BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490501
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00680.1 | Symbols: ADF8 | actin depolymerizing factor 8 | c... 815 0.0
AT1G01750.1 | Symbols: ADF11 | actin depolymerizing factor 11 |... 508 2e-143
> AT4G00680.1 | Symbols: ADF8 | actin depolymerizing factor 8 |
chr4:279596-280699 REVERSE LENGTH=698
Length=698
Score = 815 bits (441), Expect = 0.0
Identities = 492/517 (95%), Gaps = 2/517 (0%)
Strand=Plus/Plus
Query 1 CCCCACAACCCTCCTCACTCTTCCCTATCCCCTCCA-TTTTCCCAATCACCAAACACAGG 59
|||| ||| ||||||||||||||||||||| || || |||||||||||| |||||||| |
Sbjct 5 CCCCCCAATCCTCCTCACTCTTCCCTATCCTCTTCATTTTTCCCAATCATCAAACACAAG 64
Query 60 ATTAGAGTTCGATTTCTCCAAAGAAAACATGGCTAATTCAGCGTCTGGGATGCATGTGAA 119
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 65 ATTAGAGTTCGA-TTCTCCAAAGAAAATATGGCTAATTCAGCGTCTGGGATGCATGTGAA 123
Query 120 TGATGAATGCAAGCTTAAGTTCTTGGAGTTGAAAGCAAAGAGAACTTACAGGTTTATTGT 179
||||||||||||| |||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 124 TGATGAATGCAAGATTAAGTTCTTAGAGTTGAAAGCAAAGAGGACTTACAGGTTCATTGT 183
Query 180 GTTCAAAATTGATGAGAAGGCTCAGCAAGTCCAAATAGAAAAGCTTGGGAATCCAGAAGA 239
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 184 GTTCAAAATTGATGAGAAGGCACAGCAAGTGCAAATAGAAAAGCTTGGGAATCCAGAAGA 243
Query 240 AACTTACGACGATTTTACCAGCGCTATCCCTGATGACGAATGTCGATACGCAGTCTATGA 299
|||||||||||||||||||||| ||||||| ||||||||||| |||||||| ||||| ||
Sbjct 244 AACTTACGACGATTTTACCAGCTCTATCCCCGATGACGAATGCCGATACGCTGTCTACGA 303
Query 300 TTTTGATTTCACCACAGAGGACAATTGTCAGAAGAGCAAGATCTTTTTCATCGCGTGGTC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 TTTTGATTTCACCACAGAGGACAATTGTCAGAAGAGCAAGATCTTTTTCATCGCGTGGTC 363
Query 360 ACCTGATACATCAAGAGTTCGGAGTAAGATGTTGTATGCAAGCTCAAAAGACAGGTTCAA 419
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 ACCTGATACATCGAGAGTTCGGAGTAAGATGTTGTATGCAAGCTCAAAAGACAGGTTCAA 423
Query 420 GAGAGAAATGGATGGAATTCAAGTTGAATTGCAAGCAACTGATCCAAGCGAGATGAGCCT 479
|||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 424 GAGAGAAATGGAAGGAATTCAAGTTGAATTGCAAGCAACTGATCCTAGTGAGATGAGCCT 483
Query 480 TGACATCATCAAAGGACGACTCAATCTCTGAACAACA 516
||||||||||||||||||||||||||||||| |||||
Sbjct 484 TGACATCATCAAAGGACGACTCAATCTCTGAGCAACA 520
> AT1G01750.1 | Symbols: ADF11 | actin depolymerizing factor 11
| chr1:275366-276310 FORWARD LENGTH=769
Length=769
Score = 508 bits (275), Expect = 2e-143
Identities = 383/435 (88%), Gaps = 7/435 (2%)
Strand=Plus/Plus
Query 81 AGAAAAC-ATGGCTAATTCAGCGTCTGGGATGCATGTGAATGATGAATGCAAGCTTAAGT 139
||| ||| |||||||||||||||||||||||||| || | ||||| |||||||| ||||
Sbjct 155 AGAGAACAATGGCTAATTCAGCGTCTGGGATGCACGTTAGCGATGAGTGCAAGCTCAAGT 214
Query 140 TCTTGGAGTTGAAAGCAAAGA-GAACTTACAGGTTTATTGTGTTCAAAATTGATGAGAAG 198
|||||||||| |||||||||| |||| || ||||| ||||||||||||||||||||||||
Sbjct 215 TCTTGGAGTTAAAAGCAAAGAGGAAC-TATAGGTTCATTGTGTTCAAAATTGATGAGAAG 273
Query 199 GCTCAGCAAGTCCAA-ATAGAAAAGCTTGGGAATCCAGAAGAAACTTACGACGATTTTAC 257
||||||||||| | ||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 274 GCTCAGCAAGTT-ATGATAGACAAGCTTGGGAATCCAGAAGAAACTTACGAAGATTTCAC 332
Query 258 CAGCGCTAT-CCCTGATGACGAATGTCGATACGCAGTCTATGATTTTGATTTCACCACAG 316
||| |||| ||| || || || || ||||| || |||||||| | ||||||||||||
Sbjct 333 CAGATCTATTCCC-GAGGATGAGTGCCGATATGCTGTCTATGACTATGATTTCACCACCC 391
Query 317 AGGACAATTGTCAGAAGAGCAAGATCTTTTTCATCGCGTGGTCACCTGATACATCAAGAG 376
|| || || ||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 392 CTGAGAACTGCCAGAAGAGCAAAATCTTTTTCATCGCATGGTCACCTGATACATCAAGAG 451
Query 377 TTCGGAGTAAGATGTTGTATGCAAGCTCAAAAGACAGGTTCAAGAGAGAAATGGATGGAA 436
| |||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| |
Sbjct 452 TGAGGAGTAAGATGTTGTATGCAAGCTCAAAGGACAGGTTCAAGAGGGAATTGGATGGGA 511
Query 437 TTCAAGTTGAATTGCAAGCAACTGATCCAAGCGAGATGAGCCTTGACATCATCAAAGGAC 496
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||
Sbjct 512 TTCAAGTTGAATTGCAAGCAACAGATCCTAGCGAGATGAGCCTCGACATCATCAAGGGAC 571
Query 497 GACTCAATCTCTGAA 511
|| ||||||||||||
Sbjct 572 GAGTCAATCTCTGAA 586
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29638146730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5