BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490467
Length=688
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01023.1 | Symbols: | RING/U-box superfamily protein | chr4... 896 0.0
> AT4G01023.1 | Symbols: | RING/U-box superfamily protein | chr4:445844-446720
FORWARD LENGTH=711
Length=711
Score = 896 bits (485), Expect = 0.0
Identities = 640/711 (90%), Gaps = 25/711 (4%)
Strand=Plus/Plus
Query 1 ATGTCAGATTCTGGTGAAGCTAAAACGTCAGAGGAAGAATCTCAACTTGCTGAGCAAGAA 60
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGTCAGATTCTGATGAAGCTAAAACGTCGGAGGAAGAATCTCAACTTGCTGAGCAAGAA 60
Query 61 ACAGAGACTCGAGAAGATGAAATGACTAAAAACTTGAAGAAAAGAGGTCTTGATGTAGAC 120
|||||||||| ||||| |||||||||||||||||| |||||||||| |||||||| ||
Sbjct 61 ACAGAGACTCAAGAAGGTGAAATGACTAAAAACTTAAAGAAAAGAGATCTTGATGCAG-T 119
Query 121 A-AAGATGAAGATTCGAAAAACGAAAGCTCCAGATTAGAGAAACTAGAGAAGAAGGTCAA 179
| |||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct 120 AGAAGATGAAGATTCGAATAACGAAAGCTCCAGATTAGAGAAACTAGAGAAGAAGATAAA 179
Query 180 AAAAGCAACATCGAGGAAGCTTGAAACTGAC----T--T---------------TGATGA 218
||||| |||| |||||||||||||||||||| | | ||||||
Sbjct 180 AAAAGAAACAGCGAGGAAGCTTGAAACTGACTTTGTGCTAACAGGGGAAGAGGATGATGA 239
Query 219 TGCATTGCCATTAGCATGTTCCATTTGCAAAAAACCATTCATGGATCCTGTTGTCACCAA 278
||||||||| ||||| |||||||||||| |||| |||||| |||||||||||||||||||
Sbjct 240 TGCATTGCCCTTAGCCTGTTCCATTTGCCAAAACCCATTCTTGGATCCTGTTGTCACCAA 299
Query 279 ATGCAACCATTACTTTTGTGACAAGTGTGCTCTAAAGCATCAAACTGAGAACGATAATTG 338
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||| |||
Sbjct 300 CTGCAACCATTACTTCTGCGACAAGTGTGCTCTAAAGCATCACACTGAGAACGATACTTG 359
Query 339 TTTTGTGTGTAACGAGCCAACTCTAGGGGTTTTCAACACAGCCGTGGAGATCAAGGAAAG 398
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 360 TTTTGTGTGTAACGAGCCAACTCTAGGGCTTTTCGACACAGCCGTGGAGATCAAGGAAAG 419
Query 399 AATAGATGAAGAACGTGAGAAAGCCAGAGCCATGGTGAAGGAAGTGACAGCAATGTTGGA 458
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 420 AATAGAGGAAGAACGTGAGAAAGCCAGAGCCATGGTAAAGGAAGTGACAGCAATGTTAGA 479
Query 459 AAAGGCATCGACAATGGCGGATGGCGCGAGGGGAATATCGGAAAAGGCTGTAAAAATGGT 518
||||||||||||||||||||||| ||| | ||| || || |||||| ||||||||||||
Sbjct 480 AAAGGCATCGACAATGGCGGATGACGCCAAGGGCGTAGCGCAAAAGGTTGTAAAAATGGT 539
Query 519 GGAGGAGATTGAAACAATGGTGGAAAAAGTGGCGGCTATGGCGACAAAGGCGGCAGAAAC 578
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 540 GGAGGAGATTGAAACAATGGTGGAAAAAGTGGCGGCTATGGCCACAAAGGCGGGAGAAAC 599
Query 579 GGCGACAATGGCGGCAGATATGGTGCAAGAAGCTGAGGAGACGATGGAAACGGCTAAAGC 638
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 600 GGCGACAATGGCGGCAGATATGGTGAAAGAAGCTGAGGAGACGATGGAAACAGCTAAAGC 659
Query 639 TAATATGGCGAAAGCGTTTGCGGTAATGAAGACGGTCA-TGTGGAACGTGT 688
||||||| | ||||| |||| |||||||||| |||| | | ||||||||||
Sbjct 660 TAATATGTCCAAAGCCTTTGTGGTAATGAAGTCGGTGAAT-TGGAACGTGT 709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33305239461
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5