BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490447
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01250.1 | Symbols: WRKY22, AtWRKY22 | WRKY family transcrip... 1788 0.0
> AT4G01250.1 | Symbols: WRKY22, AtWRKY22 | WRKY family transcription
factor | chr4:522604-524216 REVERSE LENGTH=1219
Length=1219
Score = 1788 bits (968), Expect = 0.0
Identities = 1114/1181 (94%), Gaps = 23/1181 (2%)
Strand=Plus/Plus
Query 1 TCAGCGCTCTCTTTTGTCTCCTCTGC--TTTTCTCTTCTCTCCTCAGAGATTCGAAGCTT 58
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1 TCAGCGCTCTCTTTTGTCTCCTCTGCTTTTTTCTCTTCTCTCCTCAGAGATTCGAAGC-T 59
Query 59 TTTTGTCTCCCCTGAGTAACCAAATTCAATGGCCGACGATTGGGATCTCCACGCCGTAGT 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTTTGTCTCCCCTGAGTAACCAAATTCAATGGCCGACGATTGGGATCTCCACGCCGTAGT 119
Query 119 CAGAGGCTGCTCAGCCGTTAGCTCATCAGCTACTACCACCACAACCACCGTATATTCCGG 178
|||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 120 CAGAGGCTGCTCAGCCGTAAGCTCATCAGCTACT---------ACCACCGTATATTCCCC 170
Query 179 CGGCGTTTCATCTCACACAAAACCTATATTCACCGTCGGACGACAAAGTAATGCCGTCTC 238
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 171 CGGCGTTTCATCTCACACAAACCCTATATTCACCGTCGGACGACAAAGTAATGCCGTCTC 230
Query 239 CTTCGGAGAGTTTCGAGATCTCTACACACCGTTCACACAAGAATCTGT-GATCTCCTCGT 297
|||||||||| ||||||||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 231 CTTCGGAGAGATTCGAGATCTCTACACACCGTTCACACAAGAATCTGTCG-TCTCTTCGT 289
Query 298 TCTCTTGTCTAAATTACCCAGAAGAACCTAAAAAGCCACAGAACCAGAAACGCCCTCTTT 357
| |||||| |||| |||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 290 TTTCTTGTATAAACTACCCAGAAGAACCTAGAAAGCCACAGAACCAGAAACGTCCTCTTT 349
Query 358 CTCTCTCTGCTTCTTCCGGTAGCGTCACTAGCAAACCCACTGGCTCCAATACCTCTAGAT 417
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 350 CTCTCTCTGCTTCTTCCGGTAGCGTCACTAGCAAACCCAGTGGCTCCAATACCTCTAGAT 409
Query 418 CTAAACGAAGAAAGATACAGCATAAGAAAGTGTGCCATGTAGCAGCAGAGGCTTTAAACT 477
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 410 CTAAAAGAAGAAAGATACAGCATAAGAAAGTGTGCCATGTAGCAGCAGAAGCTTTAAACT 469
Query 478 CCGATGTCTGGGCATGGCGAAAGTACGGACAGAAACCCATCAAAGGTTCACCATATCCAA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 CCGATGTCTGGGCATGGCGAAAGTACGGACAGAAACCCATCAAAGGTTCACCATATCCAA 529
Query 538 GAGGATACTACAGATGTAGTACATCAAAAGGTTGTTTAGCCCGTAAACAAGTGGAGCGAA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 GAGGATACTACAGATGTAGTACATCAAAAGGTTGTTTAGCCCGTAAACAAGTGGAGCGAA 589
Query 598 ACAGATCCGACCCGAAGATGTTCATCGTCACTTACACGGCGGAGCACAATCATCCAGCTC 657
| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 590 ATAGATCCGACCCGAAGATGTTTATCGTCACTTACACGGCGGAGCATAATCATCCAGCTC 649
Query 658 CGACACACCGTAATTCTCTCGCCGGAAGCACCCGTCAGAAAACATCAGATCAACCGACGA 717
||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| |||||
Sbjct 650 CGACACACCGTAATTCTCTCGCCGGAAGCACACGTCAGAAACCATCCGATCAACAGACGA 709
Query 718 CTAAATCTCCGACGACCACGATTGGTACTTATTCATCGTCTCCGGTGACGTCAGCCGACG 777
|||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||
Sbjct 710 GTAAATCTCCGACGACCACTATTGCTACTTATTCATCGTCTCCGGTGACTTCAGCCGACG 769
Query 778 AATTTATTTTGCCTGTGGAGGATC-T--AGCGGTGGGAGATCTTGACGGAGACGAAGATC 834
||||| |||||||||| ||||||| | |||||||||||||||||||||||| |||||||
Sbjct 770 AATTTGTTTTGCCTGTTGAGGATCATCTAGCGGTGGGAGATCTTGACGGAGAAGAAGATC 829
Query 835 TGTTATCTTTGTCGGATACGGTGGTGAGCGATGATTTCTTCGATGGATTAGAGGAATTCG 894
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 830 TGTTATCTTTGTCGGATACGGTGGTTAGCGATGATTTCTTCGATGGGTTAGAGGAATTCG 889
Query 895 CAGCCGGAGATAGCTTTTCCGGGAACTCGGCTCCGGCGAGTTTTGATCTCTCTTGGGTTG 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 CAGCCGGAGATAGCTTTTCCGGGAACTCGGCTCCGGCGAGTTTTGATCTCTCTTGGGTTG 949
Query 955 TGAACAGTTCCGGCACGACCACCGGAGGAATATGATTAGATTACGACGGCTTTAGAATAC 1014
|||||||| ||| ||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 950 TGAACAGTGCCGCCACTACCACCGGAGGAATATGATTAGATTACGACGGCTT-AGAATAC 1008
Query 1015 TCCTT-TTAGGAAAGATATATAGGATCAAGGAATTATTCTCGGATTATATGTaaaaatag 1073
|| || |||||| |||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1009 TC-TTATTAGGACAGATTTATAGGATTAAGGAATTATTCTCGGAGCATATGTAAAAATAG 1067
Query 1074 gaaaaaagaaaaTGTTCTTTGTTACtttttttttCGGCTTTTCTTCCTATTGTTTCTAAA 1133
|| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1068 GATAAAAGAAAATGTTCTTTGTTACTTTTTTT--CGGGTTTTCTTCCTATTGTTTCTAAA 1125
Query 1134 TATCTTAGACAAA-TTTAATTGTATATTTCTTAAGCCCGAT 1173
|||||||| ||| |||||||||||||| ||||||| ||||
Sbjct 1126 CATCTTAGAAAAAATTTAATTGTATATTCCTTAAGCTCGAT 1166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57580025115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5