BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490443
Length=3694
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01290.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 3197 0.0
> AT4G01290.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 15 growth stages; Has
1744 Blast hits to 1308 proteins in 219 species: Archae - 0;
Bacteria - 241; Metazoa - 793; Fungi - 253; Plants - 108; Viruses
- 0; Other Eukaryotes - 349 (source: NCBI BLink). | chr4:537990-543869
REVERSE LENGTH=3786
Length=3786
Score = 3197 bits (1731), Expect = 0.0
Identities = 2097/2263 (93%), Gaps = 67/2263 (3%)
Strand=Plus/Plus
Query 252 GAATCCGATACGAGAGATT--AGCCTTCTGACTTTAGGATGAGCTAGtttttttttggtt 309
||||||||||||||||||| |||||| ||| ||||||||||||||| |||| ||||| |
Sbjct 281 GAATCCGATACGAGAGATTAAAGCCTTGTGAGTTTAGGATGAGCTAG-TTTTCTTTGGCT 339
Query 310 tttAGCTGAAATTTTCTCCAGT-TG-AATCTTACACTGTACATATAGCTAAATCGTGATG 367
|| ||||| || |||||| | || |||||| ||||||||||||||||| ||| |||||
Sbjct 340 TTGAGCTGTAA-TTTCTCTTCTCTGAAATCTTTCACTGTACATATAGCTAGATCCTGATG 398
Query 368 AA--------GT--TG---C------T---TTTT-CTAGTTGGGATATTATTGGTGGTTA 404
|| || || | | |||| ||||||| |||||||||||||||||
Sbjct 399 AAGTTGCGTGGTGGTGAATCGTGGTTTAAGTTTTGCTAGTTGAGATATTATTGGTGGTTA 458
Query 405 C--TATTTTAGAAGATTTTGCGT-TTTGGGGGTGTTTACTATAGACAACTACTGTAGAGT 461
| || | | ||||| | | | ||| ||| ||||||||||||||||||||||||||
Sbjct 459 CTGTAATATCGAAGA--AT-CATATTTCACGGTATTTACTATAGACAACTACTGTAGAGT 515
Query 462 TACTTG----A----TT---AAGAGTTACTGGTGTTTCTTCGCCTCAATCAGCTAAGATT 510
|||||| | || ||||| ||||||||||| || |||||||||||||||||||
Sbjct 516 TACTTGATTAAGGCGTTAAGAAGAGATACTGGTGTTTTTTGGCCTCAATCAGCTAAGATT 575
Query 511 TTGTGCGCCGCCTGCATTGTATCATGAGTTTAGCAAATGAACAACAGTTTGCCATGGATC 570
|| | | |||||||||| |||||| |||||||||||||||| |||||||||||||
Sbjct 576 TT-T-----G--TGCATTGTATGATGAGTATAGCAAATGAACAACAATTTGCCATGGATC 627
Query 571 AACTTGGCGAAACCAATGATGATTCGGAAAAGAAACCAAGAATTTCATACACGAGGAAGT 630
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 628 AACTTGTCGAAACCAATGATGATTCGGAAAAGAAACCAAGAATTACATACACGAGGAAGT 687
Query 631 TTCTCT-TATCCTTGAGCGAGAAAGACGTTTGCAAGAAGCTGCCAAATCTACCCAGTGAA 689
|||| | ||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 688 TTCT-TATATCCTTGAGCGAGAAAGACGTTTGCAAGAAGCTGCCAAATCTGCCTGGTGAA 746
Query 690 TTTGATGAAGCACTGTTGCTAGACTTCGAAGATCCTTCACCCGAGCGAGTGAGAATTTCA 749
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 747 TTTGATGAAGCACTGTTGCTTGACTTCGAAGATCCTTCACCCGAGCGAGCAAGAATTTCA 806
Query 750 GGCGATTTTTCATCCCATGGTTTTAGGCGGAATGACTATAGTTCATCGCCTCCCACCAGG 809
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 807 GGCGATTTTTCGTCGCATGGTTTCAGGCGGAATGACTATAGTTCATCGCCTCCCACCAGG 866
Query 810 GGTGAATTAGGTAGTAACTCTCGAGGCATCCATGGAAGATGGGAGGGGCGCTCAGGTGGA 869
|| |||||||||| |||||||||||||| ||||||||||||||| |||||||| ||||||
Sbjct 867 GGGGAATTAGGTACTAACTCTCGAGGCACCCATGGAAGATGGGAAGGGCGCTCTGGTGGA 926
Query 870 TGGAATGATAAAGATAGTGATTCACAGTCAGACCGGGACTC---AGAGCCTGGAAGGCGT 926
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 927 TGGAATGATAAAGATAGTGATTCACAGTCAGACCGGGACTCAGGAGAGCCTGGAAGGCGT 986
Query 927 TCTGGTATGCCATCTCGGAGGCCTTGGCAAGCACCTGAGCATGATGGACTT-TTGGGGAA 985
||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 987 TCTGGTATGCCATCTCGGAGGTCTTGGCAAGCACCTGAGCATGATGGACTTCTT-GGGAA 1045
Query 986 AGGTTCTTTCCCTAAGCCTTCTGGATTTGGTGCGGGAACATCTGCCCCTAGACCTCAATC 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 AGGTTCTTTCCCTAAGCCTTCTGGATTTGGTGCGGGAACATCTGCCCCTAGACCTCAATC 1105
Query 1046 TAATGACCCACATCAGTTGAGTAGAACCAATGAACCTTACCATCCTCCTCGCCCATACAA 1105
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 TAATGACTCACATCAGCTGAGTAGAACCAATGAACCTTACCATCCTCCTCGCCCATACAA 1165
Query 1106 GGCGCCACCTTTCACTAGACGTGACACTAGAGATTCATTCAATGATGAAACATTTGGCTC 1165
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1166 GGCGCCACCTTTCACTAGACGTGACGCTAGAGATTCATTCAATGATGAAACATTTGGTTC 1225
Query 1166 TTCTGATTCTACTAGTGAAGATAGAGCagaagaagaaagaaaaagaagaGCTTCTTTTGA 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 TTCTGATTCTACTAGTGAAGATAGAGCAGAAGAAGAAAGAAAAAGAAGAGCTTCTTTTGA 1285
Query 1226 GTTGTTGAGGAAGGAACATCAAAAAGCATTCCAGGAGAGGCAAAAATCAAACCCAGACTT 1285
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1286 GTTGTTGAGGAAGGAACATCAAAAAGCATTCCAGGAGAGACAAAAATCAAACCCAGACTT 1345
Query 1286 ACGCAAAAACGACTTTGATTTTACTGAACTTCTTGGGGAGTCTAAAGATGAAAAAGGGCG 1345
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1346 ACGCAAAAACGACTTTGATTTTACTGAACTTCTTGGGGAGTCCAAAGATGATAAAGGGCG 1405
Query 1346 TCCAAGTAGAAGCGATGAAGTCAATCACACTCCAATAATTCCTGGTTCTAATAACACCTC 1405
|||||||||||| ||||||||||||||| |||||| |||||||||||||| |||||||||
Sbjct 1406 TCCAAGTAGAAGTGATGAAGTCAATCACGCTCCAACAATTCCTGGTTCTAGTAACACCTC 1465
Query 1406 TTTTCCTTCTCAAAGTAATGCACCCAGACCGCTTGTACCTCCTGGTTTTGCAAGCACAAT 1465
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466 TTTGCCTTCTCAAAGTAATGCACCCAGACCGCTTGTACCTCCTGGTTTTGCAAGCACAAT 1525
Query 1466 TTTGGaaaaaaaGCCAGGGGAAAAACCTCAAATTGATTCTTCTCAATATGAGCGTAGTCC 1525
|||||||||||||| ||||||||||||||||| ||| |||||||||||||||| |||||
Sbjct 1526 TTTGGAAAAAAAGCAAGGGGAAAAACCTCAAACTGAAACTTCTCAATATGAGCGGAGTCC 1585
Query 1526 TTTAAATTCCAAAGGCATTAATGTGGTGAATGGAACATCTGTTAATAATGGGGGAAAACC 1585
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1586 TTTAAATTCCAAAGGCATTAATGTGGTGAATGGAACATCAGTTAATAATGGGGGAAAACC 1645
Query 1586 GTTGGGAATTAAGATAGGTTCAAGTGAGATGCTGATAGAAGGTGAAGATGTTCGTGTTTC 1645
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1646 GTTGGGAATTAAGATAGGTTCAAGTGAGATGCTAATAGAAGGTGAAGATGTTCGTGTCTC 1705
Query 1646 CTCCACTGATGCAAATGAACGGGCTGTTAATATCTCTTCATTTCTAGGAATATCTACAGA 1705
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1706 CTCCACTGATGCAAATGAACGGGCTGTTAATATCTCTTCACTTCTAGGAATATCTACAGA 1765
Query 1706 TACAGTTAATAAGGATAAAAGTTTTGAAAAGCTTTCGTCAATCTCAACTCCTACTGAAAC 1765
|||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 1766 TACAGTTAATAAGGATAAAAGTTTTGAAAAGCTTTCCTCGATCTCGACTCCTACTGAAAT 1825
Query 1766 TCAGGGGTATCCTAGAAAAAGTGAGCAAGCTACAATGATGCTGGACAAGAAGAAAAGCTT 1825
|||||||||||||| |||||||||| |||||||||||| ||||| |||||||||||||||
Sbjct 1826 TCAGGGGTATCCTATAAAAAGTGAGAAAGCTACAATGACGCTGGGCAAGAAGAAAAGCTT 1885
Query 1826 GGAG-ATTTCAGATGGGCCATCAATTCTGGATAAGATATTCAACACTGCTATAAATTTGA 1884
|||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1886 GGAGCATT-CAGATGGGCCATCAATTCTGGATAAGATATTCAACACGGCTATAAATTTGA 1944
Query 1885 ATAGTGGTGACTCCTCTAATATGAATAAGAAAAATGTCGAAAAAGTAGAAGAAATACGAA 1944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1945 ATAGTGGTGACTCCTCTAATATGAATAAGAAAAATGTCGAAAAAGTAGAAGAAATACGAA 2004
Query 1945 GCTCTCAGACCATTAATAAATCCTCCAAGTTCGCACATCTATTTCTTGAAGAAGATAACA 2004
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2005 GCCCTCAGACCATTAATAAATCCTCCAAGTTCGCTCATCTATTTCTTGAAGAAGATAACA 2064
Query 2005 AACCAGTCGAAGATT-TCCCATCCAGCGGGACACCAAGAGGCTTACTGTCACTACTTCAA 2063
|||||||||||| || |||||||||||| | |||||||||||||||||||||||||||||
Sbjct 2065 AACCAGTCGAAG-TTCTCCCATCCAGCGAGCCACCAAGAGGCTTACTGTCACTACTTCAA 2123
Query 2064 GGTGGAGATAAATTGCAAACCTTTGACACAAAAGCAAATGCCGAACTTCCAACGGATTTT 2123
|||| ||||||||||||||| |||||||||||||||||| |||| ||| |||||||||||
Sbjct 2124 GGTGCAGATAAATTGCAAACATTTGACACAAAAGCAAATCCCGACCTTTCAACGGATTTT 2183
Query 2124 CCTTTTCAAGGCCATGCGACTAAAAGCACCGATCAGTTAAGCAGCACTTCGACAAGTAAA 2183
||||||||||||||||| |||||||| || |||||||||||||||||||| |||| ||||
Sbjct 2184 CCTTTTCAAGGCCATGCCACTAAAAGAACTGATCAGTTAAGCAGCACTTCCACAACTAAA 2243
Query 2184 TCAGTAACAGCTGTTCCACCTGTTCTCACTTGTGAAGACCTTGAGCAGTCTATTCTGTCA 2243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2244 TCAGTAACAGCTGTTCCACCTGTTCTCACTTGTGAAGACCTTGAGCAGTCTATTCTGTCA 2303
Query 2244 GAAGTTAGTGACAGCTATCATCCACCTCCACCGCCAGTTGACCAAGACACGAGTGTTTCT 2303
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2304 GAAGTCGGTGACAGCTATCATCCACCTCCACCGCCAGTTGACCAAGACACGAGTGTTCCT 2363
Query 2304 TCAGTGAAAAA-GACCAAACAACGGAAAACATCTGTTGATGACCAGGCTTCGCAGCACCT 2362
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2364 TCAGT-AAAAATGACCAAACAACGGAAAACATCTGTTGATGACCAGGCTTCGCAGCACCT 2422
Query 2363 TCTTTCTTTATTACAGAGAGGTGCAGACCCAAAAATTCAAGATACGCAGCTACTTTCAGT 2422
||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||
Sbjct 2423 TCTTTCTTTATTACAGAGAAGTTCAGACCCAAAAAGTCAAGATACGCAGCTACTTTCAGC 2482
Query 2423 TACAGAGAGGAGACCACCACCACCATCTGTGAAATCAAATACA 2465
|||||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 2483 TACAGAGAGGAGACCACCACCACCATCTATGAAAACAACTACA 2525
Score = 1988 bits (1076), Expect = 0.0
Identities = 1206/1267 (95%), Gaps = 15/1267 (1%)
Strand=Plus/Plus
Query 2437 CACCACCACCATCTGTGAAATCAAATACAGCTGGAGAAGCAGATCCAGGGAAGTCTTTGA 2496
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2524 CACCACCACCATCTGTGAAATCAACTACAGCTGGAGAAGCAGATCCAGGGAAGTCTTTGA 2583
Query 2497 CTCTTGAGAATCTATTTGGGAGTGCCTTCATGAACGAACTGCAGTCGATTGGAGAACCTG 2556
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2584 CTCTTGAGAATTTATTTGGGAGTGCCTTCATGAACGAACTGCAGTCGATTGGAGAACCTG 2643
Query 2557 TCTCTGGACGAGCTATGGTTTCTGATGCTCCAGGGGTCCCACTTCGATCAGAAAGGTCAA 2616
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2644 TCTCTGGAAGAGCTATGGTTTCTGATGCTCCAGGGGTCCCGCTTCGATCAGAAAGGTCAA 2703
Query 2617 TTATTGAACTGAGCCAAAGAAACCAAATCAGACCTGACGGTCTCCCCGGAGGGATACTAG 2676
|| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 2704 TTGGTGAACTGAGCCAAAGAAACCAAATCAGACCTGACGGTCCCCCCGGAGGGGTACTAG 2763
Query 2677 CCCTTCCAGAAGATGGTAACTTGCTTGCGGTTGGCGGTCATGCAAACCCACCAAAATACA 2736
|||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||
Sbjct 2764 CCCTTCCAGAAGATGGTAACTTACTTGCAGTTGGCGGTCATGCAAACCCATCAAAATACA 2823
Query 2737 TGTCTTTTCCTGGATCTCATAATCAAGAGCCTGAAGTAGCTTTCAACATCTCTGACAAGT 2796
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2824 TGTCTTTTCCAGGATCTCATAATCAAGAGCCTGAAGTAGCTTTCAACATCTCTGACAAGT 2883
Query 2797 TAGCTGCCTTAAACTCTGGTCCAAGGAACGAAAGACCAACAATGGGAGGTCAAGATGGTC 2856
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2884 TAGCTGCCTTGAACTCTGGTCCAAGGAACGAAAGACCAACAATGGGTGGTCAAGATGGTC 2943
Query 2857 CTTTTCTCCACCGCCATCCCCAACAATACGCGACCGACCCCTCTTCTCACTTGAATGGTT 2916
||||||||||| |||||||||||||||| |||| ||||||| ||||||||||||||||
Sbjct 2944 TTTTTCTCCACCAACATCCCCAACAATACGTGACCAACCCCTCGTCTCACTTGAATGGTT 3003
Query 2917 CAGGCCCAGTATTCCATCCGTTCGATTCACGACATGCTCATGTAAAACCTCAGCTCGATT 2976
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3004 CAGGCCCAGTATTCCATCCGTTCGATTCACAACATGCTCATGTAAAACCTCAGCTCGATT 3063
Query 2977 TCATTGGACCAGGAAGCATC-ATGGCTCAACATCATGACCCTCCACCAAATCACCGATTT 3035
|||| ||||||||||||| | ||| ||||||||||||||||||||||||||||||| |||
Sbjct 3064 TCATGGGACCAGGAAGCA-CTATGTCTCAACATCATGACCCTCCACCAAATCACCGGTTT 3122
Query 3036 CCACCAAACATGATTCACCGTCCACCTTT---TCATACACCAACCAGTGGACATCCCGAG 3092
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3123 CCACCAAACATGATTCACCGTCCACCTTTCCATCATACACCAACCAGTGGACATCCCGAG 3182
Query 3093 TTTGATCGTCTTCCTCCACATATGATGCAGAAGATGCATATGCAAGACAACCTGCAACAT 3152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183 TTTGATCGTCTTCCTCCACATATGATGCAGAAGATGCATATGCAAGACAACCTGCAACAT 3242
Query 3153 CATCATCTAATGCAAGGATTCCCCGGTGGTGGTCAACAACACCATCACTCTCCTCATGTG 3212
||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||
Sbjct 3243 CATCATCTAATGCAAGGATTCCCCGGTAGTGGTCCACAACCCCATCACTCTCCTCATGTA 3302
Query 3213 AACAACCAGATGCCGGGTCTCATTCCTGAGTTAAACCCGTCACAAGGCTTTCCCTTTGCC 3272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3303 AACAACCAGATGCCGGGTCTCATTCCTGAGTTAAACCCGTCACAAGGCTTTCCCTTTGCC 3362
Query 3273 CATCACCAACCCAACTACGGTATGCCACCACCAGGTTCTCAAGTTAACAGAGGAGAGCAT 3332
|||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3363 CATCGCCAGCCCAACTACGGTATGCCACCACCAGGTTCTCAAGTCAACAGAGGAGAGCAT 3422
Query 3333 CCAGCTTCACTGCAGACACTCTTGGGGATTCAGCAGAGGATGGACCCAGCCAAGCAGATA 3392
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3423 CCAGCTTCACTGCAGACACTCTTGGGGATTCAGCAGAGGATGGACCCAGCCAAACAGATA 3482
Query 3393 CCGGCAGTGGGACAAGCCGGTGGTCCTAATCGCCAAAGCTCTATGGGTCATGAACTCGAC 3452
||||||||||| |||||||||||||||||||| ||| ||||| |||||||||||||||||
Sbjct 3483 CCGGCAGTGGGTCAAGCCGGTGGTCCTAATCGTCAAGGCTCTGTGGGTCATGAACTCGAC 3542
Query 3453 CTTGGGTTTGGCTACAGGTAACTCTACTCTGGCCATAGTCCTTT--AACACCCTAAGAGG 3510
||||||||||||||||||||||| | ||||||||| | |||||| ||||||||||||||
Sbjct 3543 CTTGGGTTTGGCTACAGGTAACTTTGCTCTGGCCACAATCCTTTTTAACACCCTAAGAGG 3602
Query 3511 TGTGTCTACCTAACAGTGAGTTGCTTTGTGATGTGCAAGTAATCAAAATTACCATTTGTG 3570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3603 TGTGTCTACCTAACAGTGAGTTGCTTTGTGATGTGCAAGTAATCAAAATTACCATTTGTG 3662
Query 3571 ATAttttttt-AAGaa-aaaaaaaaaa-gaaaaagaaaaaaTAATATACTTTCTGTCACT 3627
|||||||||| ||||| |||||||||| |||||| ||||| || |||||||| ||| ||
Sbjct 3663 ATATTTTTTTTAAGAACAAAAAAAAAAAGAAAAA-AAAAA-TA-TATACTTT--GTCTCT 3717
Query 3628 ATGAACTCTCGTTTCTCTTGGTGCTTGTGATATGGGAATGCTTTTAATTAACAATGGTAG 3687
||| |||||||||||||||||||||||||||||||| |||||||||||||||| | || |
Sbjct 3718 ATGGACTCTCGTTTCTCTTGGTGCTTGTGATATGGGGATGCTTTTAATTAACAGTAGTTG 3777
Query 3688 ATTTTCT 3694
|||||||
Sbjct 3778 ATTTTCT 3784
Score = 274 bits (148), Expect = 5e-72
Identities = 202/226 (89%), Gaps = 11/226 (5%)
Strand=Plus/Plus
Query 1 TCATCAATCGATCAAAA-ACACAGCAAGAGCAAAATTATCTTTCTGCAGATCGAAACCCT 59
||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||
Sbjct 3 TCATCAATCGATCAAAACAAACAGCAACAGCAAAATTATCTTTCTGCAGATCGAAACCCT 62
Query 60 AATTGTTTTCTCCGTTCTCCttttttt-ttctagaatccgcgactcttttttttgttttt 118
||||| |||||||||||||||||| || |||||||||| ||||||||| |||| ||||
Sbjct 63 AATTGGTTTCTCCGTTCTCCTTTTGTTCTTCTAGAATCGGCGACTCTTACTTTT-TTTT- 120
Query 119 tttgtttctttctatttatctttttctGATGGATTCTGGAATCCTTGTAATTCCCCATTA 178
||||||| ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 121 -------CTTTCTAATTATCCTTTTCTGATGGATTCTGGAATCCATGTAATTCCCCATTA 173
Query 179 GCGTTAAAAACCCTAGCTGTCGAAGACCTTAGATTAGTTCAGAAAT 224
||| |||||||||||||||||||||||||||||||| | |||||||
Sbjct 174 GCGCTAAAAACCCTAGCTGTCGAAGACCTTAGATTACTGCAGAAAT 219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 183962179981
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5