BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490504
Length=2687
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00660.2 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:2... 3879 0.0
AT4G00670.1 | Symbols: | Remorin family protein | chr4:278316-... 446 7e-124
> AT4G00660.2 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:274257-278737
FORWARD LENGTH=2804
Length=2804
Score = 3879 bits (2100), Expect = 0.0
Identities = 2543/2742 (93%), Gaps = 90/2742 (3%)
Strand=Plus/Plus
Query 1 ATTGACCCTTTTGA--TCTCTC--TCTCG--TT-TTCCTCGCGTGGACCTCTTTCGAAAA 53
|||||||||||||| |||||| ||||| || |||||||||||||||| |||||||||
Sbjct 52 ATTGACCCTTTTGATCTCTCTCTGTCTCGCTTTCTTCCTCGCGTGGACCTTTTTCGAAAA 111
Query 54 ATATCAATCCCCGAATTTTGCTTGATTTTGGAGTT-TAAA-TTCCAGATCTGCTACTCTT 111
||||||||||| |||||| |||| |||||||| || |||| | ||||||||||||||||
Sbjct 112 ATATCAATCCCAGAATTTCGCTTCATTTTGGA-TTATAAACTCCCAGATCTGCTACTCTC 170
Query 112 TATCTTCGATTCTGTGATTTTTACAAACCCTAGATTTCTCCGGAAGAGTTTA---TTTTC 168
||||| ||||| |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 171 TATCTCCGATTTTGTGATTTTT-CAAACCCTAGATTTCTCCGGAAGAGTTTATTTTTTTC 229
Query 169 -C-G----T------A-AtttttttttCAAAATTCCGACATTACCCTAGGTTGTGTATTA 215
| | | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 TCTGTAACTAAACCGAGATTTTTTTTTCAAAATTCCGACATTACCCTAGGTTGTGTATTA 289
Query 216 CCGTAGGAAAA-CCTAGTTCCTGTTTGGTGTTCCTT-GTGTACAGA-----TCC-----C 263
||||| ||||| |||||||||| |||||| || ||| ||||||||| ||| |
Sbjct 290 CCGTA-GAAAACCCTAGTTCCTTTTTGGTATT-CTTGGTGTACAGATCCCTTCCTTAGTC 347
Query 264 ----TTTTTGGTTATTAGTGTTTAGAGGTTTGTGATGAACAATCGAGGAAGGTATCCTCC 319
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 348 AGAGTTTTTGGTTATTAGTGTTTAGAGGTTTGTGATGAACAATCGAGGAAGGTACCCTCC 407
Query 320 TGGAATTGGCGCTGGCCGTGGAGCCAGTAACCCTAACCCTAATCACCAATCACGGCCGGG 379
||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||
Sbjct 408 TGGAATTGGCGCTGGCCGTGGAGCCTTTAACCCTAACCCTAATTACCAATCACGGTCGGG 467
Query 380 TTATCAACAACAACAACCGCCGCCACAATACGTTCAACGCGGTAGTTACGCTCAGAATTA 439
|||| |||||||| |||||||| ||||||||||||||||||| ||||||||||||| |
Sbjct 468 TTAT---CAACAACATCCGCCGCCCCAATACGTTCAACGCGGTAATTACGCTCAGAATCA 524
Query 440 CCAACAACAGTTTCAACAAGCGACGTCTCAGCCGCATCAATACCAACAG---CAGCAGCA 496
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 525 CCAACAACAGTTTCAACAAGCGCCGTCTCAGCCGCATCAATACCAACAGCAACAGCAGCA 584
Query 497 ACAACAACAATGGCTTCGAAGAGCTCAGATCCCCGGTGGTAACAGTAACAGTAACGGTGA 556
||||||||||||||||||||||| |||||||||| || | ||||||||||||||||
Sbjct 585 ACAACAACAATGGCTTCGAAGAGGTCAGATCCCC---GG---CGGTAACAGTAACGGTGA 638
Query 557 CGCTGTTGTAGAAGTTGAGAAAACTGTTCAGTCCGAAGTTATCGACCCAAATTCGGAAGA 616
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 639 CGCTGTTGTAGAAGTTGAGAAAACTGTTCAATCCGAAGTTATCGACCCAAACTCGGAAGA 698
Query 617 TTGGAAGGCCAGGCTAAAACTACCTGCACCTGATACTCGCTACAGAACAGAGGATGTGAC 676
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 699 TTGGAAAGCAAGGCTAAAACTACCTGCACCTGATACTCGATACAGAACAGAGGATGTGAC 758
Query 677 AGCCACCAAAGGGAATGAGTTTGAAGATTATTTTTTGAAACGAGAGCTTCTCATGGGAAT 736
||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 759 AGCCACCAAAGGGAACGAGTTTGAAGATTACTTTTTGAAACGGGAGCTTCTCATGGGAAT 818
Query 737 ATATGAGAAGGGTTTTGAAAGACCTTCTCCTATTCAGGAAGAGAGTATTCCAATTGCCTT 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 ATATGAGAAGGGTTTTGAAAGACCTTCTCCTATTCAGGAAGAGAGTATTCCAATTGCCTT 878
Query 797 GACTGGTAGAGATATCCTTGCCAGAGCAAAGAACGGGACTGGAAAGACCGCCGCCTTTTG 856
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 AACTGGTAGAGATATCCTTGCCAGAGCAAAGAACGGGACTGGAAAGACCGCCGCCTTTTG 938
Query 857 TATTCCTGTCTTGGAAAAAATTGACCAAGATAACAACGTTATTCAAGCTGTTATAATTGT 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 TATTCCTGTCTTGGAAAAAATTGACCAAGATAACAACGTTATTCAAGCTGTTATAATTGT 998
Query 917 TCCAACTCGAGAGTTAGCCCTTCAGACATCACAGGTGTGTAAGGAGCTGGGTAAGCATTT 976
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 999 TCCGACTCGAGAGTTAGCCCTTCAGACATCACAGGTCTGTAAAGAGCTGGGTAAGCATTT 1058
Query 977 GAAGATTCAAGTCATGGTGACCACTGGGGGCACCAGTCTGAAAGACGATATCATGCGTTT 1036
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1059 GAAGATTCAAGTCATGGTGACCACTGGTGGCACCAGTCTGAAAGACGATATCATGCGTTT 1118
Query 1037 GTATCAGCCTGTTCATTTACTGGTAGGAACTCCTGGGAGAATTCTGGATCTTGCCAAGAA 1096
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1119 GTATCAGCCTGTTCATTTACTGGTAGGAACTCCTGGGAGAATTCTGGATCTTACCAAGAA 1178
Query 1097 AGGTGTTTGTGTTTTAAAAGATTGTTCAGTGCTTGTTATGGATGAGGCTGATAAGCTTTT 1156
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1179 AGGTGTTTGTGTTTTAAAAGATTGTTCGGTGCTTGTTATGGATGAGGCTGACAAGCTTTT 1238
Query 1157 GTCTCAAGAGTTCCAACCTTCAGTGGAACATTTGATTAGCTTTCTTCCAGAAAATCGTCA 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1239 GTCTCAAGAGTTCCAACCTTCAGTGGAACATTTGATTAGCTTTCTTCCAGAAAGTCGTCA 1298
Query 1217 GATTTTGATGTTCTCAGCCACGTTCCCTGTCACTGTCAAGGATTTTAAGGATAGATTTTT 1276
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
Sbjct 1299 GATTTTGATGTTCTCAGCCACCTTCCCTGTCACTGTCAAGGATTTTAAGGATAGGTTTCT 1358
Query 1277 GACGAATCCTTATGTCATCAATCTCATGGATGAACTTACACTCAAGGGAATCACCCAATT 1336
|||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 1359 GACGAATCCTTACGTCATCAATCTCATGGATGAACTTACGCTCAAGGGTATTACCCAATT 1418
Query 1337 CTATGCTTTCGTTGAAGAAAGACAGAAAATTCATTGCTTGAATACACTATTCTCCAAGCT 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1419 CTATGCTTTCGTTGAAGAAAGACAGAAAATTCATTGCTTGAATACACTATTCTCCAAGCT 1478
Query 1397 GCAAATTAACCAATCAATCATATTCTGCAATTCTGTAAATCGTGTGGAGCTCTTAGCTAA 1456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1479 GCAAATTAACCAATCAATCATATTCTGCAATTCTGTAAATCGTGTGGAGCTCTTAGCCAA 1538
Query 1457 GAAAATCACAGAACTTGGGTATTCATGCTTTTACATCCATGCAAAGATGCTTCAAGACCA 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 GAAAATCACAGAACTTGGGTATTCATGCTTTTACATCCATGCAAAGATGCTTCAAGACCA 1598
Query 1517 CCGAAACAGAGTCTTCCATGACTTTCGCAATGGTGCATGCCGGAATCTTGTGTGTACTGA 1576
|||||||||||| ||||||||||| || |||||||||||||| ||||| |||||||||||
Sbjct 1599 CCGAAACAGAGTGTTCCATGACTTCCGGAATGGTGCATGCCGTAATCTCGTGTGTACTGA 1658
Query 1577 CTTGTTCACACGTGGGATTGACATTCAAGCAGTCAATGTGGTGATAAACTTTGATTTCCC 1636
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1659 CTTGTTCACACGTGGTATTGACATTCAAGCCGTCAATGTGGTGATAAACTTTGATTTCCC 1718
Query 1637 AAAGAATGCAGAAACTTATCTCCATAGGGTTGGACGATCAGGAAGGTTTGGCCATCTTGG 1696
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1719 AAAGAATGCTGAAACTTATCTCCATAGGGTTGGACGATCAGGAAGGTTTGGCCATCTTGG 1778
Query 1697 TCTAGCTGTGAATCTTATCACTTATGAAGACCGATTTAACCTTTACCGGATTGAGCAAGA 1756
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1779 TCTAGCTGTGAATCTTATCACCTATGAAGATCGATTTAACCTTTACCGGATTGAGCAAGA 1838
Query 1757 ACTTGGAACAGAGATCAAGCAAATTCCTCCACATATCGATCAGGCAATTTATTGCCAATA 1816
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1839 GCTTGGAACGGAGATCAAGCAAATTCCTCCACATATCGATCAGGCAATTTATTGCCAATA 1898
Query 1817 ACCAAGGGTTGGTTGAAGCCATGGTTAGACAGTTGTCTTATCTAGCCATGCAGGACAACG 1876
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1899 ACCAAGGGTTGGTTGAAGCCATGGTTAGACAGTTGTCTTATCTAGCCATGCAGGACAAGG 1958
Query 1877 ACAACCCAAAAAGGCTTCACATTCTGCCTCtt---t---t--t-ttt----CTGCGTCAT 1923
|||||||||||||||||||||||||||||||| | | | ||| ||||||| |
Sbjct 1959 ACAACCCAAAAAGGCTTCACATTCTGCCTCTTACCTCCATAATGTTTTTTTCTGCGTCTT 2018
Query 1924 TGGGATTCCTTTATATCTAAAGATTAACTATATTCAAGGCTAGAAGGTTTGAAATGCCGG 1983
|||||||||||||| | ||||||||||||||| ||||||||| |||||||||||| ||||
Sbjct 2019 TGGGATTCCTTTATTTTTAAAGATTAACTATAGTCAAGGCTAAAAGGTTTGAAATACCGG 2078
Query 1984 GTAGTATTGGAAACGTGAAGCCTTTTATTTAGTTTTAACAAGTCGTTTGATACTAT-GTT 2042
|||||||| ||| |||||| ||||||||||||||||||||||||||||| |||| |||
Sbjct 2079 GTAGTATTACAAAAGTGAAGTCTTTTATTTAGTTTTAACAAGTCGTTTGAG-CTATTGTT 2137
Query 2043 TCTTTCTATGCTGTAGACTGAT-AGTGGTTACAGTGTTGTGATGCGTCTTCAAGGAGCTG 2101
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2138 TCTTTCTATGCCGTAGACTGATCAGTGGTTACAGTGTTGTGATGCGTCTTCAAGGAGCTG 2197
Query 2102 TGGTTTCATGACTCTTTTCATGATCCTTTTCCAGCTTTCCAACTCCAATAATAAGTCTT- 2160
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 2198 TGGTTTCATGACTCTTT-CATGATCCTTTTCCAGCTTTCCAACTTCAATAATAAGTCTTT 2256
Query 2161 GAGACCTTAAGATGATATTTTCCCTTTT--CCATTTTCCCAGGTTGCAGATTTTATATTA 2218
||||||||||||||| ||||||| |||| |||||| | |||||||| |||||||| |||
Sbjct 2257 GAGACCTTAAGATGAGATTTTCCTTTTTTTCCATTTACACAGGTTGCTGATTTTATTTTA 2316
Query 2219 GCATGTTTTGTGTTGTCAATAGGTTGATTAGTTCAGGATTTGGTCTGAGGACA--G---- 2272
|||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
Sbjct 2317 GCATGTTTTGTGTTGTCAATAGGTAGATTAGTTCAGGATTTGGTCTGTGGACAATGGACA 2376
Query 2273 -TGAATTTAGCAGTCTCTTGTTTCT-TGACCAACACAAGCAAAACACACAACATATAAAA 2330
||||||| ||| |||||||||| | ||| ||||||||||||||||||||||||| ||||
Sbjct 2377 ATGAATTTTGCACTCTCTTGTTT-TATGAGCAACACAAGCAAAACACACAACATACAAAA 2435
Query 2331 GATACAAGTATGAACATAGGATAGTGGAGATAGGTGATAATCTGTATCACAGGTTAGTGC 2390
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2436 GATACAAGTATGAACATAGGATACCGGAGATAGGTGATAATCTGTATCACAGGTTAGTGC 2495
Query 2391 TGATCTCAGAAGCAGCTAAAAGATGACTTCTTGGGTATCTGTCCGGCTGCTTGAAGCCTA 2450
||||||||||||||||| |||||||||||||||||||||| ||| || ||||||| ||||
Sbjct 2496 TGATCTCAGAAGCAGCTCAAAGATGACTTCTTGGGTATCTTTCCTGCGGCTTGAAACCTA 2555
Query 2451 GCAGCTTCTTCTTCCGCATTCA-GAATCTCTTGAGCCCGTCTGGTTTGAACATTTGCTTT 2509
||||| |||||||||||| || | |||||||||||||||||||||||||||| ||| ||
Sbjct 2556 GCAGCAGCTTCTTCCGCAT-CAAGGATCTCTTGAGCCCGTCTGGTTTGAACATCTGCCTT 2614
Query 2510 CTT-TTCTTGTGCCTTTGCATGAACTGCTGCTTTTTAGCTCCTTAGTTTCTCAGATTTCT 2568
||| || ||||||||||||||||||||| ||||||| | |||||||||||||||||||||
Sbjct 2615 CTTCTT-TTGTGCCTTTGCATGAACTGCCGCTTTTTCGTTCCTTAGTTTCTCAGATTTCT 2673
Query 2569 CCATCTTCTTACTGTCCATTTTCCGCTGTAGAAAACAACAAtttttttgtttgtttgttt 2628
||||||||||||||||||| ||||||||||||||||||||||||||| || ||| ||||
Sbjct 2674 CCATCTTCTTACTGTCCATCTTCCGCTGTAGAAAACAACAATTTTTTCGTCTGTATGTTA 2733
Query 2629 gttctttgACAACATGAGATTTCATGTTTTATAGTCTTGTAC 2670
|||||||||| |||||| || |||||||| ||||||||||||
Sbjct 2734 GTTCTTTGACGACATGAAATGTCATGTTTCATAGTCTTGTAC 2775
> AT4G00670.1 | Symbols: | Remorin family protein | chr4:278316-279186
REVERSE LENGTH=506
Length=506
Score = 446 bits (241), Expect = 7e-124
Identities = 297/323 (92%), Gaps = 7/323 (2%)
Strand=Plus/Minus
Query 2277 TTTAGCAGTCTCTTGTTTCT-TGACCAACACAAGCAAAACACACAACATATAAAAGATAC 2335
||| ||| |||||||||| | ||| ||||||||||||||||||||||||| |||||||||
Sbjct 506 TTT-GCACTCTCTTGTTT-TATGAGCAACACAAGCAAAACACACAACATACAAAAGATAC 449
Query 2336 AAGTATGAACATAGGATAGTGGAGATAGGTGATAATCTGTATCACAGGTTAGTGCTGATC 2395
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 448 AAGTATGAACATAGGATACCGGAGATAGGTGATAATCTGTATCACAGGTTAGTGCTGATC 389
Query 2396 TCAGAAGCAGCTAAAAGATGACTTCTTGGGTATCTGTCCGGCTGCTTGAAGCCTAGCAGC 2455
|||||||||||| |||||||||||||||||||||| ||| || ||||||| |||||||||
Sbjct 388 TCAGAAGCAGCTCAAAGATGACTTCTTGGGTATCTTTCCTGCGGCTTGAAACCTAGCAGC 329
Query 2456 TTCTTCTTCCGCATTCA-GAATCTCTTGAGCCCGTCTGGTTTGAACATTTGCTTTCTT-T 2513
|||||||||||| || | |||||||||||||||||||||||||||| ||| ||||| |
Sbjct 328 AGCTTCTTCCGCAT-CAAGGATCTCTTGAGCCCGTCTGGTTTGAACATCTGCCTTCTTCT 270
Query 2514 TCTTGTGCCTTTGCATGAACTGCTGCTTTTTAGCTCCTTAGTTTCTCAGATTTCTCCATC 2573
| ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||
Sbjct 269 T-TTGTGCCTTTGCATGAACTGCCGCTTTTTCGTTCCTTAGTTTCTCAGATTTCTCCATC 211
Query 2574 TTCTTACTGTCCATTTTCCGCTG 2596
|||||||||||||| ||||||||
Sbjct 210 TTCTTACTGTCCATCTTCCGCTG 188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133444068380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5