BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490489
Length=1613
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00770.1 | Symbols: | unknown protein; Has 127 Blast hits t... 1973 0.0
AT4G00760.1 | Symbols: APRR8, PRR8 | pseudo-response regulator ... 880 0.0
> AT4G00770.1 | Symbols: | unknown protein; Has 127 Blast hits
to 120 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa
- 6; Fungi - 8; Plants - 62; Viruses - 3; Other Eukaryotes
- 46 (source: NCBI BLink). | chr4:331157-333477 FORWARD
LENGTH=1788
Length=1788
Score = 1973 bits (1068), Expect = 0.0
Identities = 1364/1500 (91%), Gaps = 47/1500 (3%)
Strand=Plus/Plus
Query 1 AAGTTCAGCTGCGTACCTGAGCCAAAGAGTGTTTCAGGATGGAACTAAGGCCGAGAATGC 60
|||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1 AAGTTCAGCTTCGTACCTGAGCCAAAGAGTGTTTCAGGATGGAGCTAAGGTCGAGAATGC 60
Query 61 TCAAAGACTGTCTCTTGGAAGATTCCAACTCCTGTTCCTCAAACGGGTTCAAATCGATTC 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 TCAAAGACTGTCTCTTGGAAGATTCCAACTCATGTTCCTCAAACGGGTTCAAATCGATTC 120
Query 121 CTAGACGGCCTCCTCTCAACCATTTCCAAATGATACCAAAGAGGAAACAATCCAATGCAT 180
| ||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 121 CCAGACGGCATCCTCTCAACCCTTTCCCAATGATACCAAAGAGGAAACAATCCAATGCAT 180
Query 181 TGCAGGCTGTGATTAACGCCGTCAAGAGCCTCCGTTCCAACGCCGTCAAATCCGCTCCAT 240
|||||||||||||||||||| |||||| ||||| ||||||| || |||||||||||||||
Sbjct 181 TGCAGGCTGTGATTAACGCCATCAAGAACCTCCATTCCAACACCATCAAATCCGCTCCAT 240
Query 241 CGGGGATCTTACCAAGGAGCCTCTCTCGGCGATTAACACCCAAGAACAAAGCAAAAAACC 300
|||||||||||||||||||||| |||||||| ||| || |||||||||||||| ||||||
Sbjct 241 CGGGGATCTTACCAAGGAGCCTTTCTCGGCGGTTAGCAACCAAGAACAAAGCAGAAAACC 300
Query 301 AAGCAAGCATCACCATTGTTCGGGTCAAAGACATCGTGCGGTGG-AGTTCGTCTAAGGAC 359
|||||||||||||| || |||| ||||||||||||||||| ||| | ||||||||||||
Sbjct 301 AAGCAAGCATCACCGTTATTCGAGTCAAAGACATCGTGCGATGGCA-CTCGTCTAAGGAC 359
Query 360 CTGCATGAAGACATATCACATTTCGAACCGTCTCCGCCTCATCAGTACACAACCAAG-AC 418
|||||||| |||||||||||||| ||| ||||||||||||||||||||| ||
Sbjct 360 CTGCATGAGGACATATCACATTTTGAA---------CCTCATCAGTACACAACCAAGAAC 410
Query 419 AGCAACAACAACCACAGGATCCTCCACCACCAGTGGCACATCCTGCAGCAGTTGGTGTGA 478
| | ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 411 A-CGACAACAACCACAGGATCCTCCACCACCAGCGGCACATCCTGCAGCAGTTGGTCTGA 469
Query 479 CTCGGATTTTACATCGGAGTTTTTACCATCATCATGGGGAAGTATCGTTGAGGAGTGCGG 538
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 470 CTTGGATTTTACATCGGAGTTTTTACCATCATCATGGGGAAGTAACGTTGAGGAGTGCGG 529
Query 539 TGAAAAAGAGAGTGTTAAAAGCAACTTACACTGCGTCGGCGAAGATTCTTGCACAGCAGT 598
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 530 TGAAAAACAGAGTGTTAAAAACAACTTACACTGCGTCGGCGAAGATTCTTGCACAGCAGT 589
Query 599 AATAGTCGCCGACACTGAAGTGGGACCTGAGGAGGACTTACAGTGTGAAAAGGAGCAAAA 658
|||| | ||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 590 AATACTAGCCGACACTGAAGTGGGACCTGAGGAGAACTTACAGTGTGAAAAGGAGCACAA 649
Query 659 CAGCCCTGTCTCAGTGTTTGAGATTCAACATGAGGAATATGACGAAGCATCAGACTCTTC 718
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 650 CAGCCCTGTCTCAGTGTTTGAGATTCAACATGAGGAATATGACGAAACATCAGACTCTTC 709
Query 719 TTTCAGTCAATGCCTTGACAATGTGGAAAGAACCAAAGAAAAGCTTATGCAAACGATTCA 778
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 710 TTTCAGTCAATGCCTTGACAATGTGGAAAGAACCAAACAAAAGCTCATGCAAACGATTCA 769
Query 779 GCGGTTTGAGTCGTTGGCCAACATTAGTCCTTTCAATTTAGACGAATGGGGATCAATGGA 838
|||||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 770 GCGGTTTGAGTCTTTGGCCAACATTAGTCCTTTCAATTTGGATGAATGGGGCTCAATGGA 829
Query 839 TGATGAATCTTGCATGGAAGGAGGACAAGAGACATGTATCAAATatgatgatgatgatga 898
||| | |||||||||||||||||||||||||||| | || | | | | | |||||||
Sbjct 830 TGAAGCATCTTGCATGGAAGGAGGACAAGAGACA-G-AT-ACC-A--A-G-T-ATGATGA 880
Query 899 tgatgagaattgtgatactgttgatggcgagactgaagatgaagatgctgatgaGGTTGA 958
||||||||||||||||||||||||| | |||| |||||||||| | ||||||||||||
Sbjct 881 TGATGAGAATTGTGATACTGTTGATAGAGAGAGTGAAGATGAATACAATGATGAGGTTGA 940
Query 959 AGAGAAGGCAGCACAGCTATGGAACCGGGTCAAAGAAAGACATGCCATTTGGATCCACGA 1018
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 941 AGAGAAGGCAGCACAGCTATGGAACCGAGTCAAAGAAAGACACGCCATTTGGATCCACGA 1000
Query 1019 AGAACATCTGATAATGGACTATTTCAGAGATGAATTGATGCAAAGGACAAACTCATTCCA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 AGAACATCTGATAATGGACTATTTCAGAGATGAATTGATGCAAAGGACAAACTCATTCCA 1060
Query 1079 CGAAACTCAACACTTTAAGGACCAATTGGTG-GCGGAGGCAAAAGGATGGTTGCATGGAT 1137
|||||||||||||||| || |||||||||| ||| ||||||||||||||||||| |||
Sbjct 1061 CGAAACTCAACACTTTGAGAACCAATTGGTATGCG-AGGCAAAAGGATGGTTGCAGGGAA 1119
Query 1138 ATAAAGAATCAGAGCTTGAACGCGGAACA-GTTGGGCAGAGGAGACAAGCATGTGTTAAA 1196
| | ||||||||||||||||||||||||| || | |||||||||||||||||||| || |
Sbjct 1120 AGAGAGAATCAGAGCTTGAACGCGGAACAAGT-GAGCAGAGGAGACAAGCATGTGCTAGA 1178
Query 1197 GAAATCGAAAGACGAGATTGGAATGAGAAACAGAGAAACGAGGAGGGCGATGTGGTGGTT 1256
||||||||||||||||| |||||||||||||||| | | |||||| ||| |||||||||
Sbjct 1179 GAAATCGAAAGACGAGACTGGAATGAGAAACAGATAGAGGAGGAGCACGAAGTGGTGGTT 1238
Query 1257 ACACAGATTGAGGAAGGACTCTTCAGCCTGTTAATGGAAGAAACGTTAACTGCGCTCT-- 1314
|||||||||||||||| ||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 1239 ACACAGATTGAGGAAGAACTCTTCAGCCTGTTAATGGACGAAACTTTAACAACGCTCTCT 1298
Query 1315 ACCAGAACTGATTCCAGTCCACCTGAACATCGCAAA-CAGAAACATCAATGCTTAAGCTT 1373
|||| |||||||||||||||||||||||||| |||| ||| |||||||||||||||||||
Sbjct 1299 ACCAAAACTGATTCCAGTCCACCTGAACATCACAAAACAGTAACATCAATGCTTAAGCTT 1358
Query 1374 TAGAAAGTACAAGGCAAAA-CATTTTTGAATAA-------A-------GCTCAGGTTTT- 1417
|||||| || || |||||| ||||||||||||| | |||||||||||
Sbjct 1359 TAGAAATTAGAAAGCAAAAACATTTTTGAATAAGGCTTTGACTTAAAAGCTCAGGTTTTT 1418
Query 1418 --AGCTCTACTTTTGTAAGAAGGAAGCAAACGAATAACACAATGTAAATTAACCTATAAA 1475
||||||||||||||||||| ||||||||||||||| |||||||| ||| |||| ||||
Sbjct 1419 TTAGCTCTACTTTTGTAAGAATGAAGCAAACGAATAATACAATGTATATTGACCTCTAAA 1478
Score = 102 bits (55), Expect = 1e-20
Identities = 64/68 (94%), Gaps = 2/68 (3%)
Strand=Plus/Plus
Query 1544 AATTAAGCA-CTAAGCGTAGATTCGCGATCGCAGCCATTGAAATTAAAAACCCTAAATCA 1602
||||||||| | |||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1640 AATTAAGCAGC-AAGCGTGGATTCGCGATCGCAGCCATTGAAATTAAAATCCCTAAATCA 1698
Query 1603 AAGCCTAT 1610
||||||||
Sbjct 1699 AAGCCTAT 1706
> AT4G00760.1 | Symbols: APRR8, PRR8 | pseudo-response regulator
8 | chr4:327025-333477 REVERSE LENGTH=3285
Length=3285
Score = 880 bits (476), Expect = 0.0
Identities = 665/751 (89%), Gaps = 34/751 (5%)
Strand=Plus/Minus
Query 748 GAACCAAAGAAAAGCTTATGCAAACGATTCAGCGGTTTGAGTCGTTGGCCAACATTAGTC 807
|||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1050 GAACCAAACAAAAGCTCATGCAAACGATTCAGCGGTTTGAGTCTTTGGCCAACATTAGTC 991
Query 808 CTTTCAATTTAGACGAATGGGGATCAATGGATGATGAATCTTGCATGGAAGGAGGACAAG 867
|||||||||| || |||||||| ||||||||||| | |||||||||||||||||||||||
Sbjct 990 CTTTCAATTTGGATGAATGGGGCTCAATGGATGAAGCATCTTGCATGGAAGGAGGACAAG 931
Query 868 AGACATGTATCAAATatgatgatgatgatgatgatgagaattgtgatactgttgatggcg 927
||||| | || | | | | | |||||||||||||||||||||||||||||||| | |
Sbjct 930 AGACA-G-AT--ACCA--A-G-T-ATGATGATGATGAGAATTGTGATACTGTTGATAGAG 880
Query 928 agactgaagatgaagatgctgatgaGGTTGAAGAGAAGGCAGCACAGCTATGGAACCGGG 987
||| |||||||||| | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 879 AGAGTGAAGATGAATACAATGATGAGGTTGAAGAGAAGGCAGCACAGCTATGGAACCGAG 820
Query 988 TCAAAGAAAGACATGCCATTTGGATCCACGAAGAACATCTGATAATGGACTATTTCAGAG 1047
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 TCAAAGAAAGACACGCCATTTGGATCCACGAAGAACATCTGATAATGGACTATTTCAGAG 760
Query 1048 ATGAATTGATGCAAAGGACAAACTCATTCCACGAAACTCAACACTTTAAGGACCAATTGG 1107
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 759 ATGAATTGATGCAAAGGACAAACTCATTCCACGAAACTCAACACTTTGAGAACCAATTGG 700
Query 1108 TG-GCGGAGGCAAAAGGATGGTTGCATGGATATAAAGAATCAGAGCTTGAACGCGGAACA 1166
| ||| ||||||||||||||||||| ||| | | |||||||||||||||||||||||||
Sbjct 699 TATGCG-AGGCAAAAGGATGGTTGCAGGGAAAGAGAGAATCAGAGCTTGAACGCGGAACA 641
Query 1167 -GTTGGGCAGAGGAGACAAGCATGTGTTAAAGAAATCGAAAGACGAGATTGGAATGAGAA 1225
|| | |||||||||||||||||||| || |||||||||||||||||| |||||||||||
Sbjct 640 AGT-GAGCAGAGGAGACAAGCATGTGCTAGAGAAATCGAAAGACGAGACTGGAATGAGAA 582
Query 1226 ACAGAGAAACGAGGAGGGCGATGTGGTGGTTACACAGATTGAGGAAGGACTCTTCAGCCT 1285
||||| | | |||||| ||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 581 ACAGATAGAGGAGGAGCACGAAGTGGTGGTTACACAGATTGAGGAAGAACTCTTCAGCCT 522
Query 1286 GTTAATGGAAGAAACGTTAACTGCGCTCT--ACCAGAACTGATTCCAGTCCACCTGAACA 1343
||||||||| ||||| ||||| |||||| |||| ||||||||||||||||||||||||
Sbjct 521 GTTAATGGACGAAACTTTAACAACGCTCTCTACCAAAACTGATTCCAGTCCACCTGAACA 462
Query 1344 TCGCAAA-CAGAAACATCAATGCTTAAGCTTTAGAAAGTACAAGGCAAAA-CATTTTTGA 1401
|| |||| ||| ||||||||||||||||||||||||| || || |||||| |||||||||
Sbjct 461 TCACAAAACAGTAACATCAATGCTTAAGCTTTAGAAATTAGAAAGCAAAAACATTTTTGA 402
Query 1402 ATAA-------A-------GCTCAGGTTTT---AGCTCTACTTTTGTAAGAAGGAAGCAA 1444
|||| | ||||||||||| ||||||||||||||||||| |||||||
Sbjct 401 ATAAGGCTTTGACTTAAAAGCTCAGGTTTTTTTAGCTCTACTTTTGTAAGAATGAAGCAA 342
Query 1445 ACGAATAACACAATGTAAATTAACCTATAAA 1475
|||||||| |||||||| ||| |||| ||||
Sbjct 341 ACGAATAATACAATGTATATTGACCTCTAAA 311
Score = 503 bits (272), Expect = 2e-141
Identities = 324/349 (93%), Gaps = 3/349 (1%)
Strand=Plus/Minus
Query 17 CTGAGCCAAAGAGTGTTTCAGGATGGAACTAAGGCCGAGAATGCTCAAAGACTGTCTCTT 76
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1659 CTGAGCCAAAGAGTGTTTCAGGATGGAGCTAAGGTCGAGAATGCTCAAAGACTGTCTCTT 1600
Query 77 GGAAGATTCCAACTCCTGTTCCTCAAACGGGTTCAAATCGATTCCTAGACGGCCTCCTCT 136
||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1599 GGAAGATTCCAACTCATGTTCCTCAAACGGGTTCAAATCGATTCCCAGACGGCATCCTCT 1540
Query 137 CAACCATTTCCAAATGATACCAAAGAGGAAACAATCCAATGCATTGCAGGCTGTGATTAA 196
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 CAACCCTTTCCCAATGATACCAAAGAGGAAACAATCCAATGCATTGCAGGCTGTGATTAA 1480
Query 197 CGCCGTCAAGAGCCTCCGTTCCAACGCCGTCAAATCCGCTCCATCGGGGATCTTACCAAG 256
|||| |||||| ||||| ||||||| || |||||||||||||||||||||||||||||||
Sbjct 1479 CGCCATCAAGAACCTCCATTCCAACACCATCAAATCCGCTCCATCGGGGATCTTACCAAG 1420
Query 257 GAGCCTCTCTCGGCGATTAACACCCAAGAACAAAGCAAAAAACCAAGCAAGCATCACCAT 316
|||||| |||||||| ||| || |||||||||||||| |||||||||||||||||||| |
Sbjct 1419 GAGCCTTTCTCGGCGGTTAGCAACCAAGAACAAAGCAGAAAACCAAGCAAGCATCACCGT 1360
Query 317 TGTTCGGGTCAAAGACATCGTGCGGTGG-AGTTCGTCTAAGGAC-CTGC 363
| |||| ||||||||||||||||| ||| | | ||||||||||| ||||
Sbjct 1359 TATTCGAGTCAAAGACATCGTGCGATGGCACT-CGTCTAAGGACACTGC 1312
Score = 219 bits (118), Expect = 9e-56
Identities = 164/183 (90%), Gaps = 15/183 (8%)
Strand=Plus/Minus
Query 566 ACACTGCGTCGGCGAAGATTCTTGCACAGCAGTAATAGTCGCCGACACTGAAGTGGGACC 625
||||||||||||||||||||||||||||||||||||| | |||||||||||| |
Sbjct 1318 ACACTGCGTCGGCGAAGATTCTTGCACAGCAGTAATACTAGCCGACACTGAA----G--- 1266
Query 626 TGAGGAGGACTTACAGTGTGAAAAGGAGCAAAACAGCCCTGTCTCAGTGTTTGAGATTCA 685
| | || |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1265 T---G-GG----ACAGTGTGAAAAGGAGCACAACAGCCCTGTCTCAGTGTTTGAGATTCA 1214
Query 686 ACATGAGGAATATGACGAAGCATCAGACTCTTCTTTCAGTCAATGCCTTGACAATGTGGA 745
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 ACATGAGGAATATGACGAAACATCAGACTCTTCTTTCAGTCAATGCCTTGACAATGTGGA 1154
Query 746 AAG 748
|||
Sbjct 1153 AAG 1151
Score = 102 bits (55), Expect = 1e-20
Identities = 64/68 (94%), Gaps = 2/68 (3%)
Strand=Plus/Minus
Query 1544 AATTAAGCA-CTAAGCGTAGATTCGCGATCGCAGCCATTGAAATTAAAAACCCTAAATCA 1602
||||||||| | |||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 149 AATTAAGCAGC-AAGCGTGGATTCGCGATCGCAGCCATTGAAATTAAAATCCCTAAATCA 91
Query 1603 AAGCCTAT 1610
||||||||
Sbjct 90 AAGCCTAT 83
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79668264915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5