BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490484
Length=568
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00810.1 | Symbols: | 60S acidic ribosomal protein family |... 808 0.0
AT1G01100.1 | Symbols: | 60S acidic ribosomal protein family |... 285 3e-76
> AT4G00810.1 | Symbols: | 60S acidic ribosomal protein family
| chr4:345952-347184 REVERSE LENGTH=676
Length=676
Score = 808 bits (437), Expect = 0.0
Identities = 527/569 (93%), Gaps = 11/569 (2%)
Strand=Plus/Plus
Query 1 AATCGCAGTCTGAGGTATTTTTCTTGATCCTCAAACATTTCCAACACCTAAAGGCTTTTT 60
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 3 AATCGTAGTCTGAGGTATTTTTCTCGATCCTCAAACATTTCCAACACCTAAAGGCTTATT 62
Query 61 CGTTACAGATTTCTCACCAATCTTAGGTTTTATTGTGCTCAGACAATGTCGACTGTGGGA 120
|||||||||||||||||||||||| || ||||||||||||||||||||||||| || |||
Sbjct 63 CGTTACAGATTTCTCACCAATCTTCGGATTTATTGTGCTCAGACAATGTCGACAGTCGGA 122
Query 121 GAACTTGCTTGCAGCTACGCTGTTATGATCCTTGAGGACGAGGGCATTGCCATCACTTCT 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 123 GAACTTGCTTGCAGCTACGCTGTTATGATCCTTGAAGACGAGGGCATTGCCATCACTTCT 182
Query 181 GATAAGATTGCGACTCTGGTCAAAGCTGCTGGTGTTGAGGTTGAGTCTTTCTGGCCAATG 240
||||||||||||||| |||||||||| |||||||||||| ||||||||| ||||||||||
Sbjct 183 GATAAGATTGCGACTTTGGTCAAAGCGGCTGGTGTTGAGATTGAGTCTTACTGGCCAATG 242
Query 241 CTATTTGCCAAGATGGCTGAGAAGAGAAATGTCACCGACCTCATCATGAATGTTGGTGCC 300
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 243 TTATTCGCCAAGATGGCTGAGAAGAGAAATGTCACAGACCTTATCATGAATGTTGGTGCT 302
Query 301 GGTGGTGGTGGAGGCGGTGCCCCCGTGTctgctgccgcacctgctgctgctggaggagct 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 303 GGTGGTGGTGGAGGCGGTGCCCCAGTGTCTGCTGCCGCACCTGCTGCTGCTGGAGGAGCT 362
Query 361 actgctgctgcccctgctAAGGAGGAGAAGAAGGATGAACCCGCAGAAGAAAGTGATGGA 420
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 363 GCTGCTGCTGCCCCTGCTAAGGAGGAGAAGAAGGACGAACCCGCAGAAGAGAGTGATGGA 422
Query 421 GATCTTGGTTTCGGCTTGTTCGATTAGTTGTTTCCTTGTTTTTTGTTTTAAC-TCTTCCT 479
||||||||||||||||||||||||||||||| ||||| | ||| | | | | ||| |
Sbjct 423 GATCTTGGTTTCGGCTTGTTCGATTAGTTGTCTCCTT-TCATTT-T---A-CGT-TTCAT 475
Query 480 ATGTTCTATTGCTTTAGTTGCTTTGAGATTTTAAGTTATGCCATTTCGACACTACTACAC 539
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 476 ATGTTCTATTGCTTTAGTTGCTTTGAGATTTTAAGTTTTGTCATTTCGACACTACTACAG 535
Query 540 TTTGGTCCATTTATATCATGTGCTGGAGT 568
||| || || ||||||||| |||||||
Sbjct 536 TTTACTC--TT-ATATCATGTACTGGAGT 561
> AT1G01100.1 | Symbols: | 60S acidic ribosomal protein family
| chr1:50090-51108 REVERSE LENGTH=587
Length=587
Score = 285 bits (154), Expect = 3e-76
Identities = 283/343 (83%), Gaps = 17/343 (5%)
Strand=Plus/Plus
Query 105 AATGTCGACTGTGGGAGAACTTGCTTGCAGCTACGCTGTTATGATCCTTGAGGACGAGGG 164
||||||||| || ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 54 AATGTCGACAGTTGGAGAGCTTGCTTGCAGCTACGCTGTTATGATCCTCGAGGACGAGGG 113
Query 165 CATTGCCATCACTTCTGATAAGATTGCGACTCT-GGTCAAAGCTGCTGGTGTTGAGG-TT 222
|| || ||||| |||| || || ||||| || ||| ||||||||||||||| || ||
Sbjct 114 TATCGCTATCACGGCTGACAAAATCGCGAC-CTTGGTGAAAGCTGCTGGTGTT-AGTATT 171
Query 223 GAGTCTTTCTGGCCAATGCTATTTGCCAAGATGGCTGAGAAGA-GAAATGTCACCGACCT 281
||||| | ||||||||||||||| ||||||||||||||||| | | || || || || ||
Sbjct 172 GAGTCATACTGGCCAATGCTATTCGCCAAGATGGCTGAGAA-ACGTAACGTGACTGATCT 230
Query 282 CATCATGAATGTTGGTGCCGGTGGTGGTGGAGGCGGTGCCCCCGT-GTctgctgccgcac 340
||||||||| |||||||| |||||||||||| ||||| || || | | ||||| || |
Sbjct 231 CATCATGAACGTTGGTGC---TGGTGGTGGAGGTGGTGCTCCGGTTG-CAGCTGCTGCTC 286
Query 341 ctgctgctg-ctggaggagctactgctgctgccc-ctgctAAGGAGGAGAAGAAGGATGA 398
| ||||||| | || || || | |||||| || ||||| ||||| |||||||||||||
Sbjct 287 CAGCTGCTGGC-GGTGGTGCGGCAGCTGCT-CCTGCTGCTGAGGAGAAGAAGAAGGATGA 344
Query 399 ACCCGCAGAAGAAAGTGATGGAGATCTTGG-TTTCGGCTTGTT 440
|| |||||||| ||||| |||||| |||| |||||| |||||
Sbjct 345 GCCAGCAGAAGAGAGTGACGGAGAT-TTGGGTTTCGGTTTGTT 386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27277141821
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5