BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490431
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01450.2 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1589 0.0
> AT4G01450.2 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr4:608456-610724 FORWARD LENGTH=1453
Length=1453
Score = 1589 bits (860), Expect = 0.0
Identities = 981/1038 (95%), Gaps = 13/1038 (1%)
Strand=Plus/Plus
Query 3 ACTACTCAAACAAGTTTCT---GAAG-g--agagacagca-g--agagtaaaagctaaga 53
||||||||||||||||||| |||| | ||||| || | | ||||||||||||||||
Sbjct 1 ACTACTCAAACAAGTTTCTGAAGAAGAGACAGAGAGAGAAGGATAGAGTAAAAGCTAAGA 60
Query 54 gagagagcgagactgggagagacaaagagagagagaTCATTTTGGTTATTAATTAATTAA 113
|||||||||||||| |||||| ||||| ||||| ||||||||||||||||| |||||||
Sbjct 61 GAGAGAGCGAGACT--GAGAGAGAAAGAAAGAGATATCATTTTGGTTATTAAGTAATTAA 118
Query 114 CTTATACTAATCATGGGTTTTATCGATGGAAAGTGGGCGCCGATGATCGTCATAATTGTT 173
|||||||||||||||||||||||||||||||||||||| || ||||| ||| ||||||||
Sbjct 119 CTTATACTAATCATGGGTTTTATCGATGGAAAGTGGGCACCAATGATAGTCTTAATTGTT 178
Query 174 ACTAACATGATTGCCGGAATGGTTAACGCTTTGA-TTAAGAAAGTTCTTGATGGAGGCAT 232
||||||||||||| ||||||||||| ||||| | |||||||||||||||||||||||||
Sbjct 179 TCTAACATGATTGCGGGAATGGTTAATGCTTT-AGTTAAGAAAGTTCTTGATGGAGGCAT 237
Query 233 TAATCATATGGTTATTGCTACTTATCGTTTGGGTATTTCTACTCTTTTCCTTCTTCCAAT 292
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 238 CAATCATATGGTTATTGCTACTTATCGTTTGGGTATATCTACTCTTTTCCTTCTTCCAGT 297
Query 293 CGCTTATTTTTGGGAACGGAAAACAAGACCAAAGCTAACCCTAAGCATCTCATGTCAGCT 352
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 298 CGCTTATTTTTGGGAACGGAAAACAAGACCAAAGCTAACTCTAAGCATCTCATGTCAGCT 357
Query 353 TTTCGTCAGTGCCCTTTTTGGGGCGAGCTTGATGCAATATTTCTACCTGCTTGGACTCTC 412
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 358 TTTCGTCAGTGCCCTTTTTGGGGCGAGCTTGATGCAATATTTCTACTTGCTTGGACTGTC 417
Query 413 CTACACGTCTGCAACGTTGGGATCTGCTTTCTGGGCCATAATGCCTTCCCTCACTTTCGT 472
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CTACACGTCTGCAACGCTGGGATCTGCTTTCTGGGCCATAATGCCTTCCCTCACTTTCGT 477
Query 473 TATGGCTTTAATATTTGGGTTCGAAAAGTTAACTTTGAAAACAAAAATAGGATACGGCGT 532
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||
Sbjct 478 TATGGCTTTAATATTTGGGTTCGAAAAGCTAAGTTTGAAAACAAAAATAGGATACGGTGT 537
Query 533 CGTTCTTGGAACTTTAATAAGCTTAGTAGGAGGTTTACTTCTTACTATGTATCAAGGCAT 592
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 538 CGTTCTTGGAACTTTGATAAGCTTAGTAGGAGGTTTACTTCTTACTATGTATCAAGGGAT 597
Query 593 TCCATTAACAAACTCTCAAGAACAAGCAGAAAATCCAAACAACCACACAGGACATGAGAA 652
||||||||||||||||| ||||||||||| |||| |||| ||||||||||||||||||||
Sbjct 598 TCCATTAACAAACTCTCCAGAACAAGCAGCAAATTCAAATAACCACACAGGACATGAGAA 657
Query 653 TTGGATCAAAGGTTGTTTCTTTTTATTGACCGGAGTTATTCTTTTCAGTTCTTGGATGCT 712
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 658 TTGGATCAAAGGTTGTTTCTTTTTATTGACCGGAGTTGTTCTTTTCAGTTCTTGGATGCT 717
Query 713 TATACAAGCCAAGATCAACGTGAATTACCCTTGTCCATACTCGAGTACCGTTATTTTGTC 772
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 718 TATACAAGCCAAGATCAACGTGAAATACCCTTGTCCATACTCGAGTACCGTTATTTTGTC 777
Query 773 GGTCTTTGGTACACTTCAATGCGCCCTTCTTAGTTTAATCAAGACTAGACATTTGGAAGA 832
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 778 GGTCTTTGGTACGCTTCAATGCGCCCTTCTTAGTTTAATTAAGACTAGACATTTGGAAGA 837
Query 833 TTGGATCCTCAGAGACGAGCTAACCATCATCACCGTCATTATAGCGGTAGTGGTTGCACA 892
||||||||| ||||| ||||| ||||||||||||||| ||||||||| ||||||||||||
Sbjct 838 TTGGATCCTTAGAGATGAGCTTACCATCATCACCGTCGTTATAGCGGGAGTGGTTGCACA 897
Query 893 AGGAATGTGTACGGTGGGAATATCATGGTGTATCAAACAACAAGGACCTGTCGTTTCCTC 952
||| |||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 898 AGGTATGTGTACGGTGGGCATGTCGTGGTGTATCAAACAACAAGGACCTGTCGTTTCCTC 957
Query 953 ATCATTTAGTCCTGTCGTGCTTATGTCTGCAACCTTGTTCGATTTCTTGATTCTTCATCG 1012
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 958 ATCATTTAGTCCTGTCGTGCTTATGTCTGCAACCGTGTTCGATTTCTTGATTCTTCATCG 1017
Query 1013 TGTGATTTATTTGGGAAG 1030
|| |||||||||||||||
Sbjct 1018 TGAGATTTATTTGGGAAG 1035
Score = 311 bits (168), Expect = 1e-83
Identities = 226/253 (89%), Gaps = 8/253 (3%)
Strand=Plus/Plus
Query 1017 ATTTATTTGG-GAAGGAGTAAGCAAATAGAAGAGTGTAAGATCATGAAGTTGCCTACTAA 1075
|||| | ||| | |||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1075 ATTTCTATGGAGTAGGAGTAAGCAAATAGTAGAGTGTAAGATCATGAAGTTGCCTACCAA 1134
Query 1076 TACGGTGGAAGAAGAAAAGGAAGAGGAAGGCCGTACAAATTTTAACATGGGCCAGCTTTT 1135
|||||||||||||||||||||||||||||||||||||||| |||||| || || |||||
Sbjct 1135 TACGGTGGAAGAAGAAAAGGAAGAGGAAGGCCGTACAAATGTTAACAACGGTCAACTTTT 1194
Query 1136 GGTTATACCGATGACTCCTTGATCTACTTCCCTAAACACTCTTGTTCAACGAGAAGGAT- 1194
|||||| |||||||||||||||||||||||||||||||| |||||||||| |||| ||
Sbjct 1195 GGTTATTCCGATGACTCCTTGATCTACTTCCCTAAACACGCTTGTTCAACAAGAATCATG 1254
Query 1195 -C-GATATGTCTTCAGAAATT-AAATATGAAGAAGAGAAAAT---GATCGTTTTGATTGT 1248
| |||||||||||| ||| | ||||||||||||||||| || ||||||||| |||||
Sbjct 1255 ACCGATATGTCTTCAAAAAATGAAATATGAAGAAGAGAAGATAACGATCGTTTTCATTGT 1314
Query 1249 TTATTGGACTATT 1261
|||||||||||||
Sbjct 1315 TTATTGGACTATT 1327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61997673075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5