BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490498
Length=2073
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00720.1 | Symbols: ATSK32, ASKTHETA, SK32 | shaggy-like pro... 3162 0.0
> AT4G00720.1 | Symbols: ATSK32, ASKTHETA, SK32 | shaggy-like protein
kinase 32 | chr4:293641-297314 REVERSE LENGTH=2206
Length=2206
Score = 3162 bits (1712), Expect = 0.0
Identities = 1980/2101 (94%), Gaps = 51/2101 (2%)
Strand=Plus/Plus
Query 1 ACGAGGCTGGCATGATTGGCTTTGCCCACgagagagagagagagagaAAGATTCCACCT- 59
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ACGAGGCTGGCATGATTGGCTTTGCCCAC------GAGAGAGAGAGAAAGATTCCACCTG 54
Query 60 GGTTGGGTCGT---G--A-AG-AGAAGAAACCGAGGAAGCTCGAAGAAGGACGACGCACA 112
||||||||||| | | || |||||||||||| ||||||||||||| || ||| | |
Sbjct 55 GGTTGGGTCGTGAAGAAAGAGAAGAAGAAACCGAAGAAGCTCGAAGAA-GA--ACG-A-A 109
Query 113 GGAGATTCTTCCTTCCCCCAGATTTTTCGTTTGAAGAAGAAGAAGAATCCAAAACCCAGA 172
|||||||||||||| |||||||||||||||||||||||||| | | ||||| |||
Sbjct 110 GGAGATTCTTCCTTTCCCCAGATTTTTCGTTTGAAGAAGAA-TCG-A---AAAACTTAGA 164
Query 173 TTTTTGGTTTTGCTTTTGGAG-TATTCGAATTTGAAATATCTGAATCTGTTGATTCCCTT 231
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||| | ||
Sbjct 165 TTTTTGGTTTTGCTTTCGGAGTTATTCGAATTTGAAATATCTGAATCTGTTGATT-CATT 223
Query 232 TTTTCTCCACATGAAGCTGTGGTGGTGAAGATTTTCGGAGATTTAGGGTTTCTGAGTTCG 291
| |||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| |
Sbjct 224 TATTCTCCGCATGAAGCTGTGTTGGTGAAGTTTTTCGGAGATTTAGGGTTTCTGAGTT-G 282
Query 292 -TCCTCTTTTGGTT-G-G--T-----GAAGATGAACGTGATGCGTCGTCTCAAGAGCATT 341
||||| ||||||| | | | ||||||||||||||||||||||||||||||||||
Sbjct 283 TTCCTCGTTTGGTTGGTGAATAAAGCGAAGATGAACGTGATGCGTCGTCTCAAGAGCATT 342
Query 342 GCTTCGGGTCGGACCTCGATTTCTTCGGATCCTGGTGGGGACTATGCGTTGAAGAGAGCC 401
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 343 GCTTCGGGTCGGACCTCCATTTCTTCGGATCCTGGTGGGGACTATGCGTTGAAGAGAGCT 402
Query 402 AAGCTGGATCAAGAGAACGACAACTTGTGTGCTGATCCTATGCAGGTTGACCAAAATAGT 461
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 403 AAGCTGGATCAAGAGAACGACAACTTGTGTGTTGATCCAATGCAGGTTGACCAAAATAGT 462
Query 462 TCTTGTTTTGAGATGAAAGCTGACATTTTGTCACATGAAAGTGTTGCTGGAACGTCAAAT 521
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 463 TCTTGTTTTGAGATGAAAGCTGACGTTTTGTCACAAGAAAGTGTTGCTGGAACGTCAAAT 522
Query 522 GTGCCTGCTGCATCAGAAAAAACCGTGGATGATCAGCTTCCCGAAGTTATGATCGATATG 581
|||||||||| ||| |||||| |||||||||||||||||||||| ||||||||||| |||
Sbjct 523 GTGCCTGCTGTATCGGAAAAACCCGTGGATGATCAGCTTCCCGATGTTATGATCGAAATG 582
Query 582 AGGATTAGAGACGAGCGAAATGCCAACCGCGAAGAGAAGGATATGGAAACAACTGTTGTA 641
| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 583 AAGATTAGAGACGAGCGAAATGCCAACCGCGAGGATAAGGATATGGAAACAACTGTTGTA 642
Query 642 AACGGCAGTGGGACCGAAACGGGACAAGTTATTACAACCACAGTCGGGGGTAGAGATGGA 701
||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 643 AACGGCAGTGGGACCGAAACGGGACAAGTTATTACGACGACAGTTGGGGGTAGAGATGGA 702
Query 702 AAGCCAAAGCAGACAATCTCATACATGGCCCAGCGAGTGGTTGGAACCGGCTCATTCGGA 761
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 AAGCCAAAGCAGACTATCTCATACATGGCCCAGCGAGTGGTTGGAACCGGCTCATTCGGA 762
Query 762 GTAGTGTTCCAGGCCAAGTGCTTGGAAACGGGTGAACAAGTTGCAATTAAGAAGGTTCTG 821
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 763 GTAGTGTTCCAGGCCAAGTGCCTGGAAACGGGTGAACAAGTTGCAATTAAGAAGGTTCTG 822
Query 822 CAGGATAAAAGATACAAGAACAGAGAACTTCAGATCATGCGTTTGCAAGACCATCCCAAC 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 CAGGATAAAAGATACAAGAACAGAGAACTTCAGATCATGCGTTTGCAAGACCATCCCAAC 882
Query 882 GTTGTGCGACTGAGGCATTCTTTCTTTTCAACAACTGACAAGGATGAGCTATATCTCAAC 941
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 883 GTTGTGCGGCTGAGGCATTCTTTCTTTTCAACAACTGACAAGGATGAGCTGTATCTCAAC 942
Query 942 CTTGTCCTTGAGTATGTTCCCGAAACTGTATACAGAGCATCTAAGCACTATACCAAAATG 1001
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 943 CTTGTCCTTGAGTATGTTCCCGAAACTGTATACAGAGCATCGAAGCACTATACCAAAATG 1002
Query 1002 AATCAGCATATGCCAATTATCTTTGTTCAGCTCTACACATATCAGATTTGCCGTGCGCTG 1061
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1003 AATCAGCATATGCCAATTATCTTTGTTCAGCTCTATACTTATCAGATTTGCCGTGCGCTG 1062
Query 1062 AACTACTTACATCGCGTGGTTGGGGTGTGTCACCGTGACATCAAGCCACAAAATCTACTG 1121
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1063 AACTACTTACATCGCGTGGTTGGGGTGTGTCACCGTGACATTAAGCCACAAAATCTACTG 1122
Query 1122 GTTAACCCCCAAACTCATCAACTAAAAATTTGCGATTTTGGAAGCGCAAAGATGTTGGTA 1181
||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1123 GTTAATCCCCAAACTCATCAATTAAAAATATGCGATTTTGGAAGCGCAAAGATGTTGGTA 1182
Query 1182 CCCGGTGAACCTAACATATCCTATATATGCTCCCGGTACTACAGGGCCCCAGAACTTATA 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 CCCGGTGAACCTAACATATCCTATATATGCTCCCGGTACTACAGGGCCCCAGAACTTATA 1242
Query 1242 TTTGGGGCGACAGAGTATACCAATGCCATTGACATGTGGTCCGGCGGTTGTGTCATGGCA 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 TTTGGGGCGACAGAGTATACCAATGCCATTGACATGTGGTCCGGCGGTTGTGTCATGGCA 1302
Query 1302 GAGCTTTTACTCGGTCAACCACTGTTTCCCGGGGAAAGTGGCATTGATCAGCTGGTGGAG 1361
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 GAGCTTTTACTTGGTCAACCACTGTTTCCCGGGGAAAGTGGCATTGATCAGCTGGTGGAG 1362
Query 1362 ATAATCAAGATTCTTGGGACACCTACAAGAGAAGAAATACGGTGTATGAATCCCAATTAC 1421
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1363 ATAATCAAGATTCTTGGGACGCCTACAAGAGAAGAAATACGGTGTATGAATCCGAATTAC 1422
Query 1422 ACGGAGTTCAAGTTTCCTCAAATCAAAGCTCACCCGTGGCACAAGATTTTCCACAAGCGA 1481
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 ACAGAGTTCAAGTTTCCTCAAATCAAAGCTCACCCGTGGCACAAGATTTTCCACAAGCGA 1482
Query 1482 ATGCCACCTGAAGCAGTAGACCTTGTCTCGAGACTCCTTCAGTATTCACCAAACCTTCGT 1541
||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 1483 ATGCCACCTGAAGCAGTAGACCTCGTCTCAAGACTCCTTCAGTACTCACCAAACCTTCGT 1542
Query 1542 TGCACTGCTTTGGAAGCTTGTGCACACCCCTTCTTTGATGACTTACGGGATCCGAATGTT 1601
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1543 TGCACTGCATTGGAAGCTTGTGCACACCCCTTCTTTGATGACTTACGGGATCCAAATGTT 1602
Query 1602 TCACTGCCAAATGGAAGAGCACTACCTCCATTGTTTAACTTCACTGCCCAAGAACTTGCG 1661
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1603 TCACTGCCAAATGGAAGAGCACTGCCTCCATTGTTTAACTTCACTGCCCAAGAACTTGCG 1662
Query 1662 GGTGCATCAACAGAGCTGCGACAGCGTCTAATTCCAGCGCATTGCCAGGGAACGGGAAGT 1721
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1663 GGTGCATCAACAGAGCTGCGACAGCGTCTAATTCCAGCACATTGCCAGGGAACGGGAAGT 1722
Query 1722 AGCTCTTAGGATCATTTATAGTGTGTCCAAATCCAGCTTTCTTTCTCTCCCTCTATTTAC 1781
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1723 AGCTCTTAGGATCATTTATAGCGTGTCCAAATCCAGCTTTCTTTCTCTCCCTCTATTTAC 1782
Query 1782 TGCAGTGTGTACATCAATTTTGAACCACTTCTGCTTCCAAGCTTT-GTTGCCGGAGGAGA 1840
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1783 TGCAGTGTGTACATCAATTTTGAACCACTTCTGCTTCCAAGCTTTTGTCGCCGGAGGAGA 1842
Query 1841 G-TCTGGAAATCTGCACGCCGGGACCCGA-GTTGATGTGAAATAACTGTGTTCATGGAGC 1898
| | |||||||||| ||||||||||| || | | ||||||||||||| | ||||| |||
Sbjct 1843 GAT-TGGAAATCTGTACGCCGGGACCTGATGAGG-TGTGAAATAACTGGGGTCATGAAGC 1900
Query 1899 TTCTTCTTCTTCT---GACTAGCCTCTCTCTCAATTTGCTCTCCGtttgtttttttcacc 1955
||||||||||||| |||| || | |||||||||||||| ||| || ||| ||||||||
Sbjct 1901 TTCTTCTTCTTCTTCTGACTGGCTTTTCTCTCAATTTGCTATCC-TT-GTTATTTTCACC 1958
Query 1956 ttcactttcatttttttgtttttttctttCACAAATCTGACCCCC-TTATATGTTTGGTG 2014
||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||
Sbjct 1959 TTCACTTTCATTTTTTTGTTTTTTT-TTCCACAAATCTGACCCCCCTTATATGTTTGGTG 2017
Query 2015 TATCATTTTTATATGTTTGTAATCCATCAAGA-CATTT-CCCTTGCCCTAATATCACAAG 2072
|||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| ||||
Sbjct 2018 TATCATTTTTATGTGTTTGTAATCCATCAAGATCATTTTCCCTTGCCCTAATATTGCAAG 2077
Query 2073 C 2073
|
Sbjct 2078 C 2078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102760515615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5