BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490510
Length=1668
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00550.1 | Symbols: DGD2 | digalactosyl diacylglycerol defic... 2340 0.0
> AT4G00550.1 | Symbols: DGD2 | digalactosyl diacylglycerol deficient
2 | chr4:237967-240500 REVERSE LENGTH=1891
Length=1891
Score = 2340 bits (1267), Expect = 0.0
Identities = 1444/1527 (95%), Gaps = 21/1527 (1%)
Strand=Plus/Plus
Query 42 TCAATTCAAAGATTGTTTCTGAATTGGAATCCTACAGAGGTTTAGCTTGAGATGATATGA 101
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 227 TCAACTCAAAGATTGTTTCTGAATTGGAATCTTACAGAGGTTTAGCTTGAGATGATATGA 286
Query 102 CGAAGCAGCAGCAGCAGCAACACATTGCCATATTTACCACAGCTAGTATTCCATGGCTTA 161
| || |||||| | ||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 287 CTAATCAGCAG--G-AGCAACACATTGCGATATTTACAACAGCTAGTATTCCATGGCTTA 343
Query 162 CGGGAACTGCTGTTAATCCTCTTTTCCGTGCTGCCTACCTTGCAAATGACGGGGAAAGAC 221
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 344 CGGGAACTGCTGTTAATCCTCTCTTCCGTGCTGCCTACCTTGCAAATGATGGGGAAAGAC 403
Query 222 GGGTCACTTTAGTGATTCCATGGCTGACAGTGAAGCACCAAAAGCTTGTCTACCCAAATA 281
||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 404 GGGTCACGTTGGTGATTCCATGGCTGACTTTGAAGCACCAAAAGCTTGTCTACCCAAATA 463
Query 282 GCATCACTTTTAGTTCCCCATCAGAGCATGAAGCTTATGTCCGCCACTGGCTTGAGGAGA 341
||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 464 GCATCACTTTTAGTTCCCCGTCAGAGCAAGAAGCTTATGTCCGCCAGTGGCTTGAGGAGA 523
Query 342 GAGTCTCATTTCCTTTAGGCTTTGAGATACGTTTCTATCCTGGAAAGTTTGCTACGGACA 401
||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 524 GAGTCTCTTTTCGTTTAGCCTTTGAGATACGTTTCTATCCTGGAAAGTTTGCTATTGACA 583
Query 402 AAAGAAGTATTCTTCCTGTTGGGGATATATCTGATGCCATTCCTGATGAAGAGGCAGACA 461
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 AAAGGAGTATTCTTCCTGTTGGGGATATATCTGATGCCATTCCTGATGAAGAGGCAGACA 643
Query 462 TTGCTGTCCTCGAGGAGCCTGAGCATCTCACATGGTTTCATCATGGCAAAAAATGGAAAA 521
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 644 TTGCTGTCCTCGAGGAGCCTGAGCATCTCACATGGTTTCATCATGGCCAAAAATGGAAAA 703
Query 522 CTAAGTTCAACTACGTCATAGGAATCGTACACACCAACTACTTGGAATACGTAAAAAGAG 581
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 704 CTAAGTTCAACTACGTCATAGGAATCGTACACACTAACTACTTGGAATACGTTAAAAGAG 763
Query 582 AGAAACAAGGCCGCGTCAAAGC-TTTTCTCCTCAAGTACTTAAACAGTTGGGTTGTTGGC 640
||||||||||||| |||||||| |||| ||||||| |||||||| |||||||||||||||
Sbjct 764 AGAAACAAGGCCGTGTCAAAGCATTTT-TCCTCAAATACTTAAATAGTTGGGTTGTTGGC 822
Query 641 ATTTACTGCCACAAGGTAATCAGGTTATCTGCTGCGACTCAAGAATACCCTAAATCTATA 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 ATTTACTGCCACAAGGTAATCAGGTTATCTGCTGCGACTCAAGAATACCCTAAATCTATA 882
Query 701 GTCTGCAACGTTCATGGTGTCAACCCTAAGTTTCTGGAGATTGGGTTGAGAAAACTAGAA 760
|||||||| |||||||| ||||||||||| ||||| || |||||||||||||||||||||
Sbjct 883 GTCTGCAATGTTCATGGCGTCAACCCTAAATTTCTCGAAATTGGGTTGAGAAAACTAGAA 942
Query 761 CAGCAGAAGCTCCAGGAGCAGCCCTTCACTAAAGGCGCATACTACATTGGTAAGATGGTC 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 CAGCAGAAGCTCCAGGAGCAGCCCTTCACTAAAGGCGCATACTACATTGGTAAGATGGTC 1002
Query 821 TGGAGCAAAGGGTACAAGGAGCTTCTTAAACTACTTGAGAAACACCAAAAGGAACT--CC 878
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1003 TGGAGCAAAGGGTACAAGGAGCTTCTTAAACTACTTGAGAAACACCAAAAGGAACTTGCC 1062
Query 879 TTGAGTTAGAGGTTGATTTATACGGTGATGGAGAGGACTCTGAAGAGATCAAAGAAGCAG 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 --GAGTTAGAGGTTGATTTATACGGTGATGGAGAGGACTCTGAAGAGATCAAAGAAGCAG 1120
Query 939 CCCGAAAACTCGAGTTGACGGTTAATATTTACCCAGGACGTGATCACGCTGACTCACTAT 998
||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1121 CCCGAAAACTCGACTTGACGGTTAATGTTTACCCAGGACGTGATCACGCTGACTCGCTAT 1180
Query 999 TTCACAACTATAAAGTGTTTCTCAACCCCAGCACGACCGACGTTGTCTGCACAACAACTG 1058
||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 1181 TTCACAACTATAAAGTGTTTCTCAACCCCAGCACGACAGACGTTGTGTGTACAACAACTG 1240
Query 1059 CAGAAGCCTTGGCGATGGGAAAAATCGTAGTGTGCGCGAATCACATATCGAACGAGTTCT 1118
||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||
Sbjct 1241 CAGAAGCCTTGGCGATGGGAAAAATAGTAGTATGCGCGAATCACATATCGAACAAGTTCT 1300
Query 1119 TCAAACAGTTTCCCAACTGCAGAACCTATGACGATGGAAAAGGTTTTGTTAGAGCCACAG 1178
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
Sbjct 1301 TCAAACAGTTTCCCAACTGCAGAACCTATGACGATGGACAAGGTTTTGTAAGAGCCAC-G 1359
Query 1179 -TCAAGGCTCTTGGGGAACAACCATCGCAACTAACAGAGCAACAGAGGCATGAACTATCA 1237
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1360 CTCAAGGCTCTTGGGGAACAACCATCGCAACTTACAGAGCAACAAAGGCATGAACTATCA 1419
Query 1238 TGGGAAGCTGCTACACAACGATTTATAAAAGCCTGTGATCTGAGCCGGTTATCAAGAGCA 1297
|||||||||||||||||||| |||||||||| || |||||||| |||||||||||||||
Sbjct 1420 TGGGAAGCTGCTACACAACGGTTTATAAAAGTCTCTGATCTGAACCGGTTATCAAGAGCT 1479
Query 1298 GAATCAAACTTATCAAAGAAAAGTGTGTTTGCGTCATCTTCGATTAGTGTGGGGAAAAAC 1357
|| || ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 GATTCGAACTTGTCAAAGAGAAGTGTGTTTGCGTCATCTTCGATTAGTGTGGGGAAAAAC 1539
Query 1358 TTGGAGGATATGTCTGCGTATATTCATTTCTTGGCGTCTGGATTTGAAGCTTCAAGAACA 1417
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1540 TTGGAGGATATGTCAGCGTATATTCATTTCTTGGCGTCTGGATTTGAAGCTTCCAGAACA 1599
Query 1418 GCTTTTGGTGCTATACCAGGAAGCTTGCAGCCTGATGAAGAGTTGTGCAGAGATCTTGGT 1477
||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||
Sbjct 1600 GCTTTTGGTGCTATACCTGGAAGCTTGCAGCCCGATGAAGAGTTATGTAGAGATCTTGGT 1659
Query 1478 TTGTCTCTCAACACTTCTTCCCCAAATACTCGCAAGCAAGATTGACCGTTTGACTGTTTC 1537
||||||||||||||| ||||||||||||||||||||||||||||||| | | | |||
Sbjct 1660 TTGTCTCTCAACACTCCTTCCCCAAATACTCGCAAGCAAGATTGACC-T--G--T-TTT- 1712
Query 1538 TTATTTTATCTTTGT-TG-A-ATCATT 1561
||| ||||||||||| || | ||||||
Sbjct 1713 TTAATTTATCTTTGTCTGCATATCATT 1739
Score = 126 bits (68), Expect = 6e-28
Identities = 103/119 (87%), Gaps = 5/119 (4%)
Strand=Plus/Plus
Query 1553 TGAATCATTCTATGGCATACTAT-ATAT-ATATGTTAACATGAAAGTTAGATTTTTCATC 1610
||||||||||||| ||| || | | | |||| | | |||||||||||||||||||||
Sbjct 1775 TGAATCATTCTATAGCA-GCTTTGGTGTAATAT-TGATGATGAAAGTTAGATTTTTCATC 1832
Query 1611 TTGTGGAACATGTATGATGACACAAGTCTGA-TCATAAAATTTAGTATTTGATTCCATT 1668
||||||||||||||||||||||| ||||||| | |||||||||||||| ||||||||||
Sbjct 1833 TTGTGGAACATGTATGATGACACGAGTCTGAATTATAAAATTTAGTATATGATTCCATT 1891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82429294890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5