BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490448
Length=717
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01230.1 | Symbols: | Reticulon family protein | chr4:51626... 1074 0.0
> AT4G01230.1 | Symbols: | Reticulon family protein | chr4:516264-517408
REVERSE LENGTH=729
Length=729
Score = 1074 bits (581), Expect = 0.0
Identities = 673/718 (94%), Gaps = 3/718 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGAGGAAAAGCTAGAAATCGTCGGACCATTGGAGGAGCCGTTGATGGGAAACATC 60
||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1 ATGGAGGAGGAGAAGCTAGAAATCGTCGGGCCTTTGGAGGAGCCGTTGATGGGAAACATC 60
Query 61 GTACCAGAGAAGATCAACGGCTTGGATTCGCTTTCTTCATCAGATACTGATAGCGAGAAA 120
||||||||| ||||||| ||||||||||||||| | || || ||| ||||||||||||||
Sbjct 61 GTACCAGAGGAGATCAATGGCTTGGATTCGCTTACGTCGTCGGATTCTGATAGCGAGAAA 120
Query 121 CCAGATTCTCCCGTTCCGATCAATGCTCCGATCTACCGGATGTTTGGAAGAGAACGACCA 180
|||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCAGATTCCCCCGTTCCCATAAATGCTCCGATCTACCGGATGTTTGGAAGAGAACGACCA 180
Query 181 ATTCACATGGTTCTCGGCGGAGCTGCTGATGTGATACTGTGGAGAGACAAGAAGATCACC 240
||||||||||||||||||||||||||||||||| | || ||||||||||||||| ||||
Sbjct 181 ATTCACATGGTTCTCGGCGGAGCTGCTGATGTGTTGCTATGGAGAGACAAGAAGGTCACG 240
Query 241 TTAGGATTACTCAGTGTAGTGACTGTGATTTGGCTTTTGTTTGGATTTTGTGGTTGTCGT 300
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 241 TTAGGATTACTCAGTGCAGTGACTGTGATTTGGCTTTTGTTTGGATTTGGTGGTCGTCGT 300
Query 301 CTTCTCACATC-CATTTGTCGTGGCTCCATCCTCTTTCTGCTTCTATCATTCCTCTGGTC 359
||||||||||| | |||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 301 CTTCTCACATCTC-TTTGTCGTGGATCCATTCTCTTTCTGCTTCTATCATTCCTCTGGTC 359
Query 360 CAATGCCCTCAACAAATCTCCAGAGAACATAATGGAGATTTATATCCCTGAGAAGCCATT 419
|||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||||
Sbjct 360 CAATGCCCTCAACAAATCTCCAGAGAACATGATGGATATTTACATACCTGAGAAGCCATT 419
Query 420 ACTCCAAGCTGCTTCTGCGATGACCTTTGAGCTTAACTGTGCTTTTGCAACCTTAAGGAG 479
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 420 ACTCCAAGCTGCTTCTGCGATGACATTTGAGCTTAATTGTGCTTTTGCAACCTTAAGGAG 479
Query 480 CATTGCTTTAGAGAGAGACATCAAGAACTTTGTTATGGCACTCATTGGACTTTGGCTTGT 539
|||||||||||| |||||||||||||||||||| |||||| |||| ||||||||||| ||
Sbjct 480 CATTGCTTTAGAAAGAGACATCAAGAACTTTGTAATGGCAGTCATAGGACTTTGGCTAGT 539
Query 540 ATCGATCATCGGAAACTGGTTCAGCTTCTTGTCATTGCTCTACATCTGTTTTGTACTGAT 599
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 540 ATCGGTCATCGGAAACTGGTTCAGCTTCTTGTCATTGCTCTACATTTGTTTTGTACTAAT 599
Query 600 TCACACGGTGCCAATGCTTTATGAGAAGTACGAAGATGAGATTGATCCCATTGCAGAGAA 659
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 600 TCACACGGTGCCAATGCTTTATGAGAAGTATGAAGATGAGATTGATCCAATTGCAGAGAA 659
Query 660 GGCTGTGATTGAGATGAAGAAGCAATACCAAGTTTTTGAAGCCAAGGTTTTTAAGTAA 717
||||||||||||||||||||| || ||||||||||||||||| ||| |||||||||||
Sbjct 660 GGCTGTGATTGAGATGAAGAAACATTACCAAGTTTTTGAAGCTAAG-TTTTTAAGTAA 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34762029724
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5