BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490446
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01270.1 | Symbols: | RING/U-box superfamily protein | chr4... 2128 0.0
AT4G01245.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 257 2e-67
> AT4G01270.1 | Symbols: | RING/U-box superfamily protein | chr4:532351-534984
FORWARD LENGTH=1614
Length=1614
Score = 2128 bits (1152), Expect = 0.0
Identities = 1414/1536 (92%), Gaps = 36/1536 (2%)
Strand=Plus/Plus
Query 7 ATGGCAGAAGAAAACGCGGCGGGGAATGCTATTTGTTCAATCTGCTACGAAGATCTCAAA 66
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1 ATGGCCGAAGAAAACGCGGCGGGGAATGCAATTTGTTCAATCTGCTACGAAGATCTTAAA 60
Query 67 CCGGTTGTTGAGAATCTGCAATCAATCTCCGCTTGTGGCCACGTCTTTCACGAACTTTGT 126
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 CCGGTGGTTGAGAATCTGCAATCAATCTCCGCTTGTGGCCATGTCTTTCACGAACTTTGT 120
Query 127 TTGCAGCAATGGTTTGAGTATTGCCCGAGTACGAACAAGCGAAATTGTCCGATTTGTAAG 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTGCAGCAATGGTTTGAGTATTGCCCGAGTACGAACAAGCGAAATTGTCCGATTTGTAAG 180
Query 187 CAGAAGTGCTCTCTAAAGGATCCTTGCCGACTTTACTTCCAGTCTTCCGGGAATC-AA-- 243
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| ||
Sbjct 181 CAGAAGTGCTCTCTAAAGGATCCTTGTCGACTTTACTTTCAGTCTTCTGGGAATCAAACC 240
Query 244 -A-TC----GCCTCGGAAAAAGTCGTTGAAATCGAAGAAGATCCGGTTTTATTGAGAGGA 297
| || |||||||| || || |||| ||||||||||||||||||||| |||||||||
Sbjct 241 GATTCGATTGCCTCGGATAAGGTTGTTGGAATCGAAGAAGATCCGGTTTTGTTGAGAGGA 300
Query 298 GAAGTGAAGCGGCTCCAAGGGAAGATACAAAATCTTACTTCGGCTTTGGAGGCGAAGAAA 357
|||||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||
Sbjct 301 GAAGTGAAGCGGCTTGAAGGGAAGGTACAGAATCTTACTTCGGCTCTGGAGGCGAAGAAA 360
Query 358 AAGGAGAATGTTCAAGTCTCTGATAAGTTGCATCAATGCAATGAACAATTGAAGGAGGAT 417
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 AAGGAGAATGTTGAAGTCTCTGATAAGTTGCATCAATGCAATGAGCAATTGAAGGAGGAT 420
Query 418 AAAGTAAAAAGGTGGGAGGCTCTGCAAGAAATATCAACGACTCAGCACTTGCTTAAGTTA 477
||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 421 AAAGTGAAAAGGTGGGAGGCTCTTCAAGAAATATCAACGACTCAGCATTTGCTTAAGTTA 480
Query 478 AAATCTGAGGAATGTTTCCAGCTTAGTTCACAGTGTGCTAAGCTACAGGAGAGAACTATG 537
||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| ||
Sbjct 481 AAATCTGAGGAATGTATCCAGCTTAACTCACAGTGTGTTAAGCTACAGGAGAGAACTGTG 540
Query 538 GCTCTTGCCAAGGAGCTCGCAGCGCTTAAATTGGTTTCTGATTTAAGCCTGGAGGAAGAT 597
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 541 GCTCTTGCCAAGGAGCTCGCATCGCTTAAATTGGTTTCTGATTTAAGCTTGGAGGAAGAT 600
Query 598 GATGTTCTGAAGCTAGCCTTGTTGGGGAATAACGCTAAGACGAAAGATACAATAGACACA 657
||||| |||||| | |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 601 GATGTACTGAAGTTGGCCTTGTTGGGGAATAACGCGAAGACGAAAGATACAATAGACACA 660
Query 658 CTAGTCAAGTCCTTGGTTATCCGAAATAGGAGTTATAAGGAATTGCTAGCCAAGTGCAAT 717
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 661 CTAGTCAAGTCCTTGGTTATTCGGAATAGGAGTTATAAGGAATTGCTAGCCAAGTGCAAT 720
Query 718 CAGCTGGGCAGAGGCGAAGCGA-GATCTTCTGAGAAACTTGAAAAAGCTTTGGAAAAGAT 776
|||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 721 CAGCTGGGAAGAGGCGAAGC-ACGATCTTCTGAGAAACTTGAAAAAGCTTTGGAAAAGAT 779
Query 777 AGATAAACTAAAGAAGCGAATGAAGGAACTTGAGTTGATAACTGAAGCGAGAGAGAATAG 836
||| ||||||||||| ||||||| ||||||||||||||||||||||| ||||||||| ||
Sbjct 780 AGAAAAACTAAAGAAACGAATGAGGGAACTTGAGTTGATAACTGAAGAGAGAGAGAACAG 839
Query 837 AGTTCTACGGGACATAAACGTTTCAAAGAATTGCAGTTACAGAGAA-TTATCCGAGCCTG 895
|| ||||||||||||||||||||||||||| |||||||||| |||| || ||||||||||
Sbjct 840 AGCTCTACGGGACATAAACGTTTCAAAGAAATGCAGTTACACAGAAGTT-TCCGAGCCTG 898
Query 896 CAACCAAGAGCATGGCTTCTTTCAGAATG-TTTCCATCAGACAACAAAATGGAGAAAATC 954
||| | |||||||| |||||||||||||| |||| ||||||||||||| |||||||||||
Sbjct 899 CAATCGAGAGCATGTCTTCTTTCAGAATGCTTTC-ATCAGACAACAAAGTGGAGAAAATC 957
Query 955 TCCACACCACCTGGTAAATTAGAAGAAAATGATGGCTTTACCAACCAAGGATCATGCTTA 1014
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 958 TCCACACCACCTGGTAAATTAGAAGAAAAGGATGGCTTTACCATTCAAGGATCATGCTTA 1017
Query 1015 AGGGGAAGAGAAGGCTCCTTTGTTAGCAGAACAGACTCAGTTATAGATGTAGATGATGAT 1074
||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1018 AGGGGAAGAGAAGACTCCTTCGTTAGCAGAACAGACTCGGTTATAGATGTAGATGATGAT 1077
Query 1075 ---GTTCCCGAAACCACCATTTCTGGCATCAGACATTCGGA-TACTAATATTGAAGAGAA 1130
||||| ||||||| || ||||||||| ||| ||| ||| ||||||||||||||||||
Sbjct 1078 TATGTTCCTGAAACCAACACTTCTGGCATTAGAGATT-GGAATACTAATATTGAAGAGAA 1136
Query 1131 ATGTGATAATCCCCTGGTGAAGGATATAAAGTTCAACATCCGAGAAA-ACCCGACATCAT 1189
| |||||||| || |||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 1137 AGGTGATAATTCCATGGTGAAGGATATAAAGTTCAACATCAGA-AAAGACCCGACATCAT 1195
Query 1190 CAGTCTCACCTCGCAGCAATGG-AGCTGGAAACATTTGGCAGTCAAAT----C-----GA 1239
|||| |||||| ||||||||| || |||||||||||||||||||| | | ||
Sbjct 1196 CAGTGTCACCTTACAGCAATGGTAG-TGGAAACATTTGGCAGTCAAGTGGAACAAATAGA 1254
Query 1240 AACCTTGGTAGGTGGAGCAAACATGGAGAGAGAAACGAAACAACTCCATCACTAGGAGGG 1299
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1255 AACCTTGGTAGATGGAGCAAACATGGAGAGAGAAACGAAGCAACTCCATCACTAGGAGGT 1314
Query 1300 TCTGGTCCAAGCAAAGATGATCTGATCGCTATTGGACCTGATGGTAAAGGTGGAAGAATC 1359
|||| |||||| ||||||||||| ||| ||||||||||||||||||||||||| ||||||
Sbjct 1315 TCTGTTCCAAGAAAAGATGATCTCATCTCTATTGGACCTGATGGTAAAGGTGGTAGAATC 1374
Query 1360 AAAGTGCTGAGATCTAAACCCCAAATTTCTAACGCCAATACAAGCTCAGGAAGTAGTGGT 1419
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| | | |
Sbjct 1375 AAAGTGCTGAGATCTAAACCCCAAATTTCTAAAACCAATGCAAGCTCAGGAAGT-G-G-T 1431
Query 1420 AAGAGATTCAAGCTCGGAACTAAAACAAGTGGCTCGTCCTCTCAAGGTTGTCTGCAGATC 1479
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1432 AAGAGATTCAAGCTTGGAACTAAAACAAGTGGCTCGTCCTCTCAAGGTTGTCTTCAGATA 1491
Query 1480 GAACACTATTTTGGCAAAACGAATCGCTAATTTTTC 1515
||||||||||| || ||||| ||||||||| |||||
Sbjct 1492 GAACACTATTTCGGAAAAACTAATCGCTAAATTTTC 1527
> AT4G01245.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein match
is: RING/U-box superfamily protein (TAIR:AT4G01270.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae -
12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
| chr4:527591-528144 FORWARD LENGTH=357
Length=357
Score = 257 bits (139), Expect = 2e-67
Identities = 179/197 (91%), Gaps = 8/197 (4%)
Strand=Plus/Plus
Query 687 GAGTTATAAGGAATTGCTAGCCAAGTGCAATCAGCTGGGCAGAGGCGAAGCGAGA-TCTT 745
||||||||||||||||||||||||||||||||||||||| ||||||||||| | | ||||
Sbjct 99 GAGTTATAAGGAATTGCTAGCCAAGTGCAATCAGCTGGGTAGAGGCGAAGC-ACAATCTT 157
Query 746 CTGAGAAACTTGAAAAAGCTTTGGAAAAGATAGATAAACTAAAGAAGCGAATGAAGGAAC 805
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||
Sbjct 158 CTGAGAAACTTGAAAAAGCTTTGGAAAAGATAGAAAAACTAAAGAAACGAATGAGGGAAC 217
Query 806 TTGAGTTGATAACTGAAGCGAGAGAGAATAGAGTTCTACGGGACATAAACGTTTCAAAGA 865
|||||||||||||||||| ||| | | ||| | ||||||||||||||||||||||||
Sbjct 218 TTGAGTTGATAACTGAAG--AGA-ACA---GAGCTATACGGGACATAAACGTTTCAAAGA 271
Query 866 ATTGCAGTTACAGAGAA 882
| |||||||||| ||||
Sbjct 272 AATGCAGTTACACAGAA 288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74899213140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5