BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490459
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01110.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1338 0.0
> AT4G01110.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G01453.1);
Has 273 Blast hits to 272 proteins in 18 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 273; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:479963-481160
REVERSE LENGTH=1103
Length=1103
Score = 1338 bits (724), Expect = 0.0
Identities = 904/987 (92%), Gaps = 28/987 (3%)
Strand=Plus/Plus
Query 1 GAGAAGAACAGAGATCATCAAAGAAGTTCAACGACCACCACCCGCGACGAAGATATGGCG 60
|||||||||||||||||||||||||||| ||||||||||||| | ||| |||| ||||||
Sbjct 51 GAGAAGAACAGAGATCATCAAAGAAGTTTAACGACCACCACCGGAGACTAAGAAATGGCG 110
Query 61 GCAGAAACTCTACTTAAACCGGTGCTTCAAAAACCACCAGGCTATCGTGAGCTCCATTCG 120
| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 111 GGAGAGACTCTACTTAAACCGGTGCTTCAAAAACCACCAGGCTACCGTGAGCTCCACTCG 170
Query 121 CAACCTCAAACTCCACTCGG---A---TCATCATCATCATCAACGCTTCGTCGCCCACCA 174
|||||||||||||||||||| | |||||||||||||||| ||||||||||||||||
Sbjct 171 CAACCTCAAACTCCACTCGGTTCATCTTCATCATCATCATCAATGCTTCGTCGCCCACCA 230
Query 175 AAACATGCGATCCCGGCGTCATTTTACCCGACGAAGAAGAAACAATGGAGTCGTTGCCGC 234
|||||||| || || ||| | ||||| ||||||||||||| |||||||||||||||||||
Sbjct 231 AAACATGCCATTCCTGCGGCGTTTTATCCGACGAAGAAGAGACAATGGAGTCGTTGCCGC 290
Query 235 GTCTTTTGCTGCTGCGTCTGCATCACCGTCGCAATTGTCATCCTCCTCCTTATCCTCACC 294
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 291 GTCTTTTGCTGCTGCGTCTGCATCACCGTCGCCATTGTCATTCTCCTCCTTATCCTCACC 350
Query 295 GTCTCCGTCTTCTTCCTTTATTACAGCCCGAGACTCCCCGTCGTACGTCTCTCCTCCTTC 354
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 351 GTCTCCGTTTTCTTTCTTTATTACAGCCCGAGACTCCCCGTCGTACGTCTCTCCTCTTTC 410
Query 355 CGCGTCAGCAATTTCAACTTTTCCGGTGGAAAACCCGGCGACGGTTTATCGCACCTGACG 414
||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct 411 CGCGTCAGCAATTTCAACTTTTCCGGTGGGAAAGCCGGCGACGGTTTATCGCAGTTGACG 470
Query 415 GCGGAGGCGACGGCGAGGCTCGATTTCAGAAACCCTAACGGGAAGTTGCGTTACTATTAC 474
|||||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 471 GCGGAGGCTACAGCGAGGCTTGATTTCAGAAACCCTAACGGGAAGTTACGTTACTATTAC 530
Query 475 GGTAACGTTGACGTGGCGGTGAGTGTAGGAGAAGGTGATTTTGAAACGAGCCTAGGGTCA 534
|||||||||||||||||||||||||||||||||| |||||| |||||||| || ||||||
Sbjct 531 GGTAACGTTGACGTGGCGGTGAGTGTAGGAGAAGATGATTTCGAAACGAGTCTCGGGTCA 590
Query 535 ACGAAAGTCAAAGGATTTGTGCAGAAGCCAGGGAATCGGACGGTTGTGATTATTCCGATA 594
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 591 ACGAAAGTCAAAGGATTTGTGGAGAAGCCAGGGAATCGGACGGTTGTGATTGTTCCGATA 650
Query 595 AAAGTAAAGAAACAACAGGTGGATGATCCGACGGTTAAGAGGCTTAGAGCGGAGATGAAG 654
||||| ||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 651 AAAGTGAAGAAGCAACAGGTGGATGATCCGACGGTTAAGAGGCTAAGAGCGGACATGAAG 710
Query 655 AGTAAAAAGTTGGTGGTGAAAGTGACGGCTAAGACGAAGGTGGGATTGGGTGTGGGAAGG 714
||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||
Sbjct 711 AGTAAAAAGTTGGTGGTGAAAGTGATGGCTAAAACGAAGGTAGGATTGGGTGTGGGAAGG 770
Query 715 CGTAAGATTGTTACGGTGGGGGTTACTATCAGTTGCGGTGGCGTGACATTACAAACGCTT 774
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 771 CGTAAGATTGTTACGGTGGGGGTTACTATCAGTTGCGGTGGCGTGAGATTACAAACGCTT 830
Query 775 GATTCGAAGATGACTAAATGCACCATTAAAATGCTTAAATGGATTAAATTGCACTCATAA 834
||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 831 GATTCAAAGATGAGTAAATGCACCATCAAAATGCTTAAATGGATTAAATTGCACTCATAA 890
Query 835 GTAATGATGATTGATTGATGTGTCTTT-TTC----G-TCGGGATTCAAAACGT-----G- 882
|| |||||||||||||||||||||||| || | |||||||||||||||| |
Sbjct 891 GTTATGATGATTGATTGATGTGTCTTTATTTTTTTGGTCGGGATTCAAAACGTTTAAAGA 950
Query 883 -GCGA-AA-AGTTGAGCTTTACGAATGATCACTGTGTATGTAT-T-T-----GTATTTTT 932
| | || |||| ||||||||||| ||||||||||||||||| | | || |||||
Sbjct 951 TGTGGCAAGAGTTCAGCTTTACGAAAGATCACTGTGTATGTATGTATTATTTGTGTTTTT 1010
Query 933 CTTTTCCCTTCTTGTTTTCACTTTTCA 959
||| |||||||||||||||||||||||
Sbjct 1011 CTTCTCCCTTCTTGTTTTCACTTTTCA 1037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46918693298
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5