BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490506
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00620.1 | Symbols: | Amino acid dehydrogenase family prote... 2134 0.0
AT4G00600.1 | Symbols: | Amino acid dehydrogenase family prote... 981 0.0
> AT4G00620.1 | Symbols: | Amino acid dehydrogenase family protein
| chr4:259028-261019 REVERSE LENGTH=1551
Length=1551
Score = 2134 bits (1155), Expect = 0.0
Identities = 1431/1554 (92%), Gaps = 59/1554 (4%)
Strand=Plus/Plus
Query 1 TGAACTTAAACCCTTGTTGTA-ATTAAAAGAAGAAACCCTAGTCGTCTCTCCGACTCTCC 59
||||||||||||||||||| | || |||||||||||||||| ||||||||||||||
Sbjct 9 TGAACTTAAACCCTTGTTG-ATATCAAAAGAAGAAACCCTA---GTCTCTCCGACTCT-- 62
Query 60 ACCGTAGACGACGAAGTCATCTTCTTCAATTCATCGTCTCTTCTCTGCTCTG----G--- 112
|||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 63 -CCGTAGACGACGAAGTTATCTTCTTCAATTCATCGTCTCTTCTCTGCTCTGCTTTGCTC 121
Query 113 -A-AT-ACAAATTAAAAGACCT-AATAGTCTTCCTGTCTCCATCATTACCTTCTTCCTCT 168
| || |||||||||||||| | | ||||||||||||||||| ||||||||||||||| |
Sbjct 122 TAGATCACAAATTAAAAGACTTCATTAGTCTTCCTGTCTCCACCATTACCTTCTTCCTTT 181
Query 169 TTAACTCAGCCACAACGAGCAGACTACTGTTCTGTTTTCCTTGTATAAAAATGGCGTCGT 228
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 182 TTAACTCAGCCACGACGAGCAGACTATTGTTCTGTTTTCCTTGTATAAAAATGGCGTCGA 241
Query 229 TGATGTTTACCGATTGCTCGTCCTCCACGACGTCCCGTCTCATCCATTTGAACCGTCGCA 288
||||||||||||||||||| ||| |||||||||| |||||||||||||||||||| |||
Sbjct 242 TGATGTTTACCGATTGCTCCTCCACCACGACGTCGCGTCTCATCCATTTGAACCGAAGCA 301
Query 289 CCGGTACTTTCCTCCTCCGTCAATGCGTCGTCCAACTCCGTTTACAGACCACTGCTTCTG 348
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 302 GCGGTACTTTCCTCCTCCGTCAATGCGTCGGCCAACTCCGTTTACAGACCACTGCTTCTG 361
Query 349 GCCGTGGCTGCTGCATTCGCTCCTCTTCTTCTCCCATTTCTGCCATTTCCGCTGATACAA 408
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 362 GCCGTGGCTGCTGCATTCGCTCCTCTTCTTCTCCCATTTCTTCCATTTCCGCTGATACAA 421
Query 409 AATCATCAGAGGGTGTCGCAATTGTAATTGATGGAAAGGCTGTGGCTAAAAAGATTAGAG 468
||||| ||||||| |||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 422 AATCA---GAGGGTGGCGCAATTGTAATAGATGGAAAGGCTGTGGCAAAAAAGATTAGAG 478
Query 469 ATGAAATCACAATCGAAGTTTCAAGAATGAAGGAATCTATTGGTGTGATTCCTGGTTTAG 528
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 479 ATGAAATCACAATTGAAGTTTCAAGAATGAAGGAATCAATTGGTGTGATTCCTGGTTTAG 538
Query 529 CAGTAATCCTTGTTGGAGACAGAAAGGATTCTGCAACTTATGTGAGGAACAAGAAGAAAG 588
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 539 CAGTAATCCTTGTTGGTGACAGAAAAGATTCTGCAACTTATGTGAGGAACAAGAAGAAAG 598
Query 589 CTTGTGACTCCGTTGGAATTAAATCGTTCGAAATTTGTCTAGCTGAAGATTCATCAGAAG 648
||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct 599 CTTGTGACTCCGTTGGAATCAAATCGTTCGAAGTTCGTCTAGCTGAAGATTCATCAGAAG 658
Query 649 AAGAGGTGTTGAAATCTGTCTCAGGCTTCAATGATGATCCTTCTGTCCATGGAATCCTTG 708
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 659 AAGAGGTGTTGAAATCTGTATCAGGATTCAATGATGATCCTTCTGTCCATGGAATCCTTG 718
Query 709 TTCAGTTGCCTCTACCATCGCACATGGATGAACAGAACATATTAAATGCGGTTAGTATAG 768
||||||||||||| |||||||| |||||||||||||||||| | ||||||||||||||||
Sbjct 719 TTCAGTTGCCTCTGCCATCGCATATGGATGAACAGAACATACTGAATGCGGTTAGTATAG 778
Query 769 AGAAAGATGTTGATGGGTTTCACCCGCTAAATATTGGACGGCTTGCCATGCGTGGAAGAG 828
||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 779 AGAAAGATGTTGACGGATTTCATCCGCTAAATATTGGACGGCTTGCCATGCGTGGAAGAG 838
Query 829 AACCCTTGTTCGTTCCGTGTACTCCAAAAGGATGCATCGAGTTGTTGCATAGATATAACA 888
||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 839 AACCCTTATTCGTTCCTTGTACTCCAAAAGGATGCATTGAGTTGTTGCATAGATACAACA 898
Query 889 TTGAAATCAAAGGAAAAAGAGCGGTAGTTATTGGAAGGAGTAACATTGTTGGTATGCCAG 948
|||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 899 TTGAAATCAAAGGAAAGAGAGCGGTTGTTATCGGAAGGAGTAACATTGTCGGTATGCCAG 958
Query 949 CTGCTCTGTTACTGCAGAGGGAGGATGCAACCGTTAGCATTATCCATTCAAGAACCAAGA 1008
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CTGCTCTTTTACTGCAGAGGGAGGATGCAACCGTTAGCATTATCCATTCAAGAACCAAGA 1018
Query 1009 ACCCCGAAGAAATCACAAGAGAAGCTGATATTATAATCGCAGCTGTTGGACAACCAAACA 1068
|||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1019 ACCCTGAAGAAATCACAAGAGAAGCTGATATTATAATCTCAGCTGTTGGACAGCCAAACA 1078
Query 1069 TGGTCAGAGGAAGCTGGATAAAACCGGGCGCAGTCATCATTGATGTTGGGATTAATCCTG 1128
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1079 TGGTCAGAGGAAGCTGGATAAAACCGGGCGCAGTCCTCATCGATGTTGGGATTAATCCTG 1138
Query 1129 TTGAGGATCCAAGTGCTGCCCGTGGATATCGATTGGTTGGAGACATTTGCTATGAGGAGG 1188
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1139 TTGAGGATCCAAGTGCTGCGCGTGGATATCGATTGGTTGGAGACATTTGCTACGAGGAGG 1198
Query 1189 CTTGCAAAGTTGCATCAGCCATCACGCCTGTTCCTGGTGGTGTAGGACCAATGACCATAG 1248
|| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1199 CTAGCAAAGTTGCATCAGCCATCACACCTGTTCCTGGCGGTGTAGGACCAATGACCATAG 1258
Query 1249 CCATGCTCCTATCCAACACTTTAACATCAGCTAAGAGGATTCACAACTTCCAGTGACGTC 1308
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CCATGCTTCTATCCAACACTTTAACATCAGCTAAGAGGATTCACAACTTCCAGTGACGTC 1318
Query 1309 ACTTAAAA-GAAGATTGCTGGCCTTTTGGGAA---------T--T--T-T-TT----GAA 1348
|||||||| ||||||||||||||||||||||| | | | | || |||
Sbjct 1319 ACTTAAAAAGAAGATTGCTGGCCTTTTGGGAAACAAACAAATCGTACTCTGTTTTTTGAA 1378
Query 1349 GCCAATGGTTTACTTTGCTCTTTAAAGAAA-TTATAGTTTTGTTCTATGAAACAAAACAT 1407
||||||| ||||||||| |||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1379 GCCAATGATTTACTTTGGTCTTTAAAGAAAGTTATCGTTTTGTTCTATGAAACAAAACAT 1438
Query 1408 GTAGTTTT-AACTCACATAAATTGTCT--------GT----CTCTTCTTACTATTT-GA- 1452
|||||||| || ||||||||||||||| || |||||||| ||||| ||
Sbjct 1439 GTAGTTTTTAAGTCACATAAATTGTCTTCAACATTGTTTGTCTCTTCTTGGTATTTTGAG 1498
Query 1453 TCCAGAACTAGTTTTAACTTATCTCAGATATGATATATCCCAGCCTCACCCATC 1506
|| |||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1499 TC-AGAACTAGTTTTAACTTATCCCAGCTATGATATATCCCAGCCTCACCCATC 1551
> AT4G00600.1 | Symbols: | Amino acid dehydrogenase family protein
| chr4:255320-256610 REVERSE LENGTH=933
Length=933
Score = 981 bits (531), Expect = 0.0
Identities = 628/676 (93%), Gaps = 2/676 (0%)
Strand=Plus/Plus
Query 630 GCTGAAGATTCATCAGAAGAAGAGGTGTTGAAATCTGTCTCAGGCTTCAATGATGATCCT 689
|||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||
Sbjct 259 GCTGAAGATTCATCAGAAGAAGAGGTGTTGAAATATGTATCAGGATTCAATGATGATCCT 318
Query 690 TCTGTCCATGGAATCCTTGTTCAGTTGCCTCTACCATCGCACATGGATGAACAGAACATA 749
||||| || ||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 319 TCTGTTCACGGAGTCCTTGTTCAGTTGCCTCTACCATCGCATATGGATGAACAGAACATA 378
Query 750 TTAAATGCGGTTAGTATAGAGAAAGATGTTGATGGGTTTCACCCGCTAAATATTGGACGG 809
|| |||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 379 TTGAATGCGGTTAGTATAGAGAAGGACGTTGATGGATTTCACCCGCTAAATATTGGACGG 438
Query 810 CTTGCCATGCGTGGAAGAGAACCCTTGTTCGTTCCGTGTACTCCAAAAGGATGCATCGAG 869
|||||||||||||| |||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 439 CTTGCCATGCGTGGTAGAGAACCTTTATTCGTTCCATGTACTCCAAAAGGATGCATCGAG 498
Query 870 TTGTTGCATAGATATAACATTGAAATCAAAGGAAAAAGAGCGGTAGTTATTGGAAGGAGT 929
|||||||| ||||| ||||||||| ||||||| |||||||| || |||||||||||||||
Sbjct 499 TTGTTGCACAGATACAACATTGAATTCAAAGGCAAAAGAGCAGTTGTTATTGGAAGGAGT 558
Query 930 AACATTGTTGGTATGCCAGCTGCTCTGTTACTGCAGAGGGAGGATGCAACCGTTAGCATT 989
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 559 AACATTGTTGGTATGCCAGCTGCTCTGTTGCTGCAGAAGGAGGATGCAACCGTTAGCATT 618
Query 990 ATCCATTCAAGAACCAAGAACCCCGAAGAAATCACAAGAGAAGCTGATATTATAATCGCA 1049
|||||||||||||||| |||||| |||||| |||||||| |||||||||| ||||| ||
Sbjct 619 ATCCATTCAAGAACCATGAACCCTGAAGAACTCACAAGACAAGCTGATATCCTAATCTCA 678
Query 1050 GCTGTTGG-ACAACCAAACATGGTCAGAGGAAGCTGGATAAAACCGGGCGCAGTCATCAT 1108
|||||||| | ||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 679 GCTGTTGGGA-AACCAAACATGGTCAGAGGAAGCTGGATAAAACCGGGTGCAGTCCTCAT 737
Query 1109 TGATGTTGGGATTAATCCTGTTGAGGATCCAAGTGCTGCCCGTGGATATCGATTGGTTGG 1168
|||||||||||||| |||||||||||||||||||||||| ||||| | || ||||||||
Sbjct 738 CGATGTTGGGATTAAACCTGTTGAGGATCCAAGTGCTGCCGGTGGAGAGCGGTTGGTTGG 797
Query 1169 AGACATTTGCTATGAGGAGGCTTGCAAAGTTGCATCAGCCATCACGCCTGTTCCTGGTGG 1228
|||||||||||||| ||||||| ||||| |||||||||||||||| |||||||||||||
Sbjct 798 AGACATTTGCTATGTGGAGGCTAGCAAAATTGCATCAGCCATCACACCTGTTCCTGGTGA 857
Query 1229 TGTAGGACCAATGACCATAGCCATGCTCCTATCCAACACTTTAACATCAGCTAAGAGGAT 1288
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 858 TGTAGGACCAATGACCATAGCCATGCTTCTATCCAACACTTTAACATCAGCCAAGAGAAT 917
Query 1289 TCACAACTTCCAGTGA 1304
||||||||||||||||
Sbjct 918 TCACAACTTCCAGTGA 933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74296806600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5