BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490432
Length=1322
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01440.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1851 0.0
> AT4G01440.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr4:596399-598718 FORWARD LENGTH=1436
Length=1436
Score = 1851 bits (1002), Expect = 0.0
Identities = 1231/1336 (92%), Gaps = 38/1336 (3%)
Strand=Plus/Plus
Query 1 CCCCTTAGAGAAACACAAACAGaa-aaaaaaaGGAAGAGAGAGATTAGCTATTAACTTAT 59
||||||||||||||| ||| |||| | ||||| ||||||||||||||| |||||||||||
Sbjct 12 CCCCTTAGAGAAACA-AAA-AGAATACAAAAA-GAAGAGAGAGATTAGTTATTAACTTAT 68
Query 60 TCATAAT-A-CGTAATTAC-T--T-TTT-C------TT-GTTAGTAGTCGACTAGTAAAT 105
||||||| | |||||||| | | ||| | || ||||| ||||||||||| |||
Sbjct 69 TCATAATAAGTGTAATTACTTCGTATTTACTTTTTTTTGGTTAGCAGTCGACTAGT-AAT 127
Query 106 TAATAATGGGTTACTGCGATGGTAAATGGACACCGGTGATTATCATGGTTATGATTAATT 165
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 128 CAATAATGGGTTACTGCGATGGTAAATGGACACCGGTGATTATTATGGTTATGATCAATT 187
Query 166 CGGCGCTGGGTTTAGGTAACGCTTTGGTTAAAAAAGTACTCGATGGTGGTGTTAACCATA 225
| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 188 CAGCGCTGGGTTTAGCTAATGCTTTGGTTAAAAAAGTACTCGATGGTGGTGTTAACCATA 247
Query 226 TGGTTATCGCAACATATCGTCTCGCTATTTCTACCGTATTTTTGGCACCAATCGCATATT 285
|||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||| ||
Sbjct 248 TGGTTATCGCAACATATCGTCTTGCTATTTCAACCCTATTTTTGGCACCAATCGCATTTT 307
Query 286 TTTGGGAACGGAAAACAAGACCGAAACTTACGCTCAACATCATGGTTCAGCTTTTCTTCA 345
|||||||||||||||| ||||||| ||| |||||||||||| ||||||||||||||||||
Sbjct 308 TTTGGGAACGGAAAACGAGACCGACACTAACGCTCAACATCTTGGTTCAGCTTTTCTTCA 367
Query 346 GTGCTCTTGTTGGGGCAAGTTTGACTCAGTATTTCTTCCTATTGGGGCTATCATACACAT 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 GTGCTCTTGTTGGGGCAAGTTTGACTCAGTATTTCTTCCTATTGGGGCTATCATACACAT 427
Query 406 CGGCTACGTTAGCTTGTGCTTTTATTAGCATGACACCTGCGGTTACATTCGTTATGGCTC 465
|||||||||| || |||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 428 CGGCTACGTTGGCATGTGCTTTTATTAGCATGACGCCTGCGATTACATTCGTTATGGCTC 487
Query 466 TAATATTCAGGGTAGAGAAGCTAAACATGAAAAGCAAAGCAGGTATGGGGATGGTGATGG 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TAATATTCAGGGTAGAGAAGCTAAACATGAAAAGCAAAGCAGGTATGGGGATGGTGATGG 547
Query 526 GCGCTTTGATATGCATAGGAGGAGCTTTATTATTCACAATGTACAAAGGTGTTCCCTTGA 585
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 548 GCGCGTTGATATGCATAGGAGGAGCTTTATTATTAACAATGTACAAAGGTGTTCCCTTGA 607
Query 586 CAAAACTTCACAAACTAGAAACCCATCAGTTGATATACAATAAA-ACAGCAATGAAACCC 644
||||||||| |||||||||||||||||||||||| ||||||| || || ||||||||
Sbjct 608 CAAAACTTCGGAAACTAGAAACCCATCAGTTGATAAACAATAACCAC-GCTATGAAACCA 666
Query 645 GAAAATTGGATAATCGGATGCGCACTTCTCTTTGCGGGTAGCAGCTGTTTCGGGTCGTGG 704
|| ||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 667 GAGAATTGGATAATAGGATGCGTACTTCTCTTTGCGGGTAGTAGCTGTTTCGGGTCGTGG 726
Query 705 ATGCTGATACAAGCCAAAGTGAACGAGAAATACCCTTGTCAATACTCGAGTACTGTTGTG 764
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 727 ATGCTGATACAAGCCAAAGTGAACGAGAAATACCCTTGTCAATACTCGAGTACTGTCGTA 786
Query 765 TTATCCTTCTTTGGTACCATCCAATGCGCCCTTCTAAGCCTCATCAAATCTCGAGATATC 824
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 TTATCCTTCTTTGGCACCATCCAATGCGCCCTTCTAAGCCTCATCAAATCTCGAGATATC 846
Query 825 ACGGCTTGGATCCTCACAGATAAACTCGATATCATTACCATTATTTACGCCGGAGCGGTA 884
|||||||||||||||||||||||||| |||||| |||||||| ||||||| ||||| |||
Sbjct 847 ACGGCTTGGATCCTCACAGATAAACTTGATATCGTTACCATTGTTTACGCGGGAGCAGTA 906
Query 885 GCACAAGGAATATGTACGGTGGGAACGTCTTGGTGCATCAGAAAGAGGGGACCTATCTTT 944
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 907 GCACAAGGAATATGTACGGTTGGAACGTCTTGGTGCATCAGAAAGAGAGGACCTATCTTT 966
Query 945 ACTTCTATTTTTACCCCGGTGGCGCTTATATTCGCAACTCTATTTGATTTCTTGATCCTT 1004
|||||||| ||||||||||||| ||||||||| ||||| |||||||||||||||||||||
Sbjct 967 ACTTCTATATTTACCCCGGTGGGGCTTATATTTGCAACACTATTTGATTTCTTGATCCTT 1026
Query 1005 CACCGTCAAATTTTCCTTGGAAGTGTTATCGGATCTGGGGTAGTAATCTTCGGACTATAC 1064
|| |||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1027 CATCGTCAAATTTTCCTAGGAAGTGTTGTCGGATCTGGGGTTGTAATCTTCGGACTATAC 1086
Query 1065 ATATTCTTGTTGGGAAAAGTCAGGCTAATGAAGGAAGAGTGTGAAAAGAAGTTACCTTGT 1124
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1087 ATATTCTTGTTGGGAAAAGTCAGGCTAATGAAAGAAGAGTGTGAAAAGAAGTTACCTTGT 1146
Query 1125 CGTTTTAATGAAGAAGA--AGGA-GAAGATGATGA--A-CAATACAAAAAGGGTCATCTT 1178
|||||||||||||| || | || ||||||||||| | |||||||||||||||||||||
Sbjct 1147 CGTTTTAATGAAGATGATCAAGAAGAAGATGATGATGAACAATACAAAAAGGGTCATCTT 1206
Query 1179 ATGGTTGTTCCAATGACTCCTTGATTTGATTAGACTTTTTTATT---C--CTAC---ACT 1230
||||||||||||||||||||||||| |||||||||||||| || | || | |||
Sbjct 1207 ATGGTTGTTCCAATGACTCCTTGATAAGATTAGACTTTTTTTTTTTTCTTCTTCTTCACT 1266
Query 1231 TCGTACATTATTTTGTAATACCAGTGACCGGTGATCTTT---TGGACTAGTCTAACAACG 1287
||||||||||||| |||| |||| |||||||||| || ||||||||||||||||||
Sbjct 1267 TCGTACATTATTTAGTAAAACCATTGACCGGTGAAAATTACATGGACTAGTCTAACAACG 1326
Query 1288 GCTCAGAAAACTAGTC 1303
| ||| ||||||||||
Sbjct 1327 GTTCAAAAAACTAGTC 1342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65059906320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5