAACTTGACaaaaaaaCTGGACTCATCAAGG 327
|||| | ||| || ||||| |||||||| || ||||||||||| || |||||||||||||
Sbjct 287 GATCACTAAA-GGAAGCAAGGTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAGG 345
Query 328 TTGATCGGATTCTGTATTCGTCGGTTGTGTATCCTCATAACTACGGTTTTGTCCCCCGCA 387
||||||| ||||| || || || |||||||| ||||| ||||| |||||||| || ||||
Sbjct 346 TTGATCGTATTCTCTACTCATCAGTTGTGTACCCTCACAACTATGGTTTTGTTCCTCGCA 405
Query 388 CACTATGTGAAGACAATGACCCTATAGATGTTTTAGTTATCATGCAGGAGCCTGTGCTTC 447
|| | ||||||||||||||||| || ||||| ||||| ||||||||||| ||||||||||
Sbjct 406 CATTGTGTGAAGACAATGACCCCATTGATGTCTTAGTCATCATGCAGGAACCTGTGCTTC 465
Query 448 CGGGTTGCTTTCTTCGCGCCCGAGCTATTGGTTTAATGCCTATGATTGACCAGGGTGAAA 507
||||||| ||||| || ||| |||| ||||| ||||||||||||||||||||||||||||
Sbjct 466 CGGGTTGTTTTCTGCGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAGGGTGAAA 525
Query 508 AAGATGACAAGATCATTGCAGTTTGTGTTGATGATCCTGAGTATAAGCA-TATCACTAAC 566
|||||||||||||||||||||| ||||||||||||||||| |||||||| || |||| ||
Sbjct 526 AAGATGACAAGATCATTGCAGTGTGTGTTGATGATCCTGAATATAAGCACTA-CACTGAC 584
Query 567 ATCAATGAACTTCCTCCTCATCGTCTCTCTGAAATCCGTCGATTCTTTGAAGATTACAAG 626
||||| |||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||
Sbjct 585 ATCAAAGAACTTCCTCCTCACCGTCTCTCTGAAATCCGTCGTTTCTTCGAAGACTACAAG 644
Query 627 AAGAATGAGAACAAAGAAGTTGCAGTGAATGATTTTCTACAACCTG-GTCCTGCTATTGA 685
|| || |||||||| ||||||||||||||||||||||| | | ||| ||| ||| ||||
Sbjct 645 AAAAACGAGAACAAGGAAGTTGCAGTGAATGATTTTCTGCCATCTGAGTC-TGCGGTTGA 703
Query 686 AGCCATTCAATACTCAATGGACCTTTACGCTGAGTACATTCTTCACACCCTGAGG 740
||| || || |||||||||||||| || ||||| |||||||| ||||||||||||
Sbjct 704 AGCTATCCAGTACTCAATGGACCTCTATGCTGAATACATTCTCCACACCCTGAGG 758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51088127499
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5