BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490482
Length=1878
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 2966 0.0
> AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352023-355233 FORWARD LENGTH=1930
Length=1930
Score = 2966 bits (1606), Expect = 0.0
Identities = 1757/1828 (96%), Gaps = 17/1828 (1%)
Strand=Plus/Plus
Query 1 TAGCCCACGAGTGGGTAAGGAGTGTCTTCATCATC--C-ACCGGAGATCGAGAAATAGCC 57
|||||||||||||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct 1 TAGCCCACGAGTGGGTAAGGAGTGTCTTCATCTTCTTCTACCGGAGATCGAGAAATAGCC 60
Query 58 GACGAAG-TTTG--TTTTGAGTAAAACAGTATTCGTCGGACAACCGAAGCGAAATCCCTA 114
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACGAAGTTTTGTTTTTTGAGTAAAACAGTATTCGTCGGACAACCGAAGCGAAATCCCTA 120
Query 115 ATTT-CC-CAACACGAAATACCAATTTCCCCAATTCGAAAACAAACACGGTCGGATGTCA 172
|||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 ATTTCCCACAACACGAAATACCAATTTCCCCAATTCGAAAACAAACACGGTCTGATGTCA 180
Query 173 GACGCTAGAGATAATGATGACCGTGTTGATTTCGAGGAGGGTAGCTACAGTgagatggag 232
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GACGCAAGAGATAATGATGACCGTGTGGATTTCGAGGAGGGTAGCTACAGTGAGATGGAG 240
Query 233 gatgaagtggaggaggaacaagtagaagagtatgaagaggaggaagaagaagatgaagat 292
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GATGAAGTGGAGGAGGAACAAGTAGAAGAGTATGAAGAGGAGGAAGAAGAAGATGATGAT 300
Query 293 gatgatgaCGGTGGCAATCAGAATGCCGAAGAACGTGACGTGGAAGATTATGGTGATACA 352
|||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 301 GATGATGACGTTGGCAATCAGAATGCCGAAGAACGTGAGGTGGAGGATTATGGTGATACA 360
Query 353 AAAGGAGGGGATATGG-A-A-GCTCAGGAGGAAATAGCTGAAGATGACGACAACCATATT 409
||||| |||||||||| | | | |||||||||||||||||||||||||||||||||||||
Sbjct 361 AAAGGTGGGGATATGGAAGATGTTCAGGAGGAAATAGCTGAAGATGACGACAACCATATT 420
Query 410 GATATCGAGACAGCAGATGATGATGAGAAACCAGCATCTCCTATTGATGAGGAAGATAGG 469
||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 421 GATATTGAGACAGCAGATGATGATGAGAAACCACCATCTCCTATTGATGATGAAGATAGG 480
Query 470 GAAAAGTATTCCCATCTTCTTTCACTTCCTCCTCATGGCTCTGAAGTTTTTATTGGCGGG 529
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 481 GAAAAGTATTCCCACCTTCTTTCACTTCCTCCTCATGGTTCTGAAGTTTTTATTGGTGGG 540
Query 530 CTCCCGAGGGATGTTGGAGAAGAGGACCTGAGGGATCTATGTGAAGAAATAGGCGAGATC 589
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 CTCCCAAGGGATGTTGGAGAAGAGGACCTGAGGGATCTATGTGAAGAGATAGGCGAGATC 600
Query 590 TTTGAGGTGAGACTGATGAAAGACAGGGACTCTGGTGATAGCAAAGGCTATGCTTTTGTA 649
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 601 TTTGAGGTGAGACTGATGAAAGATAGGGACTCTGGTGATAGCAAAGGCTATGCTTTTGTA 660
Query 650 GCCTTCAAAACGAAAGATGTTGCACAAAAGGCCATTGAGGACTTGCACAGTAAAGAGTTT 709
|| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 GCTTTCAAAACCAAAGACGTTGCACAAAAGGCCATTGAGGAGTTGCACAGTAAAGAGTTT 720
Query 710 AAGGGAAAAACCATAAGATGCTCTCTTTCCGAAACTAAGAATAGGCTGTTCATTGGTAAC 769
||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 721 AAGGGAAAAACCATAAGGTGCTCTCTTTCCGAAACGAAGAATAGGTTGTTCATTGGTAAC 780
Query 770 ATACCAAAGAACTGGACTGAGGATGAGTTTAGAAAAGTCATAGAGGATGTTGGTCCTGGA 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ATACCAAAGAACTGGACTGAGGATGAGTTTAGAAAAGTCATAGAGGATGTTGGTCCTGGA 840
Query 830 GTAGAGAACATCGAGCTCATAAAAGACCCAGCAAATACCACGCGTAACCGTGGTTTTGCA 889
|| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 841 GTGGAGAACATCGAGCTCATAAAAGACCCAACAAATACCACTCGTAACCGTGGTTTTGCA 900
Query 890 TTTGTTTTATACTATAACAATGCATGTGCTGATTATTCAAGGCAGAAAATGATCGATTCT 949
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 901 TTTGTTTTGTACTATAACAATGCATGTGCTGATTATTCAAGACAGAAAATGATAGATTCT 960
Query 950 AATTTTAAGCTTGAGGGTAACGCTCCAACTGTGACTTGGGCAGACCCAAAAAGCTCTCCT 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AATTTTAAGCTTGAGGGTAACGCTCCAACTGTGACTTGGGCAGACCCAAAAAGCTCTCCT 1020
Query 1010 GAGCATTCTGCTGCTGCTGCTCAGGTGAAAGCCCTTTATGTCAAGAATATTCCAGAGAAT 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GAGCATTCTGCTGCTGCTGCTCAGGTGAAAGCCCTTTATGTCAAGAATATTCCAGAGAAT 1080
Query 1070 ACCTCAACAGAGCAGCTAAAGGAACTCTTTCAGAGGCATGGAGAAGTGACGAAAATCGTT 1129
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1081 ACCTCAACAGAGCAGCTAAAGGAACTCTTTCAGAGGCATGGAGAAGTGACCAAAATCGTT 1140
Query 1130 ACGCCACCTGGAAAGGGTGGAAAACGTGATTTTGGGTTTGTCCACTATGCTGAAAGATCT 1189
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 ACACCTCCTGGAAAGGGTGGAAAACGTGATTTTGGGTTTGTCCACTATGCTGAAAGATCT 1200
Query 1190 AGTGCATTGAAGGCTGTCAAAGATACCGAGAGATATGAAGTCAATGGTCAACCACTAGAA 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AGTGCATTGAAGGCTGTCAAAGATACCGAGAGATATGAAGTCAATGGTCAACCACTAGAA 1260
Query 1250 GTTGTGCTTGCTAAACCCCAAGCTGAAAGGAAGCATGACCCTTCTTCTTATTCCTATGGC 1309
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 1261 GTTGTGCTTGCTAAACCCCAGGCTGAAAGGAAGCATGACCCTTCTTCTTATTCTTACGGG 1320
Query 1310 GCTGCACCTAATCCTGCCCCCTTTGTGCATCCCACGTTTGGTGGTTTTGCTGCGGCTCCT 1369
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GCTGCACCTACTCCTGCCCCCTTTGTGCATCCCACGTTTGGTGGTTTTGCTGCGGCTCCT 1380
Query 1370 TATGGTGCTATGGGTGCCGGTTTGGGTATTGCCGGTAGTTTTAGTCAGCCAATGATATAT 1429
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1381 TACGGTGCTATGGGTGCCGGTTTGGGTATTGCCGGTAGTTTTAGTCAGCCAATGATCTAT 1440
Query 1430 GGTAGAGGAGCAATGCCAACAGGGATGCAAATGGTTCCAATGCTTCTTCCCGATGGCCGA 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GGTAGAGGAGCAATGCCAACAGGGATGCAAATGGTTCCAATGCTTCTTCCCGATGGCCGA 1500
Query 1490 GTTGGCTATGTTCTGCAACAGCCTGGTATGCAGATGGCAGCAGCACCACCAGCA-CGACC 1548
||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||
Sbjct 1501 GTTGGCTATGTTCTGCAACAGCCTGGTATGCCGATGGCAGCAGCACCACCA-CAACGACC 1559
Query 1549 CAGAAGAGTTGACCGGAATAACGGATCAAGTGGAGGGTCAGGCCGAGATAACAGTCATGA 1608
|||||| ||||||||||||||| ||||| |||||||||||| ||||||||||||||||
Sbjct 1560 AAGAAGAAATGACCGGAATAACGGCTCAAGCGGAGGGTCAGGCAGAGATAACAGTCATGA 1619
Query 1609 ACATGATGGTAACAGAGGAGGCCGAAGGTACCGACCCTACTAGCAACCATAGAGAAAA-T 1667
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1620 ACATGATGGTAACCGAGGAGGCCGAAGGTACCGACCCTACTAGTAACCATAGAGAAAAAT 1679
Query 1668 AAGCAAGTAGAAAAAGAAAAGGAGAGGTGTATTGGGATTTGTTTGTAGTTTGTTTCTTTG 1727
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 1680 AAGCAAGTAGAAAAAGAAAAGGAGAAGTGTATTGGGATTTGTTTGTAGTTTGTTT-TT-G 1737
Query 1728 GAGAACTTTAAAA-GCTCTCTCTCATGTGTTATAAAATATGAAATCGAAACCTTACGGTT 1786
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1738 GAGAACTTTAAAAAGCTCTCTCTCATGTGTTATAAAATATGAAATCGAAACCTTATGGTT 1797
Query 1787 TCCGGTTTGATATGGAGACTGCTGGGGG 1814
|| |||||||||||||||||||||||||
Sbjct 1798 TCTGGTTTGATATGGAGACTGCTGGGGG 1825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92971409340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5