BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490509

Length=569
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G00585.1 | Symbols:  | unknown protein; Has 47 Blast hits to...   876    0.0  


> AT4G00585.1 | Symbols:  | unknown protein; Has 47 Blast hits 
to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa 
- 3; Fungi - 7; Plants - 33; Viruses - 0; Other Eukaryotes 
- 4 (source: NCBI BLink). | chr4:250955-252598 REVERSE LENGTH=624
Length=624

 Score =  876 bits (474),  Expect = 0.0
 Identities = 542/574 (94%), Gaps = 8/574 (1%)
 Strand=Plus/Plus

Query  1    ACAAAGAAATGCCATAACTCGTTTCGCTCACCCTCTTAACTCTTAAGAACAAGTAGAAGA  60
            ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  1    ACAAACAAATGCCATAACTCGTTTCGCTCACCCTCTTAACTCTTTAGAACAAGTAGAAGA  60

Query  61   AGTCTCATCTTCTTC-T-TTCTCTGCGATCCTTCTGATTTCACTAAGGGAAAGGAATCAG  118
            ||||||||||||||| | |||| ||||||||||||||||||||||||| |||||||||||
Sbjct  61   AGTCTCATCTTCTTCGTCTTCTTTGCGATCCTTCTGATTTCACTAAGGAAAAGGAATCAG  120

Query  119  TGTTTGGTGGAACTAATCGATCCGATCTAGGAAAAATGGGAGGAGGTGAGCATGGACATG  178
            | |||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct  121  TTTTTGGTGGAAGTAATTGATCCGATCTAGGAAAAATGGGAGGAGGTGATCATGGACATG  180

Query  179  GAGGAGAAGGTGGCGATTTCAGAGCCAAAGTTTGGAGTATGTCTGGTGGGCCTTACTGTA  238
            ||| |||||| |||||||||||||||||||| ||||||||| ||||||||||| ||||||
Sbjct  181  GAGCAGAAGGAGGCGATTTCAGAGCCAAAGTCTGGAGTATGACTGGTGGGCCTAACTGTA  240

Query  239  GGCCCAAACATTGGCGTCGGAACACCGCCATTGCTATGTTCGGCGTTTTCCTTGTGTGTA  298
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  241  GGCCCAAACATTGGCGTCGGAACACCGCCATTGCTATGTTCGGCGTTTTCCTTGTGTGCA  300

Query  299  TCCCCATCGCCAAGCTATCTGCTAAGCTCGAGCAAAGGCCACACATGCCAGTACGCCCAA  358
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  301  TCCCCATCGCCAAGCTATCTGCTAAGCTTGAGCAAAGGCCACACATGCCAGTACGCCCAA  360

Query  359  TTCCTTCACAGATCTGGTGCAAGAACTTTGGAACCAAGGACGATTACGAAAAAGAGCATT  418
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  TTCCTTCACAGATCTGGTGCAAGAACTTTGGAACCAAGGACGATTACGAAAAAGAGCATT  420

Query  419  AAA-GTTTTTTGCTTGGTTTGGAGAGAACCCTTTAACTGGTCT-CTTATTTGCAGACAAT  476
            ||| ||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct  421  AAAAGTTTTTTTCTTGGTTTGGAGAGAACCCTTTAATTGGTCTTCTTATTTGCAGACAAT  480

Query  477  GTGAGCATaaaaaaaaaaaCCCTTCTAGCTCTGTCTTTGAATTTCATAGTACTGTGAACA  536
            |||||||||||||||    | ||||||||| ||||| || |||||| |||||||||||||
Sbjct  481  GTGAGCATAAAAAAAG---CGCTTCTAGCTTTGTCTATGGATTTCAGAGTACTGTGAACA  537

Query  537  TAATAATATGTCTTTG-CCTTGCCATGTAGAACA  569
            |||||||||||||||  |||||||||||||||||
Sbjct  538  TAATAATATGTCTTTTTCCTTGCCATGTAGAACA  571



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27327375968


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5