BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490448 Length=717 Score E Sequences producing significant alignments: (Bits) Value AT4G01230.1 | Symbols: | Reticulon family protein | chr4:51626... 1074 0.0 > AT4G01230.1 | Symbols: | Reticulon family protein | chr4:516264-517408 REVERSE LENGTH=729 Length=729 Score = 1074 bits (581), Expect = 0.0 Identities = 673/718 (94%), Gaps = 3/718 (0%) Strand=Plus/Plus Query 1 ATGGAGGAGGAAAAGCTAGAAATCGTCGGACCATTGGAGGAGCCGTTGATGGGAAACATC 60 ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 1 ATGGAGGAGGAGAAGCTAGAAATCGTCGGGCCTTTGGAGGAGCCGTTGATGGGAAACATC 60 Query 61 GTACCAGAGAAGATCAACGGCTTGGATTCGCTTTCTTCATCAGATACTGATAGCGAGAAA 120 ||||||||| ||||||| ||||||||||||||| | || || ||| |||||||||||||| Sbjct 61 GTACCAGAGGAGATCAATGGCTTGGATTCGCTTACGTCGTCGGATTCTGATAGCGAGAAA 120 Query 121 CCAGATTCTCCCGTTCCGATCAATGCTCCGATCTACCGGATGTTTGGAAGAGAACGACCA 180 |||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 121 CCAGATTCCCCCGTTCCCATAAATGCTCCGATCTACCGGATGTTTGGAAGAGAACGACCA 180 Query 181 ATTCACATGGTTCTCGGCGGAGCTGCTGATGTGATACTGTGGAGAGACAAGAAGATCACC 240 ||||||||||||||||||||||||||||||||| | || ||||||||||||||| |||| Sbjct 181 ATTCACATGGTTCTCGGCGGAGCTGCTGATGTGTTGCTATGGAGAGACAAGAAGGTCACG 240 Query 241 TTAGGATTACTCAGTGTAGTGACTGTGATTTGGCTTTTGTTTGGATTTTGTGGTTGTCGT 300 |||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 241 TTAGGATTACTCAGTGCAGTGACTGTGATTTGGCTTTTGTTTGGATTTGGTGGTCGTCGT 300 Query 301 CTTCTCACATC-CATTTGTCGTGGCTCCATCCTCTTTCTGCTTCTATCATTCCTCTGGTC 359 ||||||||||| | |||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 301 CTTCTCACATCTC-TTTGTCGTGGATCCATTCTCTTTCTGCTTCTATCATTCCTCTGGTC 359 Query 360 CAATGCCCTCAACAAATCTCCAGAGAACATAATGGAGATTTATATCCCTGAGAAGCCATT 419 |||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||||| Sbjct 360 CAATGCCCTCAACAAATCTCCAGAGAACATGATGGATATTTACATACCTGAGAAGCCATT 419 Query 420 ACTCCAAGCTGCTTCTGCGATGACCTTTGAGCTTAACTGTGCTTTTGCAACCTTAAGGAG 479 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 420 ACTCCAAGCTGCTTCTGCGATGACATTTGAGCTTAATTGTGCTTTTGCAACCTTAAGGAG 479 Query 480 CATTGCTTTAGAGAGAGACATCAAGAACTTTGTTATGGCACTCATTGGACTTTGGCTTGT 539 |||||||||||| |||||||||||||||||||| |||||| |||| ||||||||||| || Sbjct 480 CATTGCTTTAGAAAGAGACATCAAGAACTTTGTAATGGCAGTCATAGGACTTTGGCTAGT 539 Query 540 ATCGATCATCGGAAACTGGTTCAGCTTCTTGTCATTGCTCTACATCTGTTTTGTACTGAT 599 |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 540 ATCGGTCATCGGAAACTGGTTCAGCTTCTTGTCATTGCTCTACATTTGTTTTGTACTAAT 599 Query 600 TCACACGGTGCCAATGCTTTATGAGAAGTACGAAGATGAGATTGATCCCATTGCAGAGAA 659 |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 600 TCACACGGTGCCAATGCTTTATGAGAAGTATGAAGATGAGATTGATCCAATTGCAGAGAA 659 Query 660 GGCTGTGATTGAGATGAAGAAGCAATACCAAGTTTTTGAAGCCAAGGTTTTTAAGTAA 717 ||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||||| Sbjct 660 GGCTGTGATTGAGATGAAGAAACATTACCAAGTTTTTGAAGCTAAG-TTTTTAAGTAA 716 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34762029724 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5