BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490512
Length=1425
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00540.1 | Symbols: ATMYB3R2, PC-MYB2, MYB3R-2, MYB3R2 | myb... 1290 0.0
> AT4G00540.1 | Symbols: ATMYB3R2, PC-MYB2, MYB3R-2, MYB3R2 | myb
domain protein 3r2 | chr4:234597-237582 REVERSE LENGTH=1540
Length=1540
Score = 1290 bits (698), Expect = 0.0
Identities = 1112/1299 (86%), Gaps = 79/1299 (6%)
Strand=Plus/Plus
Query 99 TTTCTTCGATATATTCTCGTTAAGATGTGGCTGTTAATTAGGGTTTTA-------TCAAT 151
||||||| |||||||||||| || || |||||||| ||||||||||| |||||
Sbjct 157 TTTCTTC--TATATTCTCGTT-AGTTGAGGCTGTTATTTAGGGTTTTAGGTTTTGTCAAT 213
Query 152 TTCTTG-AGGAATTATGACAGAACCTTTTGATTTGAATCGATCCGAGTCCGAATCTGATA 210
||| || | || |||||||||| || ||||||| |||||||| |||||||| |||||||
Sbjct 214 TTC-TGAAAGACTTATGACAGAGTCTATTGATTTAAATCGATCAGAGTCCGAGTCTGATA 272
Query 211 ACAACA---ACAACGTTATTCCTACTTTTGCAATTGATAACTCTTCTCAAGGATACAGAA 267
|||||| || |||||| ||||| ||||||||||||| |||| | |||| | | |||
Sbjct 273 ACAACACCGACGACGTTACTCCTATTTTTGCAATTGATGACTC-T-TCAA--A-A-GGAA 326
Query 268 GAGTGAGTGGTCCGACCCGAAGATCAACTAAAGGAGGATGGACATCCGAAGAGGACAAAA 327
||||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 327 GAGTGAGTGGTCCTACTAGAAGATCAACTAAAGGAGGATGGACAGCCGAAGAGGACCAAA 386
Query 328 TTTTGACGAAAGCTGTGCAA-ATGTA-CGAGGAGAAGAACTGGaaaaaaaTTGCTGAATG 385
|||||||||| | |||| || | ||| | ||| || ||||||||||| |||||||||||
Sbjct 387 TTTTGACGAATGTTGTG-AAGAAGTACCAAGG-GAGGAACTGGAAAAGGATTGCTGAATG 444
Query 386 TCTTCCCAAG-CGGAAAGAGAAGAGGAGGAATGATGTTCAATGTCAGCACCGTTGGCTAA 444
||||| | ||| ||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 445 CCTTCCTGGGTCGG-AAGAGAATAGGAGGAATGATGTCCAATGTCAGCACCGTTGGCTTA 503
Query 445 AAGTTCTTCATCC-AGACCT-CAACAAAGGAGCTTGGAGAAAATATGAAGATGATCTCTT 502
| |||||| |||| || ||| ||| ||||||||||||| |||| | |||||||| |||||
Sbjct 504 AGGTTCTTGATCCAAG-CCTCCAA-AAAGGAGCTTGGAAAAAAGAGGAAGATGAACTCTT 561
Query 503 AAGTGAATTGGTTAAGGAATATATGGAGAAAGATAAGCCTCAATGGTCGAAAATTGCAAA 562
|||||| |||||||| || ||||||||||| |||| ||||| |||||| |||||| ||||
Sbjct 562 AAGTGAGTTGGTTAAAGATTATATGGAGAATGATAGGCCTCCATGGTCAAAAATTTCAAA 621
Query 563 ACAACTCCCTGGTCGCATCGGCAAGCAATGTCGTGAAAGGTGGCATAATCATTTAAATCC 622
|||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 622 GGAACTCCCTGGTCGCATCGGCAAGCAATGCCGCGAAAGGTGGCATAATCATTTGAATCC 681
Query 623 GACTATTAGAAAAACTCCATGGACTAGAGAAGAGGAATTAATTCTCGTTCAAGCGCAAAG 682
|||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 682 GACTATTATAAAATCTCCATGGACTAGAGAAGAGGAATTAATTCTCGTTCAAGCACAAAG 741
Query 683 AG-AACATGGCAATAAGTGGGCAGAGATTGCCAAGCTCTTGTCTGGAAGGACAGAGAATA 741
|| || | ||||| || |||||||||||||||||||| ||| |||||||||| |||||||
Sbjct 742 AGGAA-ACGGCAACAAATGGGCAGAGATTGCCAAGCTATTGCCTGGAAGGACGGAGAATA 800
Query 742 ATATTAAGAACCACTGGAACTGCTCAGTTAAGAAGAGATT-GAAGCAGTTTCCTAGTAAC 800
||||||||||||| ||||| || ||||||||||| || | || ||||||||||||||||
Sbjct 801 ATATTAAGAACCATTGGAATTGTTCAGTTAAGAAAAGGCTAGA-GCAGTTTCCTAGTAAC 859
Query 801 CTCTTCTCTGGTGT---C-AT----C-AA---TAGTTGTAGACATGAATACAACTTTTTC 848
|||||||||||||| | || | || ||||| | | ||||||||||||||||
Sbjct 860 CTCTTCTCTGGTGTGGTCTATGGTTCTAAACCTAGTTCTGGTTTTGAATACAACTTTTTC 919
Query 849 AATCAAAGCAACACGATGGCCGAGAGTTGCATAACATTTCAAATCAAGGAAGCTGAAAAG 908
|||||||| |||||||||| ||||||||||||||||| |||||||||||||||| ||||
Sbjct 920 AATCAAAGAAACACGATGGTCGAGAGTTGCATAACATCACAAATCAAGGAAGCTGCAAAG 979
Query 909 AGTCCTCAAAGAGATTCCTTGGAGTTAACTTTAGGACTTATGAATTGGAGGAACACGCCT 968
||||||||||| |||| |||||| |||||||||||||| ||||||||||| || ||
Sbjct 980 AGTCCTCAAAGGGATTTCTTGGATTTAACTTTAGGACT---GAATTGGAGGAGCATTTCT 1036
Query 969 TCATCCACAAGCTCTCTTAGAGGAGAAGAATCAGTCTCATCATCAGTAGAATCAGATTG- 1027
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1037 TCATCCACAAGCTCTCTTAGAGGAGAAGAATCAGTCTCATCATCAGTAGACTCAGTTTGT 1096
Query 1028 GTCAAGACTCAATGTATCAGAGAGTGTAGAAACTCCACAGAGCAGCAACAACGATAATGT 1087
| |||||||||||| | | | | ||||||||||||||| |||||||||||||| |||
Sbjct 1097 G-CAAGACTCAATG---C-GTGT-T-TAGAAACTCCACAGAACAGCAACAACGATACTGT 1149
Query 1088 GTGCGTAAAGGAAGTGAAGGAGATGCAAGAGAGACTGAGGATGGCTGCGAGTACTTTCAA 1147
||||||||||||||||| ||||||| |||||||||| || ||||||||||| |||||| |
Sbjct 1150 GTGCGTAAAGGAAGTGAGGGAGATGAAAGAGAGACTTAGAATGGCTGCGAGGACTTTCGA 1209
Query 1148 CACACCCTCCATTATCTCCAAAAGAAGCTCACCAGCTTCAGGTTTGAAACGGCTCAGACA 1207
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1210 CACACCCTCCATTATCTCCAAAACAAGCTCACCAGCTTCAGGTTTGAAACGGCTCAGACA 1269
Query 1208 AAAAGACGACACGCCGTTTCAAATAGATGCTCGAAGTCACATGTCAAGCGAGGAA-A--A 1264
|||| |||| || ||||||| || |||||||||||||||||||||||| |||||| | |
Sbjct 1270 AAAATACGATACACCGTTTCCAACAGATGCTCGAAGTCACATGTCAAGTGAGGAAGATCA 1329
Query 1265 G-CAGT--CAA-TT-TC----ATCCAAATACAGA---------CGCAACACTTGCTCTGG 1306
|||| || || || ||||||||||||| |||||||| ||||||||
Sbjct 1330 CTCAGTTTCAGCTTCTCCTTCATCCAAATACAGATTTGTGAAACGCAACACCTGCTCTGG 1389
Query 1307 CTCAAAACCCTTGGAGAGGCGTTTAGATTTTGACTTTCT 1345
|||||||||||||||||||||||||||||||||||||||
Sbjct 1390 CTCAAAACCCTTGGAGAGGCGTTTAGATTTTGACTTTCT 1428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70230562455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5