BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490456
Length=1178
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01140.1 | Symbols: | Protein of unknown function (DUF1191)... 1557 0.0
> AT4G01140.1 | Symbols: | Protein of unknown function (DUF1191)
| chr4:490749-492199 REVERSE LENGTH=1451
Length=1451
Score = 1557 bits (843), Expect = 0.0
Identities = 967/1025 (94%), Gaps = 16/1025 (2%)
Strand=Plus/Plus
Query 162 ATGAAGATCACCAAAACTCATTTGGGTCTTC-T--TCATCGTCGTTCTTGATTTTCTCTT 218
||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||
Sbjct 204 ATGAAGATCACCAAAACTCATTTTGGTCTTCTTCATCATCGTCGTTCTTGATTTTCTCTT 263
Query 219 GGCAATGGGATCTACAAATCTTGGTCTCATCATCATCGTCTTCGTCTTTTGCGTCATCTC 278
|||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||
Sbjct 264 GGCAATGGGATCTACAAAGCTTGGTCTCATCATCATCGTCTTCGTCTTCTGCATCATCTC 323
Query 279 TAATCTACAATCGATGGTTCATTGCATCAACAATA-TTCAAGATTTGGACGATCTGATCC 337
|||||||||| |||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 324 TAATCTACAAACGATGGTTCATTGCATCAACAACATTTC-AGATTTGGACGATCTGATCC 382
Query 338 GTTCATACGCGGCTCATGCCACTACTAGAAGACACACAGGCTCGTTGTACGAAATTTCAC 397
||||||||||||||| ||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 383 GTTCATACGCGGCTCGTGCGACTACAAGAAGACACACAGGCTCGTTGTACGATGTTTCAC 442
Query 398 TTCCGTCGAATCTTTCCGACATCAAAGCATCGGTTGTTACGGTCCGTAACAGTATGTTCT 457
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 443 TTCCGTCAAATCTTTCCGACATCAAAGCATCGGTTGTTACGGTCCGTAACAGTATATTCT 502
Query 458 GGAGAAAAGGAACAAACTTTAGTGGTGTTTTGATTCCTCCGATGGTTAAAACAACGCCGT 517
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 503 GGAGAAAAGGAACAAACTTTAGTGGTGTTTTGATTCCTCCGATGGTTAAAACGTCGCCGT 562
Query 518 ACGCTAAAAGAATAGCTTTTGTCTATGAGAGTTTCGGTGATCACTCTTCATCGGTTTACT 577
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 563 ACGCTAAAAGAATAGCTTTTGTCTTTGAGAGTTTCGGTGATAACTCTTCATCGGTTTACT 622
Query 578 TCCGGTTAGCTGATAATTACTC-TTTCGTTTCTCCGGTTATTGGATTTACCGGTTACGAC 636
|||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| |||
Sbjct 623 TCCGGTTAGCTGATAATTACTCATTT-GTTTCTCCGGTTATTGGATTCACCGGTTATGAC 681
Query 637 GCGACCAACATGAATGATCTCAAAAAATTGAATCTTTCGATCAAGAGAGACAAGCCAATC 696
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 682 GCGACCAACACGAATGATCTCAAAAAATTGAACCTTTCGATCAAGAGAGACAAGCCAATC 741
Query 697 TTGATCAAATTCGATCCTTACGCTTCTCGTAATCGCTCAAGAA-TCAAATGCATCGTCTT 755
|||||||||||||||||| ||||||||||| ||||||||| || ||||||||||||||||
Sbjct 742 TTGATCAAATTCGATCCTCACGCTTCTCGTGATCGCTCAA-AAGTCAAATGCATCGTCTT 800
Query 756 TGGAGATAACGGTTTGTTGTTGAATATCAGCAATACGATACGGAATTACGAATGTGCCAC 815
||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 801 TGGAGATAATGGTTTGTTGTTGAACATCAGCAATACGATACGGAATTACGAGTGTGCCAC 860
Query 816 TACGCATTCTCATGGGCATTACGCACTTGTTGTCCTAAACCAGCAGAAACCCAAACCGGA 875
|||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct 861 TACGAATTCTCATGGGCATTACGCACTTGTTGTCCTAAACCAGGAGAAAGTCAAACCGAA 920
Query 876 ACAGGAACCGGAGTTGGTTCGGAGAAATTGGTGGTGGATTGTTTTAACCGGGATTGGAGT 935
||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 921 ACACGAACCGGTGTTGGTTCGGAGGAATTGGTGGTGGATTGTTTTAACCGGGATTGGAGT 980
Query 936 TTCGGTTATTGTTGTTATGGTGATCATTGTTGT-GGTGAAAG-TAGTgaagaagaagagg 993
|||||||||||| ||| |||||||||||||| | |||| ||| |||||| ||| ||||||
Sbjct 981 TTCGGTTATTGTAGTTGTGGTGATCATTGTT-TCGGTG-AAGTTAGTGAGGAAAAAGAGG 1038
Query 994 ttaagagatatggagagagagtcggagaagaaTGAAACGATCGGAGATGTTTGGATTGGT 1053
|||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1039 TTAAGAGATATGGAAAGAGAGTCGGAGAAGAGTGAAACGATCGGAAATGTTTGGATTGGT 1098
Query 1054 CGGAGTAGAATGCCGGCGGCGACGATGGTTAGAACTCAGCCATGTTTGGAATATCATGAA 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 CGGAGTAGAATGCCGGCGGCGACGATGGTTAGAACTCAGCCATGTTTGGAATATCATGAA 1158
Query 1114 GATCTTCCTTCATCTTCGAATATACCTTGAttttttttactttttGTAGTTTCTGGCTCT 1173
|||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||
Sbjct 1159 GATCTTCCTTCATCTTCGAATATACCATGATTTTTT--ACTTTT-GTAGTTTCTGGCTCT 1215
Query 1174 GTGTA 1178
|||||
Sbjct 1216 GTGTA 1220
Score = 237 bits (128), Expect = 2e-61
Identities = 157/169 (93%), Gaps = 9/169 (5%)
Strand=Plus/Plus
Query 1 ATATGTCCTCTTACTTCCTTTTGAGTGTGTATATGTGCTGCTTAATTATATTCCCTCATC 60
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1 ATATGTCCTCTTACTTCCTTTTGAGTGTGTATA--TG-TGCTTAATTATATTCCCTCATC 57
Query 61 ACAA---C---CTCAATCTCAATCATGTTTCCAAATCTCAATCATGCTTCTTCCACTTTG 114
|||| | ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 58 ACAACCTCAATCTCAATCTCAATCATGTCTCCAAATCTCAATCATGCTTCTTCCACTTTG 117
Query 115 ATTCTTATCTATCTGGATCACAATTCTATTCACAGCCTTTAATCAAAAT 163
|||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 118 ATTCTTATCTATCTGGATCACAATTCTATTCATATCCTTTAATCAAAAT 166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57831027840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5