BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490460
Length=1621
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01100.2 | Symbols: ADNT1 | adenine nucleotide transporter 1... 1166 0.0
> AT4G01100.2 | Symbols: ADNT1 | adenine nucleotide transporter
1 | chr4:477141-479634 FORWARD LENGTH=1415
Length=1415
Score = 1166 bits (631), Expect = 0.0
Identities = 714/753 (95%), Gaps = 10/753 (1%)
Strand=Plus/Plus
Query 582 TCAAAG-GGCATACTGTACATGTATCGCCAACGGACGGGAAATGAAAATGCCCAACTTAC 640
||| || |||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 672 TCATAGTGGCATACTGTACATGTATCGTCAGCGGACCGGAAATGAAAATGCCCAACTTAC 731
Query 641 TCCTCTTTTACGGCTTGGAGCTGGTGCAACCGCTGGGATAATAGCCATGTCTGCAACGTA 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 TCCTCTTTTACGGCTTGGAGCTGGTGCAACCGCTGGGATAATAGCCATGTCTGCAACGTA 791
Query 701 CCCGATGGATATGGTTCGTGGAAGGCTAACTGTCCAGACCGCAAATTCTCCTTATCAATA 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 CCCGATGGATATGGTTCGTGGAAGGCTAACTGTCCAGACCGCAAATTCTCCTTATCAATA 851
Query 761 TAGAGGGATTGCCCATGCTTTGTCAACTGTCCTGCGAGAGGAAGGTCCACGGGCCTTGTA 820
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 852 TAGAGGAATTGCCCATGCTTTGGCAACTGTCCTGCGAGAGGAAGGTCCACGGGCCTTGTA 911
Query 821 CCGTGGTTGGCTTCCATCAGTGATTGGAGTTGTTCCATATGTGGGCTTGAACTTTGCGGT 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 912 CCGTGGTTGGCTTCCATCAGTGATTGGAGTTGTTCCATATGTGGGCTTGAACTTTTCGGT 971
Query 881 CTATGAGTCTCTAAAGGACTGGCTACTTAAAGACAACCCATTGGGTCTTGTAGTAAACAA 940
|||||||||||||||||||||||| ||||||| ||||||| ||||| |||| ||||||
Sbjct 972 GTATGAGTCTCTAAAGGACTGGCTAGTTAAAGAGAACCCATACGGTCTAGTAGAAAACAA 1031
Query 941 TGACCTGACCATTGTAACGAGGCTCACTTGTGGTGCAATAGCTGGAACAGTTGGTCAAAC 1000
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 TGAGCTGACGGTTGTAACGAGGCTCACTTGTGGTGCAATAGCTGGAACAGTTGGTCAAAC 1091
Query 1001 AATTGCTTATCCACTGGATGTGATTCGTAGGAGAATGCAAATGGTCGGGTGGAAAGATGC 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 AATTGCTTATCCACTGGATGTGATTCGTAGGAGAATGCAAATGGTCGGGTGGAAAGATGC 1151
Query 1061 TTCCGCTGTTGTTACAGGCGAAGGGAGAAGCAAAGCTTTGCTTGAATACACTGGTATGAT 1120
||||||| |||| ||||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct 1152 TTCCGCTATTGTAACAGGCGAAGGGAGAAGCACAGCTTCACTTGAATACACTGGTATGGT 1211
Query 1121 GGATGCATTTAGAAAAACAGTTCGTCATGAAGGCTTCGGAGCATTGTACAAGGGTTTGGT 1180
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1212 CGATGCATTTAGAAAAACAGTTCGTCATGAAGGCTTTGGAGCATTGTACAAGGGTTTGGT 1271
Query 1181 CCCCAATTCAGTGAAGGTTGTACCATCCATTGCGATTGCATTTGTGACATATGAGATGGT 1240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1272 CCCCAATTCAGTGAAGGTTGTACCATCGATTGCGATTGCATTTGTGACATATGAGATGGT 1331
Query 1241 GAAAGAAGTTTTAGGAGTGGAGTTTAGGATATCAGACTGAGTCACATTTGATATCTCAAT 1300
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1332 GAAAGACGTTTTAGGAGTGGAGTTTAGGATATCAGACTGAGTCA--TTTGATATCTCAAT 1389
Query 1301 ACGTTTCGCCGACAAGAAAACGCACTTCTATTT 1333
| | | | ||||||| |||||||||||||
Sbjct 1390 --G---C-C-GTCAAGAAAGCGCACTTCTATTT 1415
Score = 797 bits (431), Expect = 0.0
Identities = 559/615 (91%), Gaps = 31/615 (5%)
Strand=Plus/Plus
Query 1 TGTGTCCTTTGGCTTTTATCATCGCCGCCGGGACACAAAAGAGAGAAAGGGGCTTAGATT 60
|||||| ||||||||||||||||||||||||||||||| | | | | |||||||||||||
Sbjct 23 TGTGTCTTTTGGCTTTTATCATCGCCGCCGGGACACAACACA-A-AGAGGGGCTTAGATT 80
Query 61 TGTGCTTTCGAGAAGTGCTTTGATCTCTCTTCTCCA--CTCACTTCTAATCAGAGA-TT- 116
|||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct 81 TGTGCTTTCGAGAAGTGCTTTGATCTCTCTTCTCCATTTTCACTTCTAATCGGAGATTTC 140
Query 117 TC---------TGTTA------G-G-G-T----TT--AAACTTGTGAAGAAATCTCTAGG 152
|| ||||| | | | | || |||||||||||||||||||||||
Sbjct 141 TCTTAGGGTTTTGTTATTCGTTGAGAGATCGAATTAAAAACTTGTGAAGAAATCTCTAGG 200
Query 153 GATCGTAATCG-TGTTGGTGTGGGGTATTACACTGATTGCGGTTTCTGCCTGAATTGTCT 211
||||||||||| |||||||||||||||||||||||||| |||||| ||||||| || |
Sbjct 201 GATCGTAATCGTTGTTGGTGTGGGGTATTACACTGATTCCGGTTTGAACCTGAATCGTAT 260
Query 212 CTATCAATCGATGGCATCAGAGGATGTGAAAAGAACTGAATCAGCAGCTGTTTCAACGAT 271
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 261 CTATCAATCGATGGCATCAGAGGATGTGAAAAGAACAGAATCAGCAGCTGTGTCAACGAT 320
Query 272 CGTAAATCTGGCGGAGGAAGCGAGGGAAGGAGTCAAAGCTCCGAGTTATGCTTTTAAAAG 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 CGTAAATCTGGCGGAGGAAGCGAGGGAAGGAGTCAAAGCTCCGAGTTATGCTTTTAAAAG 380
Query 332 CATCTGCAAGTCTCTTTTTGCCGGTGGTGTCGCTGGTGGAGTGTCACGAACTGCAGTTGC 391
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 381 CATCTGCAAGTCTCTTTTTGCCGGTGGTGTCGCTGGTGGAGTGTCACGAACTGCTGTTGC 440
Query 392 ACCTTTGGAAAGGATGAAGATTTTACTTCAGGTCCAAAATCCGCATAGTATAAAGTACAG 451
|||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 441 ACCTCTGGAAAGGATGAAGATATTACTTCAGGTCCAAAATCCGCATAATATAAAGTACAG 500
Query 452 TGGCACAGTCCAAGGGCTGAAGTATATTTGGAGAACCGAGGGCCTTCGTGGACTGTTCAA 511
||| ||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 501 TGGGACAGTCCAAGGATTGAAGCATATTTGGAGAACCGAGGGACTTCGTGGACTGTTCAA 560
Query 512 AGGAAATGGCACCAACTGTGCTCGTATTGTTCCAAATTCGGCTGTGAAATTTTTCAGCTA 571
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 561 AGGAAATGGCACCAACTGTGCTCGTATTGTTCCTAATTCGGCTGTTAAATTTTTCAGCTA 620
Query 572 TGAGCAAGCTTCAAA 586
|||||||||||||||
Sbjct 621 TGAGCAAGCTTCAAA 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80069869275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5