BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490461
Length=2582
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01090.1 | Symbols: | Protein of unknown function (DUF3133)... 3454 0.0
> AT4G01090.1 | Symbols: | Protein of unknown function (DUF3133)
| chr4:470515-473792 REVERSE LENGTH=2895
Length=2895
Score = 3454 bits (1870), Expect = 0.0
Identities = 2322/2530 (92%), Gaps = 72/2530 (3%)
Strand=Plus/Plus
Query 82 TTTAATTCTTCTGAATTTTCTTTCCAAAAATCCGTTTTTAGAAAATTGGTTGCATCAAAG 141
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 255 TTTAATTCTTCTGAATTTTCTTTCCAAAAACCCCTTTTTAGAAAATTGGTTGCATCATAG 314
Query 142 AGATTAAGCTTTTGATTCATTTATTTCCACCGGAGAAGGATCATCAAATTGGTCTTCTCA 201
||||| | | |||||||||| ||||||||||| |||||||||||| |||||||||
Sbjct 315 AGATT--G-----G-TTCATTTATTCCCACCGGAGAA-GATCATCAAATTCGTCTTCTCA 365
Query 202 CCTA-ACTCGGCGACGACATTCTTCAAGTT-GAAAAAAGA-AGAAGCAAAACCCTAGAAA 258
|||| | ||| ||||||||||||||| ||| ||||||| | | |||||||||||||||||
Sbjct 366 CCTATA-TCGCCGACGACATTCTTCACGTTGGAAAAAA-ACA-AAGCAAAACCCTAGAAA 422
Query 259 CAGAAGCTGATGAGGTCACGAGGGGATGTCTCTGAAGCAGAAGGTACGAGATCAGATGCT 318
|| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 423 TAGTGGCTGATGAGGTCGCGAGGCGATGTCTCTGAAGCAGAAGGTACGAGATCAGATGCT 482
Query 319 GGTTCTTCAAGAAGCGAAGAAGAAACGACTCTCAAGGAGAAACACTCAAATTCGCGAGCT 378
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 483 GGTTCTTCAAGAAGCGAAGAAGAAACGAGTCTGAAGGAGAAACACTCAAATTCGCGAGCT 542
Query 379 GGGTCTCAAAGATCTGGAAAAAGCTTGAGAAATGAGGAGCTTGCTGAGCCTAATTATGGA 438
||||||||||||||||||||||||||||||||| || | ||||||||||| |||
Sbjct 543 GGGTCTCAAAGATCTGGAAAAAGCTTGAGAAAT---GA-----C-GAGCCTAATTACGGA 593
Query 439 TCAGATTCTTCATCTAAGAACACAAGCAGCA-C--CAACCCAATTGAGTATACTGAGCAA 495
||||||||||||||||||||||||||||||| | |||||| ||||||||||| |||||
Sbjct 594 TCAGATTCTTCATCTAAGAACACAAGCAGCAGCAACAACCCTATTGAGTATACAGAGCAT 653
Query 496 GAACGAGCTGAGCTTTTAAGAAGGTTAGATTCTATCAAAGATCATCTTCTT--C----GT 549
||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct 654 GAACGAGCTGAGCTTTTAAGAAGGTTAGATTCTATCAAAGATCATCTACTTCGCGGTGGT 713
Query 550 GGTGGTGGTAATAATGTTGTTGATAAACCTAAAGAACCAGATCATAATCAGCCATTCCTT 609
||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 714 GGTGGTGGTAATAATGTAGTTGATAAACCTAAAGAACCAGATCAGAATCAGCCTTTCCTT 773
Query 610 AGACCAATCCATCTTCATGGTCCTCCTAATCATAATCCTGGTCCTTCTTATTACCATCCG 669
|||||| | ||||||||||||| | ||||||||||||||||||||||||||||||||| |
Sbjct 774 AGACCAGTTCATCTTCATGGTCATGCTAATCATAATCCTGGTCCTTCTTATTACCATCAG 833
Query 670 TATCCTGAGCCTGTTCCGTACCCTGGACCGGTTCATGGAATGTTTCCTCAAGCTTATCAA 729
||||| || ||| ||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 834 TATCCAGAACCTATTCAATACCCTGGACCGGTTCATGGAATGTATCCTCAAGCTTATCAA 893
Query 730 GATCCTTACGGGTTCCAAATCCATAGAAGACCACCTCCCGTTCCTAATCCGAACTGGTAT 789
|||||||| ||| | | ||| |||||||||||||| ||||||||||| |||||||||
Sbjct 894 GATCCTTATGGG-T----A-CCAAAGAAGACCACCTCCAGTTCCTAATCCAAACTGGTAT 947
Query 790 CCTCCCGGTCATTACCCTAATCAGATGGCTCGTCAGTTTCCTGGTGGTCAATATGTTGAA 849
||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 948 CCTCCTGGTCATTACCCTAATCAGATGGCTCGTCAGTATCCTGGAGGTCAATATGTTGAA 1007
Query 850 ATTGGTCCTGATATTGTTGACCCACATTCTTACTTTCCAGCTACTCCGGGTAGGTACGGT 909
||||||||||||| ||||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct 1008 CTTGGTCCTGATATAGTTGAGCCACATTCTTACTATCCAGCTACTCCTGGTAGGTACGGT 1067
Query 910 GACATGCCTCCGTATAGCCCGGTTTCTTCTCACCATCGTGGCGAGAAACTCGCAACACAG 969
||| |||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||
Sbjct 1068 GACCTGCCTCCGTATAGCCCGGTTTCGTCTCACCATCGTGAAGAGAAACTCGCTACACAG 1127
Query 970 TACAGTGATATGCCTCCTTATAGCCCTGTTTCTTCTCACCATCGTGGCGAGAAACTCACA 1029
||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1128 TACAGTGATATGCCTCCGTATAGCCCGGTTTCGTCTCACCATCGTGGCGAGAAACTCACG 1187
Query 1030 ACACCTTATAGTTCACGTGTTGATAACAGTTCGAGTTTTCCTTCTTCGATGGG-ATCTCC 1088
||||| |||||| |||||||| ||||| ||||||||||||||||||||||||| | ||||
Sbjct 1188 ACACCGTATAGTCCACGTGTTAATAACGGTTCGAGTTTTCCTTCTTCGATGGGCA-CTCC 1246
Query 1089 AGGTCCTCGAGGTGGTTACGCAAGGTGGCCAAGTGATCATGATTCTGAAATGGGCGGTGC 1148
|||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1247 AGGTCCTCGAGGTGGTTATGCAAGGTGGCCGAGTGAACATGATTCTGAAATGGGCGGTGC 1306
Query 1149 TTTTGCTCGTGGGTATGTTAAGAAAGCTGTATCGGATACTGGTGCTCGACGTTGTCATCC 1208
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1307 TTTTGCTCGTGGGTATGTTAAGAAAGCTGTATCGGATACTGGTGTTCGACGTTGTCATCC 1366
Query 1209 TCTTGCTGGTGGTGCTCCTTTTATAGCTTGTCAAAATTGCTTTGAGCTGCTTTACTTGCC 1268
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1367 TCTTGCTGGTGGTGCTCCTTTTATAGCTTGTCATAGTTGCTTTGAGCTGCTTTACTTGCC 1426
Query 1269 TAAGAAGAAGCTTTTGGCTCAGGAAAGGCAACATAAGCTGCAGTGCGGTGCTTGTTCTGA 1328
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1427 TAAGAAGAAGCTTTTGTCTCAGGAAAGGTTACATAAGCTGCAGTGCGGTGCTTGTTCTGA 1486
Query 1329 AGTTATTAATTTCACAATCGTCGATAGGAAACTCGTTTTCTCTTCTGGTAACGAGGAAAC 1388
|||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1487 AGTTATTAGTTTCACAATCGTTGATAGGAAACTCGTTTTCTCTTCTGGTAATGAGGAAAC 1546
Query 1389 AAAACCGGTCTCTCTAAAGGTTGAAGATAGAAGCACAACAAACACAGTAGTGGTTGAGGA 1448
|||||||||||||||| ||||||||||||||| ||||||||||||||||||| | |||||
Sbjct 1547 AAAACCGGTCTCTCTAGAGGTTGAAGATAGAAACACAACAAACACAGTAGTGATAGAGGA 1606
Query 1449 --AC-TCTCTTCTGTTGATTTCAACAACTCGGGTAGCGATATTCCGCCTAAGGATGAAGA 1505
| ||||||||||||||||||||| ||| ||||| |||||||| | ||||||||||||
Sbjct 1607 GGAAGTCTCTTCTGTTGATTTCAACAGCTCAGGTAGAGATATTCCACGTAAGGATGAAGA 1666
Query 1506 AGAACCAGTGCAGGAATTTA-AAAGTCATCAGGATACTAT------GCAAAGCATCCGGT 1558
|||||||||||| ||| | | ||| ||||||||||||||| ||||||| |||| |
Sbjct 1667 AGAACCAGTGCAAGAACTGAGAAA-TCATCAGGATACTATTACTACGCAAAGCGTCCGCT 1725
Query 1559 CTGAATCTCAAAACTCGGATGATGAAGAGAGATCTAGCATTTCTAGTGAACAACAACAAA 1618
||||||||||| |||| ||||||||||| ||||| |||| |||||||||||||||||| |
Sbjct 1726 CTGAATCTCAACACTCAGATGATGAAGAAAGATCGAGCAATTCTAGTGAACAACAACAGA 1785
Query 1619 AGGAGGTCAAATCTGTTCGTCGGCGAGGTAAAGGGTCAAAAGCGCCTGAACCCGCTGCTC 1678
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1786 AGGAGGTCAAATCTGTTCGTCGGCGAGGTAAAGGGTCAAAAGCACCTGAACCCGCTGCTC 1845
Query 1679 CTGATAATGCCAGTCTACTTGAACTTTTTGAGTATTCTAATGTAAACAGAGCTGCACTCG 1738
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1846 CTGATAATGCCAGTCTCCTTGAACTTTTTGAGTATTCTAATGTAAACAGAGCTGCACTCG 1905
Query 1739 CTTACGGAATGGCGCAGTTAGGTTATGACAAGCCAGATAAGCAAAAGTCTTTCATGACAC 1798
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1906 CTTATGGAATGGCGCAGTTAGGTTATGAAAAGCCAGATAAGCAAAAGTCTTTCATGACAC 1965
Query 1799 AGGACTCGCTGCAACCCGAATCAGTAGCTACAGAGACAGAGGTTTCTTACAACGGATATT 1858
||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1966 AGGACTCGCTGAAACCAGAATCAGTAGCTACAGAGACAGAGGTTTCTTACAATGGATACT 2025
Query 1859 CTAACACCGAGATCTCAGAAGAGTCGAGGTACTCAAACAGAAAGGGTAGTGAGTACGGTT 1918
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 2026 CTAACACCGAGATCTCAGAAGATTCAAGGTACTCAAACAGAAAGGGTAGTGAGTACGGTT 2085
Query 1919 CCACAGAGATCACAACGAGGTCCTCTACTGATCGAAATGAAGATCAGATGAAGTCATTAG 1978
| ||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct 2086 CGACAGAGATCACAACGAGGTCCTCTACTGATCAAAACGAAGACCAGATGAAGTCATTAG 2145
Query 1979 AGGTTTGGGTTAACGGACATCTTATACCAGAAGATCTGGTTAGTAGTGCTGAGAAATTAG 2038
||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 2146 AGGTTTGGGTTAATGGACATCTTATACCAGAAGATCTTGTTAGCAGTGCTGAGAAATTAG 2205
Query 2039 CTGGACCAATCCAAGCCGGAAAGTATTGGTATGATTACCGAGCTGGGTTCTGGGGCGTGA 2098
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2206 CTGGACCAATCCAAGCTGGAAAGTATTGGTATGATTACCGAGCTGGGTTCTGGGGAGTGA 2265
Query 2099 TGGGCAAACCGTGTCTCGGTATAGTACCTCCATTTATTGAAGAGTTTAGCCATCCAATGC 2158
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2266 TGGGCAAACCGTGTCTCGGTATAATACCTCCATTTATTGAAGAGTTTAGCCATCCAATGC 2325
Query 2159 CGGATAACTGTGCTGCTGGAAACACAGAAGTGTTTGTGAATGGAAGAGAGCTTCACAAGA 2218
||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2326 TGGATAACTGCGCTGCAGGAAACACAGACGTGTTTGTGAATGGAAGAGAGCTTCACAAGA 2385
Query 2219 GAGATTTTGAGTTACTTGTGGGTCGTGGTCTTCCTCGAGACAAGAACCGTTCTTACATTG 2278
||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 2386 GAGATTTCGAGTTACTTGTGGGTCGTGGTCTGCCTAGAGACAAGAACCGTTCTTACATTG 2445
Query 2279 TTGATATATCAGGAAGAATCCTTGATGGAGATTCAGGGGAAGAACTTCATAGCCTTGGCA 2338
|||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||
Sbjct 2446 TTGATATATCAGGAAGAATCCTTGATCAAGATTCAGGAGAAGAACTTCACAGCCTTGGCA 2505
Query 2339 AATTAGCCCCAACGATTGAGAAGGTGAAGCATGGATTTGGTATGAGAGTTCCAAGATCAT 2398
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2506 AATTAGCCCCAACGATTGAGAAAGTGAAGCATGGATTTGGTATGAGAGTTCCAAGATCAT 2565
Query 2399 TAGCTTCATGAAAGCTCTCACTAGTAACGAGTAAACAACAACACAACCAAATATGATTCT 2458
||||||||||||| ||| | |||||||| | || || |||| ||| || |||||||||
Sbjct 2566 TAGCTTCATGAAAACTCCCCCTAGTAACAACTA--CA-CAAC-CAA--AA-TATGATTCT 2618
Query 2459 GCCTCTTTTTTCAATCTTCATATTATTTATTTGTTAAATT----TGTAAAGTGTGCtttt 2514
|| |||| |||| ||||||||||||||||||||||||| |||||||||| ||||
Sbjct 2619 GCTTCTTGTTTCCATCTTCATATTATTTATTTGTTAAACACAACTGTAAAGTGT--TTTT 2676
Query 2515 ttta-cggttagattttgatttttggtattctttttACAAAATATCTTTGGGGAATTGTC 2573
| | | || |||||||||||||||||||||||||| ||| ||||||||||||| ||||
Sbjct 2677 TACATC--TT-GATTTTGATTTTTGGTATTCTTTTTA-AAA-TATCTTTGGGGAAATGTC 2731
Query 2574 TGTAT-TTTT 2582
||||| ||||
Sbjct 2732 TGTATGTTTT 2741
Score = 86.1 bits (46), Expect = 2e-15
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 33 AAACCTTCCAGCTCAAGTTTGGTAGTAAGTAAGCAGCCATTTAATCCCC 81
|||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 184 AAACCTTCCAGCTCAAGTTTGGTAGTAAGTAAGCAGACATTTAATCCCC 232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128176539365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5