BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490436
Length=3518
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01400.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 3517 0.0
> AT4G01400.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
COG4 transport (InterPro:IPR013167), Pentatricopeptide
repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: Pentatricopeptide repeat (PPR) superfamily protein
(TAIR:AT5G46100.1); Has 26268 Blast hits to 8959 proteins
in 289 species: Archae - 0; Bacteria - 3; Metazoa - 247;
Fungi - 222; Plants - 25350; Viruses - 0; Other Eukaryotes
- 446 (source: NCBI BLink). | chr4:572997-577276 REVERSE LENGTH=3467
Length=3467
Score = 3517 bits (1904), Expect = 0.0
Identities = 2128/2236 (95%), Gaps = 15/2236 (1%)
Strand=Plus/Plus
Query 1290 AAAATCATAAAAATGCCGGAGCTTGAACAAGACGTTGCGGCGGCGGAGACGGTGGATTCC 1349
||||| | ||||||||||||| |||||||||||| ||| |||||||||||||||||||||
Sbjct 1139 AAAAT-AAAAAAATGCCGGAGATTGAACAAGACGATGCAGCGGCGGAGACGGTGGATTCC 1197
Query 1350 TCCACCGTGAAATTTGGTACACCGGAAGCACTTGAGTATGTACGCTCGCTCACGGACGTT 1409
|||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1198 TCCACCGTTAAATTCGGTACACCGGAAGCACTGGAGTATGTACGGTCGCTCACGGACGTT 1257
Query 1410 GGCGCGATGACGCGTCTTCTTCACGAATGTATTGCTTACCAGCGAAGCTTAGACTCAGAT 1469
||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1258 GGCGCAATGACACGTCTTCTTCACGAATGTATCGCTTACCAGCGAAGCTTAGACTCAGAT 1317
Query 1470 CTCGACACGCTTCTATCTCAGCGGACGGAGCTTGATCGGAATCTCGTTCAGCTTCAGAGA 1529
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CTCGACACGCTTCTATCGCAGCGGACGGAGCTTGATCGGAATCTCGTTCAGCTTCAGAGA 1377
Query 1530 TCCGCCGAGATTCTCGATATCGTGAAAGCAGACGCAGATCACATGCTCGGAAATGTTCGA 1589
|| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1378 TCGGCGGAGATTCTCGATATCGTGAAAGCAGATGCAGATCACATGCTCGGAAATGTTCGA 1437
Query 1590 TCGACTTGTGATCTCGCGGATCAGGTCAGTGGCAAGGTACGAGAACTCGATCTTGCTCAA 1649
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1438 TCGACTTGTGATCTCGCGGATCAAGTCAGTGGCAAGGTACGAGAGCTCGATCTTGCTCAA 1497
Query 1650 TCTCGTGTTAATGTTACTCTCTCCCGCATTGACGCAATTGTCGAGCGAGGGAATTGCATC 1709
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1498 TCTCGTGTTAATGTTACTCTCTCCCGCATTGACGCGATTGTTGAGCGAGGGAATTGCATC 1557
Query 1710 GAAGGCGTGAAAACTGCTTTGGAATCGGAGGATTATGAATCTGCTGCGAAATTTGTACAG 1769
||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1558 GAAGGCGTGAAGACTGCTTTGGAATCCGAGGATTACGAATCTGCTGCGAAATTTGTACAG 1617
Query 1770 AGATTTCTCCAGATCGATTCGCAGTACAAGGATTCTGGTTCTGACCAGAGAGAACAGCTT 1829
|||||||||||||| |||| ||||||||||||||||||||| || ||||| |||||||||
Sbjct 1618 AGATTTCTCCAGATTGATTTGCAGTACAAGGATTCTGGTTCCGATCAGAGCGAACAGCTT 1677
Query 1830 CTCGCGTCGAAGAAGCAGCTTGAAGGTATTGCGAAGAAGAAGCTCTTAGCGGCAATAGAC 1889
| |||||||||| |||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1678 CACGCGTCGAAGGAGCAGCTTGAAGGTATTGCGAAGAAGAAGCTCTTGGCAGCAATAGAC 1737
Query 1890 CAGAGGGATCATCCTACAATTTTGAGATTCGTGAGACTGTATTCTCCATTGGGAATGGAG 1949
||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1738 CAGAGAGATCATCCTACAATTTTGAGATTCGTGAGACTGTATTCCCCACTGGGAATGGA- 1796
Query 1950 GA-AGAAGGTCTACAGCTTTACGTTGGTTACTTGAAAAAGGTCATTGCGATGAGAGGAAG 2008
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1797 GACAGAAGGTCTACAGCTTTACGTTGGTTACTTGAAAAAGGTCATTGCGTTGAGAGGAAG 1856
Query 2009 GATGGAATATGAAAATGTGGTTGAGCTTATGGAGCAAGGACTCGGACAGGCTAATTTCGT 2068
|||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||
Sbjct 1857 GATGGAATATGAAAATGTTGTTGAGCTCATGGAGCAAGGACTCGGACAGGTTAATTTCGT 1916
Query 2069 TGGGTGCTTAGCCAATTTGTTTAAGGATATTGTCATGGCTATTGTAGAAAACGATGAGAT 2128
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1917 TGGGTGCTTAACCAATTTGTTTAAGGATATTGTCATGGCTATTGAAGAAAACGATGAGAT 1976
Query 2129 CTTGAGGGGTCTTTGTGGAGAAGACGGTGTTGTTTATGCGATTTGTGAATTGCAAGAGGA 2188
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1977 CTTGAGGGGTCTTTGTGGAGAAGATGGTGTTGCGTATGCGATTTGTGAATTGCAAGAGGA 2036
Query 2189 ATGTGATTCT-AGAGGTTCGTTGATCTTGAAGAAGTACATGGAGTTTAGAAAGTTAGCTA 2247
|||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2037 ATGTGATT-TAAGAGGTTCGTTGATCTTGAAGAAGTACATGGACTTTAGAAAGTTAGCTA 2095
Query 2248 GATTGGCGTCTGATATTAACAATTCTCCGAATCTGAATCTTCTTGCTGGTGGTGCGCCTG 2307
||||||||||||||||||||||||||| ||||||||| ||||| | ||||||||| |||
Sbjct 2096 TATTGGCGTCTGATATTAACAATTCTCCCAATCTGAATATTCTTCCCGGTGGTGCGTCTG 2155
Query 2308 AAGGACCAGACCCGAGAGAAGTTGAGCTGTATGTGGAAGAGATACTGTCACTGATGCAGA 2367
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2156 AAGGACCAGACCCGAGAGAAGTTGAGCTGTATGTGGAAGAGATACTGTCACTGATGCAG- 2214
Query 2368 TT-GGTGAGGATTATACCGAGTTCGTGGTGTCAAAAATCAAGTCTTTGACGTCGGTAGAT 2426
|| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2215 TTGGGTGAGGACTATACCGAGTTCATGGTGTCAAAAATCAAGTCTTTGACGTCGGTAGAT 2274
Query 2427 CCTGAATTGTTGCCAAGGGCTACAAAGGCATTTAGAAATGGA-AGTTTTTGCAAAGTGAT 2485
|||||||||||||||| |||||||||||||||||||||| | |||||| |||||| |||
Sbjct 2275 CCTGAATTGTTGCCAACGGCTACAAAGGCATTTAGAAAT-AAGAGTTTTAGCAAAGCGAT 2333
Query 2486 TCAGGATGTGACAG-GAT-TCTATGTGATACTAGAAGGGTTCTTTATGGTTGAGAATGTG 2543
|||||||||||| | ||| | ||||| |||||||||||||||||||||||||||||||||
Sbjct 2334 TCAGGATGTGAC-GAGATAT-TATGTTATACTAGAAGGGTTCTTTATGGTTGAGAATGTG 2391
Query 2544 AGGAAAGCTATAAGGATTGATGAGCATGTACCTGACAGCCTTACCACTTCAATGGTGGAC 2603
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2392 AGGAAAGCTATTAGGATCGATGAGCATGTACCTGACAGCCTTACCACTTCAATGGTGGAC 2451
Query 2604 GATGTGTTCTACGTGTTGCAGAGTTGTCTGAGGAGAGCGATTTCAACTTCAAACATCAGT 2663
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2452 GATGTGTTCTACGTGTTGCAGAGTTGTCTGAGGAGAGCGATTTCAACTTCAAACATAAGT 2511
Query 2664 TCTGTGATTGCTGTGTTGAGCAATGCTGGTAGCTTGTTGGGCAATGATTACCATGAAGCT 2723
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2512 TCTGTGATTGCTGTGTTGAGCTATGCTGGTAGCTTGTTGGGCAATGATTACCATGAAGCT 2571
Query 2724 CTACAACAGAAGATTAGAGAGCCAAACCTTGGTGCTAGGTTGTTCTTGGGTGGTATCGGT 2783
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 2572 CTACAACAGAAGATTAGAGAGCCTAACCTTGGTGCTAGGTTGTTCTTGGGTGGTATAGGT 2631
Query 2784 GTGGAAAACACCGGAACTGAGATTGCAACTGCTTTGAACAATATGGACGTGAGCTGCGAG 2843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2632 GTGGAAAACACCGGAACTGAGATTGCAACTGCTTTGAACAATATGGACGTGAGCTGCGAG 2691
Query 2844 TACATTATCAAACTAAAA-ATTGAAATCGAGGAGCAATGTACTGAGATGTTTCCTGCACC 2902
|||||| ||||||||||| || |||||||||||||||||||||||| | |||||||||||
Sbjct 2692 TACATTCTCAAACTAAAACAT-GAAATCGAGGAGCAATGTACTGAGGTATTTCCTGCACC 2750
Query 2903 AGCAGATCGAGAGAGGATAAAATCATGTCTATCCGAGTTAGGCGAGTTAAGCAACACGTT 2962
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 2751 AGCAGATCGAGAGAGGATAAAATCATGTCTATCCGAGCTAGGCGAGTTAAGCAGCACGTT 2810
Query 2963 CAAGCAATTACTCAACTCAGGCATGGAACAGCTAGTGGCAACCGTAACACCAAGAATCCG 3022
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2811 CAAGCAGTTACTCAACTCAGGCATGGAACAGCTAGTAGCAACCGTAACACCAAGAATCCG 2870
Query 3023 TCCGGTTCTAGACACTGTAGCTACCATAAGCTACGAGTTAACAGAAACTGAGTACGCAGA 3082
||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 2871 TCCGGTTCTAGACACCGTGGCTACCATAAGCTACGAGTTAACAGAAACCGAGTACGCAGA 2930
Query 3083 GAACGAGGTGAATGACCCGTGGGTCCAAAGACTGCTCCACTCGGTCGAAACAAATGCCGC 3142
||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct 2931 GAATGAGGTGAACGACCCTTGGGTCCAAAGACTTCTCCACTCAGTCGAAACAAATGCCGC 2990
Query 3143 ATGGCTCCAACCACTCATGACATCCAACAACTACGACTCGTTTCTGCATCTCATAATCGA 3202
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2991 GTGGCTCCAACCACTAATGACATCCAACAACTACGACTCGTTTCTGCATCTCATAATTGA 3050
Query 3203 TTTCATAGTTAAGAGACTCGAAGTCATAATGATGCAGAAACGGTTTAGCCAGCTTGGCGG 3262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3051 TTTCATAGTTAAGAGACTCGAAGTCATAATGATGCAGAAACGGTTTAGCCAGCTTGGTGG 3110
Query 3263 GCTTCAGCTTGACCGAGACACAAGGGCGTTGGTTAGCCATTTCTCGGGAATGACTCAAAG 3322
|||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 3111 GCTTCAGCTTGATCGAGACACAAGGGCTTTGGTTAGCCATTTCTCGGGTATGACTCAAAG 3170
Query 3323 AACAGTGAGAGATAAGTTTGCTCGGTTAACTCAAATGGCGACGATATTGAACTTGGAAAA 3382
|||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||
Sbjct 3171 AACAGTGAGAGATAAGTTTGCTCGGTTAACGCAGATGGCGACGATACTGAACTTGGAAAA 3230
Query 3383 GGTCTCAGAGATTTTGGACTTTTGGGGAGAGAACTCAGGACCCATGACTTGGAGACTCAC 3442
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3231 GGTCTCAGAGATTTTGGACTTTTGGGGAGAAAACTCAGGACCCATGACTTGGAGACTCAC 3290
Query 3443 ACCAGCTGAGGTTAGACGGGTTTTGGGTCTCCGAGTCGAGTTTAAACCCGAATCAGTTTC 3502
||||||||||||||||||||||||||||||||| |||||||| |||||||||||| || |
Sbjct 3291 ACCAGCTGAGGTTAGACGGGTTTTGGGTCTCCGGGTCGAGTTCAAACCCGAATCAATTGC 3350
Query 3503 TGCTCTCAAGTTGTGA 3518
||||||||||||||||
Sbjct 3351 TGCTCTCAAGTTGTGA 3366
Score = 1075 bits (582), Expect = 0.0
Identities = 750/828 (91%), Gaps = 23/828 (3%)
Strand=Plus/Plus
Query 1 AACGGCCGATTTATT----AAAAGCTCCGAAC-GATGATTCGCCGGCCGATCTACGACTG 55
||||||||||||||| |||| ||||| || |||||||||||||||||||||||||
Sbjct 1 AACGGCCGATTTATTAAAAAAAAACTCCG-ACAAATGATTCGCCGGCCGATCTACGACTT 59
Query 56 CTCCGCCGCTGCTCGCCACCTAA-TTACTCCGTTATCGACATTTTCGCGTTTTCT-ATCT 113
| |||||| | ||||||| ||| || ||||||||||||||| ||||||||||| |||
Sbjct 60 CGCCGCCGTTTTTCGCCACTTAACTT-CTCCGTTATCGACATCCTCGCGTTTTCTGTTCT 118
Query 114 GAACACAAAGC-TCGAGAAC-CGAAGGCCTCGGCTTTGGTATCGAATC-CTAGCCCTAAA 170
| | | || |||| ||| | |||| | || | || | | |||||||
Sbjct 119 --ATTC--TTCATC-TGAACATGAA-G-CTCGAAAACCG-ATTG--TCTCGAACCCTAAA 168
Query 171 TCCCCAATCGGGTCTCCGACTCGGGTTCAAAAGCTCATAGCTTCGCAATCGGATCCTCTC 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 TCCCCAATCGGGTCTCCGACTCGGGTTCAAAAGCTCATAGCTTCGCAATCGGATCCTCTC 228
Query 231 CTCGCCAAAGAGATTTTCGATTACGCTTCTCAACAGCCCAATTTCCGCCATTCTCAATCT 290
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 229 CTCGCCAAGGAGATTTTCGATTATGCTTCTCAACAGCCCAATTTCCGCCATTCTCGATCT 288
Query 291 TCTCATCTCATCCTCATTCTCAAACTCGGCCGTGCTAGATATTTCAATCTCATCGACGAC 350
|||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 289 TCTCATCTAATCCTCATTCTCAAACTCGGCCGTGGTAGATATTTCAATCTTATCGACGAC 348
Query 351 GTTCTCGCCAAGCACAGATCAAGTCGTTATCCGGTAACCGGAGAAATATTCACATATCTG 410
||||||||||| |||||||||||| ||||||| ||||||||||||| ||||| ||||||
Sbjct 349 GTTCTCGCCAAACACAGATCAAGTGGTTATCCATTAACCGGAGAAATTTTCACTTATCTG 408
Query 411 ATCAAAGTCTACGCAGAGGCAAAGATACCGGAGAAAGTTTTAAGAACGTTTTACAAAATG 470
||||||||||||||||| |||||| ||||||||||||| ||||| |||||||||||||||
Sbjct 409 ATCAAAGTCTACGCAGAAGCAAAGTTACCGGAGAAAGTCTTAAGTACGTTTTACAAAATG 468
Query 471 CTGGAGTTCAATTTCACGCCGCAGCCAAAACATCTGAATCGGATTCTAGATGTTCTTGTA 530
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 469 CTGGAGTTCAATTTCACGCCGCAGCCAAAACATCTGAATCGGATTCTAGATGTTCTCGTA 528
Query 531 AGCCATAGAGGTTATCTCCAGAAAGCTTTTGAGCTTTTCAAGAGTTCACGGCTTCACGGA 590
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 529 AGCCATAGAGGTTATCTCCAGAAAGCTTTTGAGCTTTTCAAGAGTTCACGGCTTCATGGA 588
Query 591 GTAATGCCTAACACGAGAAGCTACAATATATTGATGCAAGCTTTTTGTTTGAATGATGAT 650
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 589 GTAATGCCTAACACGAGAAGTTACAATTTATTGATGCAAGCTTTTTGTTTGAATGATGAT 648
Query 651 TTGAGTATTGCATACCAATTGTTTGGTAAAATGCTTGAGAGAGATGTTGTCCCTGATGTG 710
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 649 TTGAGTATTGCATACCAACTGTTTGGTAAAATGCTTGAGAGAGATGTTGTCCCTGATGTG 708
Query 711 GAGTCTTATAAGATTCTGATAAAAGGGTTTTGTAGGAAAGGGCAAGTGAATGGTGCTATG 770
|| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 709 GATTCTTATAAGATTCTGATACAAGGGTTTTGTAGGAAAGGTCAAGTGAATGGTGCTATG 768
Query 771 GAATTACTGGAAGATATGTTGAATAAAGGATTTGTTCCCGATAG-ACT 817
|||||||| || |||||||||||||||||||| || || ||||| |||
Sbjct 769 GAATTACTTGATGATATGTTGAATAAAGGATTCGTGCCTGATAGGACT 816
Score = 481 bits (260), Expect = 2e-134
Identities = 304/326 (93%), Gaps = 0/326 (0%)
Strand=Plus/Plus
Query 917 GACATTGATTGGAGGATTGTGTGATCAAGGAATGTTTGATGAAGGGAAGAAGTATCTACA 976
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 813 GACTTTGATTGGAGGATTGTGTGATCAAGGAATGTTTGATGAAGGGAAGAAGTATCTAGA 872
Query 977 AGAGATGATATCGAAGGGGTTTTCTCCTCATTTCTCGATTTCGAATTGTTTGGTAAAAGG 1036
|||||||||||| || ||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 873 AGAGATGATATCCAAAGGGTTTTCTCCTCATTTCTCGGTTTCAAATTGTTTGGTAAAAGG 932
Query 1037 GTTTTGCAGCTTCGGGAAAGTCGAAGAAGCGTGTGATGTGGTAGAGTTTGTGATGAAGAA 1096
|||||| ||||||||||||||||||||||| |||||||| |||||| |||||||||||||
Sbjct 933 GTTTTGTAGCTTCGGGAAAGTCGAAGAAGCTTGTGATGTTGTAGAGGTTGTGATGAAGAA 992
Query 1097 CGGAGAAATATTACATTCAGACACGTGGGAGATGATAATTCCATTGATCTGTAAAGAAGA 1156
|||||||| ||| ||||||||||| ||||||||| |||||||||| |||||||| |||||
Sbjct 993 CGGAGAAACATTGCATTCAGACACTTGGGAGATGGTAATTCCATTAATCTGTAATGAAGA 1052
Query 1157 TGAGACGGAGAAGATCAAACGGTTTCTTGAAGATGCTTTAAAGGAAGAGATAACCGGTGA 1216
|||| ||||||||||||||| |||||||||||||||| |||||||||| |||||||||||
Sbjct 1053 TGAGTCGGAGAAGATCAAACTGTTTCTTGAAGATGCTGTAAAGGAAGAAATAACCGGTGA 1112
Query 1217 TACCAGAATTGTCGATGTCGGTATCG 1242
||||||||| || |||||||||||||
Sbjct 1113 TACCAGAATCGTTGATGTCGGTATCG 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 175132798013
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5