BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490434
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01430.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1884 0.0
> AT4G01430.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr4:585598-588029 FORWARD LENGTH=1390
Length=1390
Score = 1884 bits (1020), Expect = 0.0
Identities = 1161/1227 (95%), Gaps = 18/1227 (1%)
Strand=Plus/Plus
Query 1 GGTTGCCaaacgcaaagaaaaacattcgacattacagaaaa-caaaaactataaaaaaat 59
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1 GGTTGCCAAACACAAAGAAAAACATTCGACATTACAGAAAAGAAAAAACTATAAGAAAAT 60
Query 60 cttaattaataaaataaaataTTCagagagagagagagggagagagattgagagGGATGG 119
||||||||||||||||| |||||||| ||| | | || |||||||| ||||||||||
Sbjct 61 CTTAATTAATAAAATAATATATTCAG-GAG-G-GCGA--GAGAGAGA--GAGAGGGATGA 113
Query 120 TGAAGGAAGAACAATGGGCACCAGTAATAGTAATGTTAATATCAAGTGTTGCAATGGGAT 179
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 114 TGAAGGAAGAACAATGGGCACCAGTGATAGTAATGTTAATATCAAGTGTTGCAATGGGAT 173
Query 180 CAGTGAACGCTCTCGTTAAGAAAGCACTTGATGTTGGTGTTAACCATATGATCTTTGGTG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 CAGTGAACGCTCTCGTTAAGAAAGCACTTGATGTTGGTGTTAACCATATGATCTTTGGTG 233
Query 240 CTTATAGAATGGCTATTTCTGCTCTAATCTTGGTTCCGTTTTCTTTTATTTGGGAGAGGA 299
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 234 CTTATAGAATGGCTATTTCTGCTCTAATCTTGGTTCCGTTTTCTTATATTTGGGAGAGGA 293
Query 300 AAACAAGGCCACAGCTAACGCTCATGCTTTTGTGCGAACATTTCATCAGCGGATTACTTG 359
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 294 AAACAAGGCCACAACTAACGTTCATGCTTTTGTGCGAACATTTCATCAGCGGATTACTTG 353
Query 360 GGGCAAGTTTGATGCAATTTTTCTTTTTACTTGGACTATCGTACACGTCAGCAACTGTTT 419
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 354 GGGCAAGTTTGATGCAATTTTTCTTTTTACTTGGGCTTTCGTACACGTCAGCAACTGTTT 413
Query 420 CGATGGCTCTAGTTAGCATGTTACCTGCTATCACCTTTGCGTTAGCCCTTATTTTCAGGA 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 414 CGATGGCTCTAGTTAGCATGTTACCTGCTATCACCTTTGCGTTAGCCCTTATTTTCCGGA 473
Query 480 TAGAGAATGCGCAAAACCTGAAGAGCAAAGCAGGTGTTCTCAAAGTAATGGGAACCCTAA 539
||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 474 TAGAGAATGCGCAAAACCTAAAGAGCAAAGCAGGCGTGCTCAAAGTAATGGGAACCCTAA 533
Query 540 TTTGCATAATGGGAGCTATGTTATTGACATTTTACAAAGGCCCAGAGTTATCAAACCCGC 599
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 534 TTTGCATAATGGGAGCAATGTTGTTGACATTTTACAAAGGCCCAGAGTTATCAAACCCTC 593
Query 600 ATTCTCATCCACGAGCTCTTCACAACAACAACACGTTACATAACAACGGTCACGACCAAA 659
|||||||||||| ||||| |||||||||||||| | |||||| |||||||||||||
Sbjct 594 ATTCTCATCCACAAGCTCGTCACAACAACAACA----A--TAACAATGGTCACGACCAAA 647
Query 660 CAAAGAAATGGCTTCTAGGCTGTCTTTATTT-GATCATTGGGACAGTGTTGTTGTCTCTA 718
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 648 CAAAGAAATGGCTTCTAGGCTGTCTTTATTTAG-TCATTGGGACAGTGTTGTTGTCTCTA 706
Query 719 TGGATGTTGTTTCAAGGGAAATTAAGCTTTAAGTATCCTGGAAATAAATACTCAAGCACT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 TGGATGTTGTTTCAAGGGAAATTAAGCTTTAAGTATCCTGGAAATAAATACTCAAGCACT 766
Query 779 TGTCTCATGTCAGTCTTTGCTTCATTTCAATGTGCTATTTTGAGTCTTTACAAGAGTAGA 838
||||||||||||||||| || ||||||||||||||||||||||||||||| || ||||||
Sbjct 767 TGTCTCATGTCAGTCTTCGCATCATTTCAATGTGCTATTTTGAGTCTTTATAAAAGTAGA 826
Query 839 GACGTCAAAGATTGGATTATAGAAGATAAATTCGTCATTTTCATCACCCTTTACGCTGGA 898
||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 827 GACGTCAAAGATTGGATCATTGAAGATAAATTCGTCATTTTGGTCACCCTTTACGCTGGA 886
Query 899 ATAGTGGGACAAGCGATGTCGACAGTGGTAACGTCATGGTCCATAAAAATGACAGGAGCA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 ATAGTGGGACAAGCGATGTCGACAGTGGTAACGTCATGGTCCATAAAAATGACAGGAGCA 946
Query 959 GTTTTCGTCTCAACATTCAGCCCCGTCAGTCTCGTCGCGGCTACCTTATTCGACTTCCTC 1018
||||||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||
Sbjct 947 GTTTTCGTCTCAACATTCAGCCCCGTCAGCCTCGTCGCCGCTACGTTATTCGATTTCCTC 1006
Query 1019 ATCTTACACTCTCCTTTATACCTCGGCAGCATACTTGGATC-GCTAGTGACTATAACAGG 1077
||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| ||
Sbjct 1007 ATCTTACACTCTCCTTTATACCTTGGCAGCATACTTGGATCAG-TAGTGACTATAACTGG 1065
Query 1078 CCTTTACGTGTTTCTCTGGGGAAGGAAGATTGAGACAGATCAGTCTGTTTCGACGACTCT 1137
||| ||||| ||||| ||||||||||||| ||||||||||||||||||||||| |||| |
Sbjct 1066 CCTCTACGTTTTTCTTTGGGGAAGGAAGAATGAGACAGATCAGTCTGTTTCGAAGACTTT 1125
Query 1138 GAACAGTTCCCAGTTTTGTCAGAATAATGAAAACGAAGACCATATAATAACAAATCATAA 1197
||||||||||||||||| ||||||||| || ||||||||||||| |||| ||||||||||
Sbjct 1126 GAACAGTTCCCAGTTTTCTCAGAATAAGGATAACGAAGACCATACAATAGCAAATCATAA 1185
Query 1198 GGATACTAATTTGCCCGTTTGACATAT 1224
|||||||||||||||||||||| ||||
Sbjct 1186 GGATACTAATTTGCCCGTTTGATATAT 1212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60140252910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5