BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490453
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01160.1 | Symbols: | BTB/POZ/Kelch-associated protein | ch... 2124 0.0
> AT4G01160.1 | Symbols: | BTB/POZ/Kelch-associated protein |
chr4:494976-497006 REVERSE LENGTH=1518
Length=1518
Score = 2124 bits (1150), Expect = 0.0
Identities = 1406/1528 (92%), Gaps = 23/1528 (2%)
Strand=Plus/Plus
Query 1 ATGGATCTCTCGCTCTCCGGTGGGGATTTTAGGTTTGCTTTCAACAATGTTAAATTTTCC 60
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 1 ATGGATCTCTCACTCTCCGGTGGTGATTTTAGGTTTGCTTTCAACAACGTTAATTTTTCT 60
Query 61 GATCGTCTTCTTCGGATCGAGATCACCCGTAGCAGCGGTGCCGGTGATGAGGTTAGCTGT 120
|||||||||||||||||||||||||||| |||||||||| || | |||||||| ||||
Sbjct 61 GATCGTCTTCTTCGGATCGAGATCACCCAAAGCAGCGGTG-AGG-G-TGAGGTTATCTGT 117
Query 121 TCTAGTGTCGTCGATTGGGCTAGGGATCGCAAACGCAGAAGAG-AG-GA-AGATAA-CAG 176
|||||| |||||||||||||||| ||||||||||||||||||| || | || ||| ||
Sbjct 118 TCTAGTATCGTCGATTGGGCTAGAGATCGCAAACGCAGAAGAGAAGATATAGTTAATGAG 177
Query 177 CAACAACAAAAAACATGA-AGAAGCATTGGTAA-T--GGCTGAACAAGAACCAAAATCAG 232
|||| | || |||| | | ||| |||||||| | |||||||||||||||||||||||
Sbjct 178 -AACAGC-AACAACAAAACACAAGTATTGGTAACTGCGGCTGAACAAGAACCAAAATCAG 235
Query 233 GTGGTGAAGATCATGAGATTGAGAGGGTCAC---TAATAATACTTCAGTTCTAAAAGTTA 289
||||||||| |||||| ||||||| |||| |||||||||||||||||||| |||
Sbjct 236 GTGGTGAAG---ATGAGAATGAGAGGCTCACTAATAATAATACTTCAGTTCTAAGTGTTC 292
Query 290 AAGAATTACATATAAGCTCTGCAATTTTGGCAGCCAAAAGTCAATTTTTCTTCAAGCTAT 349
|||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 293 AAGAGTTACATATAAGCTCTGCAATTTTGGCAGCCAAAAGTCCATTTTTCTACAAGCTAT 352
Query 350 TCTCTAATGGAATGCTTGAGTCAGAGCAAAAACAATTGACATTGAAAATAGATGCTTCTG 409
|||||||||||||||||||||| |||||||||||| |||| |||||||||||||| ||||
Sbjct 353 TCTCTAATGGAATGCTTGAGTCGGAGCAAAAACAAATGACCTTGAAAATAGATGCCTCTG 412
Query 410 AGGAAGCTGCTGTAATGGAGCTCTTGAACTTCATGTATAGCAATTCACTATCAGTCACGG 469
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 413 AGGAAACTGCTGTAATGGAGCTCTTGAAATTCATGTATAGCAATTCACTATCAGTCACTG 472
Query 470 CGCCCTCTGCTTTACTCGATGTGCTAATGGCGGCCGACAAGTTTGAGGTTGCTTCGTGTA 529
|| |||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||
Sbjct 473 CGTCCTCTGCTTTACTCGATGTGTTAATGGTGGCCGACAAGTTTGAGGTTGCTTCATGTA 532
Query 530 TGAATTATTGCAGCCAATTGTTGCTCAAAATGCCCATGACATTAGATTCTGCATTGCTTC 589
|||| ||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||
Sbjct 533 TGAAGTATTGCAGCCAATTGTTGCTCAAAATGCCTATGACATTAGAATCTTCATTGCTTC 592
Query 590 TTCTTGATCTTCCTTCGAGTTTGCTAATGGCTGATTCAGTTAAGCCTTTAACCAATGCTG 649
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 593 TTCTTGATCTTCCTTCAAGTTTGCTAATGGCTGATTCAGTGAAGCCTTTAACCAATGCTG 652
Query 650 CAAGGCAGTTCATCGCCTCTCGTTACAAGAATATGTCCAAGATTACAATGGAGGAGTTGA 709
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 CAAGGCAATTCATAGCCTCTCGTTACAAGAATATGTCCAAGATTACAATGGAGGAGTTGA 712
Query 710 TGGCTTTACCGTTAGTAGGTATCGAGGCGATGCTAGCGAGTGACGGTCTAGAGATCCAAT 769
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 713 TGGCTTTACCGTTAGTAGGTATCGAGGCGATACTAGCGAGTGACGGTCTAGAGATCCAAT 772
Query 770 CTGAAGACATTCTATACGAAGTTGTCTTGAAATGGGTAAAATCAAATTACTCAGTTGTCG 829
|||||||| || |||| |||||||||||||||||||| || ||| ||||||||||| | |
Sbjct 773 CTGAAGACGTTGTATATGAAGTTGTCTTGAAATGGGTCAAGTCACATTACTCAGTTCTAG 832
Query 830 AAGAACGCCAAGAAATACTAGGCTCTCACCTCGCTCGCTACATCCGTTTCCCTCACATGA 889
||| |||||||||| ||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 833 AAGCACGCCAAGAAGTACTAGGCTCTCATCTCGCTCGCTATATACGTTTCCCTCACATGA 892
Query 890 CAATTGGCAGACTCAAGCATATCTTGTCCTCAAACGACTTCACACCTTCTGTGGCATCAA 949
||| || |||||||||| | || ||| ||||||||||||| | |||||||||||||||||
Sbjct 893 CAACTGACAGACTCAAGAAAATATTGACCTCAAACGACTTTAGACCTTCTGTGGCATCAA 952
Query 950 AACTAGTCATTGAAGCTCTCTTCTTCAAAACAGAATCGTTGGCCCACCAACGCTTTCTAC 1009
|||| || |||||||||||||||||||||||||||||||||| ||||||| | ||||||
Sbjct 953 AACTTGTTGTTGAAGCTCTCTTCTTCAAAACAGAATCGTTGGCTCACCAACACGTTCTAC 1012
Query 1010 TAGCCCATGAACAACCCGCCTCAACCAGCCGCTGGTTTGCTAAACGAGCCTATGTACAAA 1069
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1013 TAGCCCATGAACAACCTGCCTCAACCAGCCGCCGGTTTGCTAAACGAGCCTATGTACACA 1072
Query 1070 GACCCATAAAAATTGTAGAGTTCGCGGCTCCTCGGCCCCAATGCATCATTTATTTGGACT 1129
||||||| |||||||| || || |||| ||||||||||||||||||||| ||||||||||
Sbjct 1073 GACCCATCAAAATTGTGGAATTTGCGGTTCCTCGGCCCCAATGCATCATATATTTGGACT 1132
Query 1130 TAAAACGGAAAGAATGTGAAAGCATCTATCCAGCAAGCAGGATATCATCTCAACCGTTTA 1189
||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1133 TAAAACGCAAAGAATGTGAAAGCATCTATCCATCAAGCAGGATATCATCTCAACAGTTTA 1192
Query 1190 CCTTAGGAGGACAAGGGTTCTTTCTCTCAGCTCAATGCAACATGGACCATCTATGTATAA 1249
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||
Sbjct 1193 CCTTAGGAGGACAAGGGTTCTTTCTTTCAGCTCAATGCAACATGGACCATCTTTGTTTAA 1252
Query 1250 TCCACTGTTTTGGATTGTTTATTGGGATGCAAGAAAACGGGTCAGCGAGTGCGA-CTGTG 1308
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1253 TCCATTGTTTCGGATTGTTTATTGGGATGCAAGAAAACGGGTCAGCGAGTGCGAGC-GTG 1311
Query 1309 ACTGTGGACTACGAATTTTCAGTAAGGTCAAAGCCAACGATGGAATTTGTGGGAAAATTC 1368
|||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1312 ACTGTGGACTACGATTTTTCAGTGAGGTCGAAGCCAACGATGGAATTTGTGGGAAAATTC 1371
Query 1369 AAAGGAAACTATACGTTCAGC-AGAGGTAAAGCTGTTGGATGCAGAAACTTGCTAGCTAT 1427
||||||| ||||||||||| | |||||||||||||||||||||||||||||| ||| |||
Sbjct 1372 AAAGGAATCTATACGTTCA-CTAGAGGTAAAGCTGTTGGATGCAGAAACTTGTTAGGTAT 1430
Query 1428 ACCATGGGATATTTTCACAGCCAAGAATTGTCCCTACTTCATCAATGATGTTCTTCATCT 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 ACCATGGGATATTTTCACAGCCAAGAATTGTCCCTACTTCATCAATGATGTTCTTCATCT 1490
Query 1488 CCGGGCCGATCTCTCCATCCGCCTTTAG 1515
|||||| |||||||||||||||||||||
Sbjct 1491 CCGGGCTGATCTCTCCATCCGCCTTTAG 1518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74748611505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5