BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490507
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00600.1 | Symbols: | Amino acid dehydrogenase family prote... 1297 0.0
AT4G00620.1 | Symbols: | Amino acid dehydrogenase family prote... 992 0.0
> AT4G00600.1 | Symbols: | Amino acid dehydrogenase family protein
| chr4:255320-256610 REVERSE LENGTH=933
Length=933
Score = 1297 bits (702), Expect = 0.0
Identities = 860/937 (92%), Gaps = 8/937 (1%)
Strand=Plus/Plus
Query 1 ATGTTTACCGATTGCTCCTCCTCCACGACGTCGCGTCTCATCCATTTGA-ACAGCCTCAA 59
|||||||| ||||||||||||||||| |||||||||||||||||||| | ||| || |||
Sbjct 1 ATGTTTACTGATTGCTCCTCCTCCACAACGTCGCGTCTCATCCATTT-ATACAACCGCAA 59
Query 60 TGGTGCTTTCCTTCCCCGCCCGTGCTTCGGCCAACTCAGCTTACGGACAACTGCGTCTAC 119
||||| |||||| ||||||||| || || ||||| |||||||||||||||||||||||||
Sbjct 60 TGGTGTTTTCCTCCCCCGCCCGAGCGTCAGCCAATTCAGCTTACGGACAACTGCGTCTAC 119
Query 120 CTGGCGCTGCACTCTCTCCATTCGCTCCTCTTCTTCTCCATCCGCGATTGTAATTAATGG 179
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 120 TTGGCGCTGCACTCTCTCCATTCGCTCCTCTTCTTCTCCATCTGCGATTGTAATTGATGG 179
Query 180 AAAGGCTGAGGCCAAAAATATTAGAGATGATATCAAAATCGAAGTTTCAAGAATGAAGGA 239
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAAGGCTGAGGCCAAAAAGATTAGAGATGATATCAAAATCGAAGTTTCAAGAATGAAGGA 239
Query 240 ATCAATCGGTGTGGTTCCTGCTGAAGATTCATCTGAAGAAGAGGTGTTGAAATCTGTATC 299
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 240 ATCAATCGGTGTGGTTCCTGCTGAAGATTCATCAGAAGAAGAGGTGTTGAAATATGTATC 299
Query 300 AGGCTTCAACGACGATCCTTCTGTCCATGGAATCCTTGTTCAGTTGCCTCTGCCATCGCA 359
||| ||||| || ||||||||||| || ||| ||||||||||||||||||| ||||||||
Sbjct 300 AGGATTCAATGATGATCCTTCTGTTCACGGAGTCCTTGTTCAGTTGCCTCTACCATCGCA 359
Query 360 TATGGATGAACAGAGCATATTGAATGCGGTTAGTATAGAGAAAGATGTTGACGGGTTTCA 419
|||||||||||||| ||||||||||||||||||||||||||| || ||||| || |||||
Sbjct 360 TATGGATGAACAGAACATATTGAATGCGGTTAGTATAGAGAAGGACGTTGATGGATTTCA 419
Query 420 CCCGCTAAATATTGGA-GGCCTTGCCATGCGTGGAAGAGAACCCTTATTCCTTCCGTGTA 478
|||||||||||||||| ||| ||||||||||||| |||||||| |||||| |||| ||||
Sbjct 420 CCCGCTAAATATTGGACGGC-TTGCCATGCGTGGTAGAGAACCTTTATTCGTTCCATGTA 478
Query 479 CTCCAAAAGGATGCATCGAGTTGTTGCATAGATACAAAATTGATAT-CATAGGAAAAAGA 537
|||||||||||||||||||||||||||| |||||||| ||||| || || ||| ||||||
Sbjct 479 CTCCAAAAGGATGCATCGAGTTGTTGCACAGATACAACATTGA-ATTCAAAGGCAAAAGA 537
Query 538 GCGGTTGTTCTCGGAAGGAGTAATATTGTTGGTATGCCAGCTGCTCTGTTACTGCAGAGG 597
|| |||||| | ||||||||||| |||||||||||||||||||||||||| ||||||| |
Sbjct 538 GCAGTTGTTATTGGAAGGAGTAACATTGTTGGTATGCCAGCTGCTCTGTTGCTGCAGAAG 597
Query 598 GAGGATGCGACTGTTACCATTATCCATTCAAGAACAATAAACCCTGAAGAAATCACAAGA 657
|||||||| || |||| |||||||||||||||||| || |||||||||||| ||||||||
Sbjct 598 GAGGATGCAACCGTTAGCATTATCCATTCAAGAACCATGAACCCTGAAGAACTCACAAGA 657
Query 658 CAAGCTGATATTATAATCGCAGCTGTTGG-ACAACCAAACATGGTCAGAGGAAGCTGGAT 716
||||||||||| ||||| |||||||||| | ||||||||||||||||||||||||||||
Sbjct 658 CAAGCTGATATCCTAATCTCAGCTGTTGGGA-AACCAAACATGGTCAGAGGAAGCTGGAT 716
Query 717 AAAACCTGGTGCAGTTGTCATCGATGTTGGGATTAAACGTGTTGAGGATCCAAGTGCTGC 776
|||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 717 AAAACCGGGTGCAGTCCTCATCGATGTTGGGATTAAACCTGTTGAGGATCCAAGTGCTGC 776
Query 777 CCATGGCTATCGATGGGTTGGAGACATTTGCTACGAGGAGGCTAGCAAAGTTGCATCAGC 836
| ||| | || | |||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct 777 CGGTGGAGAGCGGTTGGTTGGAGACATTTGCTATGTGGAGGCTAGCAAAATTGCATCAGC 836
Query 837 CATCACACCTGTTCCTGGTGGTGTTGGACCAATGACCATAGCCATGCTTCTATCCAACAC 896
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 837 CATCACACCTGTTCCTGGTGATGTAGGACCAATGACCATAGCCATGCTTCTATCCAACAC 896
Query 897 TTTTACATCAGCCAAGAGATTTCACAACTTCCAGTGA 933
||| ||||||||||||||| |||||||||||||||||
Sbjct 897 TTTAACATCAGCCAAGAGAATTCACAACTTCCAGTGA 933
> AT4G00620.1 | Symbols: | Amino acid dehydrogenase family protein
| chr4:259028-261019 REVERSE LENGTH=1551
Length=1551
Score = 992 bits (537), Expect = 0.0
Identities = 651/705 (92%), Gaps = 11/705 (2%)
Strand=Plus/Plus
Query 237 GGAATC-AATCGGT-GTGGTTC--CT-GCTGAAGATTCATCTGAAGAAGAGGTGTTGAAA 291
|||||| ||||| | | |||| || |||||||||||||| ||||||||||||||||||
Sbjct 613 GGAATCAAATCGTTCGAAGTTCGTCTAGCTGAAGATTCATCAGAAGAAGAGGTGTTGAAA 672
Query 292 TCTGTATCAGGCTTCAACGACGATCCTTCTGTCCATGGAATCCTTGTTCAGTTGCCTCTG 351
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 673 TCTGTATCAGGATTCAATGATGATCCTTCTGTCCATGGAATCCTTGTTCAGTTGCCTCTG 732
Query 352 CCATCGCATATGGATGAACAGAGCATATTGAATGCGGTTAGTATAGAGAAAGATGTTGAC 411
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 733 CCATCGCATATGGATGAACAGAACATACTGAATGCGGTTAGTATAGAGAAAGATGTTGAC 792
Query 412 GGGTTTCACCCGCTAAATATTGGA-GGCCTTGCCATGCGTGGAAGAGAACCCTTATTCCT 470
|| ||||| ||||||||||||||| || |||||||||||||||||||||||||||||| |
Sbjct 793 GGATTTCATCCGCTAAATATTGGACGG-CTTGCCATGCGTGGAAGAGAACCCTTATTCGT 851
Query 471 TCCGTGTACTCCAAAAGGATGCATCGAGTTGTTGCATAGATACAAAATTGATATCATAGG 530
||| |||||||||||||||||||| |||||||||||||||||||| ||||| |||| |||
Sbjct 852 TCCTTGTACTCCAAAAGGATGCATTGAGTTGTTGCATAGATACAACATTGAAATCAAAGG 911
Query 531 AAAAAGAGCGGTTGTTCTCGGAAGGAGTAATATTGTTGGTATGCCAGCTGCTCTGTTACT 590
||| |||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 912 AAAGAGAGCGGTTGTTATCGGAAGGAGTAACATTGTCGGTATGCCAGCTGCTCTTTTACT 971
Query 591 GCAGAGGGAGGATGCGACTGTTACCATTATCCATTCAAGAA-CAATAAACCCTGAAGAAA 649
||||||||||||||| || |||| ||||||||||||||||| ||| |||||||||||||
Sbjct 972 GCAGAGGGAGGATGCAACCGTTAGCATTATCCATTCAAGAACCAA-GAACCCTGAAGAAA 1030
Query 650 TCACAAGACAAGCTGATATTATAATCGCAGCTGTTGGACAACCAAACATGGTCAGAGGAA 709
|||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1031 TCACAAGAGAAGCTGATATTATAATCTCAGCTGTTGGACAGCCAAACATGGTCAGAGGAA 1090
Query 710 GCTGGATAAAACCTGGTGCAGTTGTCATCGATGTTGGGATTAAACGTGTTGAGGATCCAA 769
||||||||||||| || ||||| ||||||||||||||||||| | ||||||||||||||
Sbjct 1091 GCTGGATAAAACCGGGCGCAGTCCTCATCGATGTTGGGATTAATCCTGTTGAGGATCCAA 1150
Query 770 GTGCTGCCCATGGCTATCGATGGGTTGGAGACATTTGCTACGAGGAGGCTAGCAAAGTTG 829
||||||| | ||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1151 GTGCTGCGCGTGGATATCGATTGGTTGGAGACATTTGCTACGAGGAGGCTAGCAAAGTTG 1210
Query 830 CATCAGCCATCACACCTGTTCCTGGTGGTGTTGGACCAATGACCATAGCCATGCTTCTAT 889
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1211 CATCAGCCATCACACCTGTTCCTGGCGGTGTAGGACCAATGACCATAGCCATGCTTCTAT 1270
Query 890 CCAACACTTTTACATCAGCCAAGAG-ATTTCACAACTTCCAGTGA 933
|||||||||| |||||||| ||||| ||| |||||||||||||||
Sbjct 1271 CCAACACTTTAACATCAGCTAAGAGGATT-CACAACTTCCAGTGA 1314
Score = 135 bits (73), Expect = 6e-31
Identities = 225/292 (77%), Gaps = 36/292 (12%)
Strand=Plus/Plus
Query 1 ATGTTTACCGATTGCTCCTCCTCCACGACGTCGCGTCTCATCCATTTGAACAGCCTCAAT 60
||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||
Sbjct 244 ATGTTTACCGATTGCTCCTCCACCACGACGTCGCGTCTCATCCATTTGAACCGAAGCAGC 303
Query 61 GGTGCTTTCCTTCC-CCGCCCGTGCTTCGGCCAACTCAGCTTACGGACAACTGCGTCTA- 118
||| ||||||| || ||| | ||| ||||||||||| | |||| ||| ||||| |||
Sbjct 304 GGTACTTTCCT-CCTCCGTCAATGCGTCGGCCAACTCCGTTTACAGACCACTGCTTCTGG 362
Query 119 CC-TGGC-GCTGCACTCTCTCCA-TTCG-CTCCTCTTCTTCT-CCAT--CCGC-GAT--- 167
|| |||| |||||| || |||| ||| |||| | | |||| |||| |||| |||
Sbjct 363 CCGTGGCTGCTGCATTCGCTCCTCTTCTTCTCC-CAT-TTCTTCCATTTCCGCTGATACA 420
Query 168 ---T--G----T-----AATT--AAT-G--G-AAAGGCTGAGGCCAAAAATATTAGAGAT 207
| | | |||| ||| | | |||||||| ||| ||||| |||||||||
Sbjct 421 AAATCAGAGGGTGGCGCAATTGTAATAGATGGAAAGGCTGTGGCAAAAAAGATTAGAGAT 480
Query 208 GATATCAAAATCGAAGTTTCAAGAATGAAGGAATCAATCGGTGTGGTTCCTG 259
|| |||| ||| |||||||||||||||||||||||||| |||||| ||||||
Sbjct 481 GAAATCACAATTGAAGTTTCAAGAATGAAGGAATCAATTGGTGTGATTCCTG 532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45612605476
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5